BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46290.3 Length=1936 Score E Sequences producing significant alignments: (Bits) Value Ahg494344 jgi|Araly1|494344|fgenesh2_kg.8__160__AT5G46290.1 2287 0.0 Ahg934005 jgi|Araly1|934005|scaffold_401993.1 158 2e-37 > Ahg494344 jgi|Araly1|494344|fgenesh2_kg.8__160__AT5G46290.1 Length=1817 Score = 2287 bits (1238), Expect = 0.0 Identities = 1338/1385 (97%), Gaps = 12/1385 (1%) Strand=Plus/Plus Query 21 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTTCctctct 80 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1 TTTCGCAAAACACACATCACACACCATTTTCACAACATCGTACTTATCGCCTT-C-CTCT 58 Query 81 ctctcaatacctc--tctcAATTTCTGGATCCACCATGCAAGCTCTTCAATCTTCATCTC 138 |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 59 CTCTCAAT--CTCAATCTCAATTTCTGGATCCACCATGCAAGCTCTTCAGTCTTCATCTC 116 Query 139 TCCGTGCTTCTCCTCCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGCTAA 198 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 117 TCCGTGCTTCTCCACCAAACCCACTTCGCTTACCATCAAATCGTCAATCACATCAGATAA 176 Query 199 T---TACCAATGCGAGACCTTTGCGAAGACAACAACGTTCCTTCATCTCCGCATCAGCAT 255 | |||||||||||||||||| |||||| || || |||||||||||||||||||||| Sbjct 177 TCACCACCAATGCGAGACCTTTGAGAAGAC-AC--CGCTCCTTCATCTCCGCATCAGCAT 233 Query 256 CCACTGTCTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 315 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 CCACTGTTTCCGCTCCTAAACGCGAAACAGATCCGAAGAAACGAGTTGTCATTACTGGTA 293 Query 316 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGAGAAATTGTTGTCTG 375 |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 294 TGGGTCTCGTCTCTGTGTTTGGTAACGATGTTGATGCTTACTACGACAAACTCTTGTCTG 353 Query 376 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GTGAGAGTGGAATCAGTTTGATTGATCGTTTCGATGCTTCCAAGTTCCCTACTCGATTCG 413 Query 436 GTGGTCAGATCCGTGGGTTTAGCTCTGAAGGTTATATTGATGGCAAGAATGAGCGTAGGC 495 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 414 GTGGTCAGATCCGTGGCTTTAGCTCTGAAGGTTATATTGATGGCAAAAATGAGCGTAGGC 473 Query 496 TTGATGATTGTTTGAAATATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 555 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 TTGATGATTGTTTGAAGTATTGCATTGTTGCTGGTAAAAAAGCTCTTGAAAGTGCCAATC 533 Query 556 TTGGTGGTGATAAGCTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 615 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TTGGTGGTGATAAACTTAACACGATTGATAAGAGGAAAGCTGGAGTACTAGTTGGGACTG 593 Query 616 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGTGTTCAGAATTTGATTGAGAAGGGTCATA 675 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 594 GAATGGGAGGTTTAACTGTGTTTTCAGAAGGAGTTCAGAATTTGATTGAGAAGGGTCATA 653 Query 676 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAATATGGGTTCTGCTTTGTTGG 735 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 654 GGAGGATTAGTCCATTTTTTATACCTTATGCTATAACAAACATGGGTTCTGCTTTGTTGG 713 Query 736 CGATTGATCTTGGTCTTATGGGTCCTAACTATTCGATTTCAACTGCTTGTGCTACTTCGA 795 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 714 CGATTGATCTTGGTCTTATGGGTCCTAACTACTCGATTTCTACTGCTTGTGCTACTTCGA 773 Query 796 ATTACTGCTTTTACGCTGCTGCGAATCACATTCGTCGTGGTGAAGCTGATATGATGATTG 855 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 774 ATTACTGTTTTTACGCTGCTGCGAACCACATTCGTCGTGGTGAAGCTGATATGATGATTG 833 Query 856 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 CTGGTGGGACTGAGGCTGCTATTATTCCTATTGGGTTGGGAGGTTTTGTTGCTTGTAGGG 893 Query 916 CATTGTCCCAGAGAAATGATGACCCTCAAACTGCTTCCAGGCCGTGGGATAAAGCAAGAG 975 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 894 CATTGTCTCAGAGGAATGATGACCCTCAAACTGCTTCGAGGCCGTGGGATAAAGCAAGAG 953 Query 976 ATGGGTTTGTTATGGGTGAAGGAGCTGGTGTTCTGGTGATGGAAAGCTTGGAACATGCAA 1035 |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 954 ATGGCTTTGTTATGGGCGAAGGAGCTGGTGTTCTGGTGATGGAAAGTTTGGAACATGCGA 1013 Query 1036 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1095 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 TGAAACGTGGTGCTCCAATTGTAGCAGAATATCTTGGAGGTGCTGTTAATTGTGATGCTC 1073 Query 1096 ACCATATGACTGATCCAAGAGCTGATGGTCTTGGGGTTTCTTCATGCATTGAAAGATGCC 1155 |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||| Sbjct 1074 ACCATATGACTGATCCAAGAGCTGATGGGCTTGGTGTCTCTTCATGCATTGAGAGATGCC 1133 Query 1156 TGGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACTTCCA 1215 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1134 TTGAAGATGCTGGTGTATCACCTGAGGAGGTAAATTACATCAATGCACATGCAACATCCA 1193 Query 1216 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1194 CTCTTGCTGGTGATCTTGCTGAGATTAATGCCATTAAAAAGGTATTCAAGAGCACTTCAG 1253 Query 1276 GGATCAAAATCAACGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1335 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 GGATCAAAATCAATGCCACCAAGTCTATGATAGGTCACTGCCTCGGTGCAGCTGGAGGTC 1313 Query 1336 TAGAAGCCATCGCCACCGTGAAGGCTATCAACACTGGATGGCTGCATCCTTCCATCAACC 1395 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1314 TAGAAGCCATCGCCACCGTGAAGGCTATTAACACTGGATGGCTGCATCCTTCCATCAACC 1373 Query 1396 AATTT 1400 ||||| Sbjct 1374 AATTT 1378 Score = 645 bits (349), Expect = 0.0 Identities = 414/442 (94%), Gaps = 18/442 (4%) Strand=Plus/Plus Query 1449 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAACACGAGGTT 1508 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1379 AACCCAGAACAAGCTGTGGACTTTGACACGGTCCCAAACGAGAAGAAGCAGCACGAAGTT 1438 Query 1509 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCGGTAGTCGCCTTCTCT 1568 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 1439 GATGTTGCCATATCAAACTCGTTCGGGTTCGGTGGACACAACTCAGTCGTCGCCTTCTCT 1498 Query 1569 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGC-CCTATCGGTTACTATCA 1627 |||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||| Sbjct 1499 GCCTTCAAACCCTGATTTCTTCATACCTTTTAGATTCTCTGCTCC-ATCCGTTAC-ATCA 1556 Query 1628 TCATCCATCACCACCACTTGCAGCTTCTTGGTT-CACAAGTTGGAGCTCTTCCTCTGGCC 1686 || | ||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1557 TC--C-ATCACCACCACTTGCAGCTTCTTGGTTTCACAAGTTTAAGCTCTTCCTCTGGCC 1613 Query 1687 TTTTGCGGTTCTT-T----C-ATTCCCCGTTTC-TTACGGTTGCTGAGATTTCAGATTTT 1739 ||||||||||||| | | ||||||||||| |||| ||||||||||||||||||||| Sbjct 1614 TTTTGCGGTTCTTATTTTTCCATTCCCCGTTTTGTTACTGTTGCTGAGATTTCAGATTTT 1673 Query 1740 GTTTGTTCTCTCTCTTGTCTGCGGAATGTTGTGTATCTTAGTTCGTTCCATATTTGCGTA 1799 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1674 GTTTGTTCTCTCTCTTGTCTGCGGAATGTT-TGTATCTTAGTTCGTTCCATATTTGCGTA 1732 Query 1800 ATTTATAAAAACAGAAA-CTGAGAGAATCTTGTAGTAACGGTGTTATTGTCAGAATAATC 1858 |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1733 ATTTATAAAA-CAGAAAACTGAGAGAATCTTGTAGTAACGGTGTTAGTGTCAGAATAATC 1791 Query 1859 CAA-TTAGGGGATTCTCATCTT 1879 ||| |||||||||||||||||| Sbjct 1792 CAAATTAGGGGATTCTCATCTT 1813 > Ahg934005 jgi|Araly1|934005|scaffold_401993.1 Length=208 Score = 158 bits (85), Expect = 2e-37 Identities = 93/97 (96%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1010 GGTGATGGAAAGCTTGGAACATGCAATGAAACGTGGTGCTCCAATTGTAGCAGAATATCT 1069 |||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||| Sbjct 73 GGTGATGGAAAGCTTGGAACATGCGATGAGACGTGGTACTCTAATTGTAGCAGAATATCT 132 Query 1070 TGGAGGTGCTGTTAATTGTGATGCTCACCATATGACT 1106 ||||||||||||||||||||||||||||||||||||| Sbjct 133 TGGAGGTGCTGTTAATTGTGATGCTCACCATATGACT 169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72752367950 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5