BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46330.1 Length=3727 Score E Sequences producing significant alignments: (Bits) Value Ahg356368 jgi|Araly1|356368|fgenesh1_pg.C_scaffold_8000155 4566 0.0 > Ahg356368 jgi|Araly1|356368|fgenesh1_pg.C_scaffold_8000155 Length=3528 Score = 4566 bits (2472), Expect = 0.0 Identities = 3201/3552 (90%), Gaps = 54/3552 (2%) Strand=Plus/Plus Query 67 ATGAAGTTACTCTCAAAGACCTTTTTGATATTAACTCTCACCTTCTTCTTCTTTGGCATT 126 ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| || Sbjct 1 ATGAAGTTACTCTCAGAGACCTTTCTGATATTAACTCTCACTTTCTTCTTCTTTGGCTTT 60 Query 127 GCACTAGCGAAACAGAGCTTTGAACCAGAGATCGAAGCTTTGAA-ATCCTTCAAGAATGG 185 |||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct 61 GCACTAGCGAAACAGAGCTTTGAACCAGAGATTGAAGCTTT-AAGATCCTTCAAGAGTGG 119 Query 186 TATTTCCAACGACCCTTTAGGAGTATTATCAGATTGGACCATCATCGGTTCGTTACGACA 245 ||||||| |||||||||||||||||| || ||||||||||||| ||||||| ||||||| Sbjct 120 CATTTCCATCGACCCTTTAGGAGTATTGTCGGATTGGACCATCACCGGTTCGGTACGACA 179 Query 246 CTGTAATTGGACCGGAATCACCTGCGATAGTACCGGACATGTAGTCTCGGTTTCCTTGCT 305 ||| |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct 180 CTGCAATTGGACCGGAATCACCTGCGATAGTACCGGCCACGTTGTCTCTGTTTCCTTGCT 239 Query 306 GGAGAAGCAACTTGAAGGTGTTCTGTCTCCAGCCATAGCGAATCTCACCTATCTCCAGGT 365 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 240 GGAGAAGCAACTTGAAGGTGTTCTGTCCCCAGCCATAGCAAATCTCACCTATCTCCAGGT 299 Query 366 TCTTGATCTCACTTCAAATAGTTTTACCGGCA-AAATACCGGCTGAAATAGGAAAGTTAA 424 |||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||| Sbjct 300 TCTTGATCTCACTTCAAATAATTTTACCGG-AGAAATACCGGCTGAAATCGGAAAGTTAA 358 Query 425 CCGAGCTTAACCAGCTTATTCTGTACCT-AAACTATTTCTCTGGTTCGATTCCTTCTGGA 483 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||| | Sbjct 359 CCGAGCTTAACCAGCTTATTCTTTA-CTCAAACTATTTCTCTGGTTCGATTCCTTCTGAA 417 Query 484 ATCTGGGAGCTTAAGAATATTTTCTATCTTGATCTTAGAAATAATTTGTTGTCCGGTGAT 543 || ||||| ||||||||| || | | ||||||||| |||||||||||||| |||||||| Sbjct 418 ATTTGGGAACTTAAGAATCTTATGTCTCTTGATCTGAGAAATAATTTGTTAACCGGTGAT 477 Query 544 GTTCCTGAGGAAATCTGCAAAACCAGTTCTTTGGTA-TTGATTGG-GTTTGATTACAACA 601 |||||| | | ||| |||||||| || |||||||| | | | || ||| || |||||| Sbjct 478 GTTCCTAAAGCAATTTGCAAAACTAGAACTTTGGTAGTAG-TAGGAGTTGGA-AACAACA 535 Query 602 ACTTAACCGGGAAAATACCAGAATGCTTAGGAGATTTGGTTCATCTCCAAATGTTTGTAG 661 |||||||||| || |||||||| ||||||||||||||||||||||| | ||||||||| Sbjct 536 ACTTAACCGGTAATATACCAGATTGCTTAGGAGATTTGGTTCATCTAGAGGTGTTTGTAG 595 Query 662 CAGCTGGTAACC-ATTTAACTGGTTCGATTCCGGTATCAATTGGTACTCTGGCTAATTTA 720 ||| | ||||| || | |||||||||||||||| || |||||||| ||| |||| | Sbjct 596 CAGATATTAACCGGCTT-AGTGGTTCGATTCCGGTAACAGTTGGTACTTTGGTTAATCTG 654 Query 721 ACGGATTTAGACCTGAGTGGTAACCAGTTAACCGGAAAAATACCGAGAGATTTTGGAAAT 780 ||| ||||||||||||||||||||||||||||||| | |||||| ||||| | |||||| Sbjct 655 ACGAATTTAGACCTGAGTGGTAACCAGTTAACCGGTAGAATACCAAGAGAGATAGGAAAT 714 Query 781 CTCTTGAACTTACAGTCTCTCGTTTTAACTGAAAACTTGTTGGAAGGAGATATACCAGCT 840 ||||||||| ||||| |||||||| || ||| ||||||||||||||||| ||||| ||| Sbjct 715 CTCTTGAACATACAGGCTCTCGTTCTATTTGATAACTTGTTGGAAGGAGAAATACCGGCT 774 Query 841 GAGATCGGAAACTGCTCGAGCTTGGTCCAACTTGAGCTTTACGATAACCAGTTAACCGGG 900 ||||||||||||||| |||||||| || | |||||||| |||| |||||||||||||||| Sbjct 775 GAGATCGGAAACTGCACGAGCTTGATCGACCTTGAGCTGTACGGTAACCAGTTAACCGGG 834 Query 901 AAAATACCAGCTGAATTAGGGAATTTGGTTCAGCTGCAAGCACTCCGGATATACAAGAAC 960 ||||||||||||| |||||||||||||||||||| |||| |||||| ||||| |||| Sbjct 835 CGAATACCAGCTGAACTAGGGAATTTGGTTCAGCTGGAAGCCCTCCGGTTATACGGGAAC 894 Query 961 AAACTTACTTCTTCAATTCCATCTTCATTGTTCCGGTTAACTCAG-TTAACCCATTTGGG 1019 || || | ||| ||| ||||||| |||||||| |||||||| | | |||| || |||| Sbjct 895 AACCTCAATTCCTCACTTCCATCCTCATTGTTTCGGTTAACGC-GTTTAAGATATCTGGG 953 Query 1020 GTTATCAGAAAACCATTTGGTTGGACCGATAT-CAGAAGAAATCGGTTTTCTTGAGTCAC 1078 |||||||||||||| ||||||||||| || | | ||||||||||||| ||| |||||| Sbjct 954 ATTATCAGAAAACCAGTTGGTTGGACCAAT-TCCCGAAGAAATCGGTTCTCTCAAGTCAC 1012 Query 1079 TTGAAGTCCTCACACTTCATTCCAACAACTTCACAGGAGAGTTTCCACAGTCCATCACAA 1138 || ||||||| || || |||||||||||||| || ||||||||||||||||||||||||| Sbjct 1013 TTCAAGTCCTAACGCTCCATTCCAACAACTTAACTGGAGAGTTTCCACAGTCCATCACAA 1072 Query 1139 ACTTGAGGAACTTGACAGTCCTAACGGTGGGGTTCAATAATATTTCCGGTGAGCTCCCGG 1198 ||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||| | Sbjct 1073 ACTTGAGGAACTTGACAGTGATGACGATGGGGTTCAATTATATTTCCGGTGAGCTCCCAG 1132 Query 1199 CGGATCTAGGGCTTCTTACAAACCTTCGGAACCTTTCAGCGCACGACAATCTTCTTACCG 1258 |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| Sbjct 1133 CGGATCTAGGGCTTCTTACAAACCTTAGAAACCTTTCAGCGCACGACAATCATCTTACCG 1192 Query 1259 GACCAATACCTTCCAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTCACA 1318 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1193 GACCAATACCTTCTAGCATAAGTAACTGCACCGGTCTTAAACTCCTGGACCTGTCTTTTA 1252 Query 1319 ACCAA-ATGACTGGCGAGATCCCGCGGGGTTTCGGAAGGATGAATCTTAC-GTTCATTTC 1376 | ||| ||||||||| |||| ||| ||||||| |||||| |||||||||| | || |||| Sbjct 1253 A-CAAGATGACTGGCAAGATTCCGTGGGGTTTAGGAAGGCTGAATCTTACGGCTC-TTTC 1310 Query 1377 TATTGGGAGGAATC-ATTTCACCGGTGAAATTCCAGATGATATCTTCAACTGTTCAAACT 1435 | ||||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1311 TCTTGGGCCGAATCGGTTT-ACCGGCGAAATTCCAGATGATATCTTCAACTGTTCAAACA 1369 Query 1436 TGGAAACTCTTAGTGTGGCAGATAACAACTTAACAGGAACTCTCAAGCCATTAATTGGGA 1495 ||||||| |||| | |||| | ||||||||||||||||| ||||||||||| ||||| | Sbjct 1370 TGGAAACCCTTAATCTGGCCGGGAACAACTTAACAGGAACGCTCAAGCCATTCATTGGAA 1429 Query 1496 AGCTTCAA-AAACTCAGGATTTTGCAAGTTTCATATAACTCTCTCACTGGACCGATTCCT 1554 ||||| || |||||||||||||| ||||| || | |||||||||||| ||| |||||| Sbjct 1430 AGCTT-AAGAAACTCAGGATTTTTCAAGTGTCGTCTAACTCTCTCACAGGAAAGATTCCG 1488 Query 1555 CGAGAAATCGGGAATCTGAAAGATTTGAATA-TCTTGTACCTTCACTCTAATGGTTTCAC 1613 |||| ||||||||||||| ||| ||| ||| ||||||| ||||| |||||| ||||||| Sbjct 1489 GGAGAGATCGGGAATCTGAGAGAGTTG-ATACTCTTGTATCTTCATTCTAATCGTTTCAC 1547 Query 1614 AGGGAGAATCCCGAGAGAGATGTCGAATCTCACTCTCCTCCAGGGGCTAAGGATGTATTC 1673 ||||| ||||||||| ||||| || ||||||||||||||||||||||| || || || Sbjct 1548 AGGGATAATCCCGAGGGAGATATCAAATCTCACTCTCCTCCAGGGGCTTGGGCTGCATAG 1607 Query 1674 AAATGATCTTGAAGGTCCAATTCCTGAAGAAATGTTTGATATGAAGCTACTCTCAGTTCT 1733 ||||| ||||||||||||||||||||||||||||||||| |||| || ||| |||| || Sbjct 1608 AAATGGTCTTGAAGGTCCAATTCCTGAAGAAATGTTTGACATGATGCAACTTTCAGAGCT 1667 Query 1734 TGATCTTTCCAACAACAAATTCTCAGGTCAAATTCCTGCCTTGTTCTCCAAGCTTGAATC 1793 ||| || |||| ||||||||||||||||| ||| |||||||||||||| ||||| |||| Sbjct 1668 TGAGCTATCCAGCAACAAATTCTCAGGTCCAATACCTGCCTTGTTCTCGAAGCTACAATC 1727 Query 1794 GCTTACCTACTTGA-GTCTTCAAGGAAACAAATTCAACGGGTCTATCCCTGCAAGCCTTA 1852 |||||||||||| | |||| || |||||||| |||||||||||||||||||||||||||| Sbjct 1728 GCTTACCTACTT-AGGTCTACACGGAAACAAGTTCAACGGGTCTATCCCTGCAAGCCTTA 1786 Query 1853 AGTCGCTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACTGGAACCATCC 1912 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1787 AGTCACTTTCGCTTCTCAACACATTCGATATCTCCGACAATCTTCTCACCGGAACCATCC 1846 Query 1913 CTGGA-GAGCTGTTAGCTTCTTTGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1971 || || ||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1847 CT-GAGGAGCTGTTATCTTCGATGAAAAACATGCAGCTTTACCTCAACTTCTCAAACAAC 1905 Query 1972 TTGTTGACTGGAACCATC-CCAAAGGAGCTTGG-AAAGCTTGAAATGGTTCAAGAAATCG 2029 || ||||||||||||||| || || |||||||| ||| |||||||||||||||||||||| Sbjct 1906 TTCTTGACTGGAACCATCTCC-AACGAGCTTGGCAAA-CTTGAAATGGTTCAAGAAATCG 1963 Query 2030 ACCTTTCAAACAATCTCTTTTCTGGGTCTATTCCAAGATCTTTACAGGCCTGCAAAAATG 2089 || |||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||||||| Sbjct 1964 ACTTTTCGAACAATCTCTTTTCCGGGTCTATTCCAATATCGTTAAAGGCCTGCAAAAATG 2023 Query 2090 TGTTCACACTGGATTTTTCGCAGAACAATCTCTCGGGTCATATACCAGATGAAGTCTT-- 2147 ||||||||||||||||||||| ||||||| |||||||||| || |||| ||||||||| Sbjct 2024 TGTTCACACTGGATTTTTCGCGGAACAATATCTCGGGTCAGATCCCAGGTGAAGTCTTCC 2083 Query 2148 -CC-A--AGGCATGGATATGATCATAAGCTTGAACCTTTCAAGGAACAGTTTCTCTGGAG 2203 || | |||||||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 2084 ACCAAGGAGGCATGGATATGATCATAAGCTTGAACCTTTCAAGAAACAGTCTCTCTGGTG 2143 Query 2204 AAATCCCTCAGAGCTTCGGGAACATGACGCATTTGGTCTCCTTGGATCTCTCTAGTAACA 2263 ||||||| || ||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 2144 GAATCCCTGAGGGCTTCGGGAACTTGACGCATTTGGTCTCCTTGGATCTTTCTAGTAACA 2203 Query 2264 ATCTCACTGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAAAC 2323 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2204 ATCTCACAGGTGAAATTCCAGAGAGTCTCGCCAATCTTTCGACTCTGAAACATCTCAGAC 2263 Query 2324 TAGCTTCAAACAACCTCAAAGGCCATGTTCCTGAATCCGGGGTGTTCAAAAACATCAACG 2383 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2264 TAGCTTCAAACCACCTCAAAGGCCATGTTCCTGAATCCGGTGTGTTCAAAAACATCAACG 2323 Query 2384 CCTCTGATCTAATGGGAAACACAGATCTCTGTGGTAGCAAGAAGCCTCTCAAGCCATGTA 2443 | |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 2324 CGTCTGATCTGATGGGAAACACAGATCTCTGTGGCAGAAAGAAGCCTCTCAAGCCATGTA 2383 Query 2444 CGATCAAGCAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAGTCATCCTGATTATTCTTG 2503 ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 2384 TGATCAAGAAGAAGTCGAGCCACTTCTCGAAGAGAACCAGAATCATCGTGATTGTTCTTG 2443 Query 2504 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGATTCTAACCTGTTGCAAGa 2563 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| Sbjct 2444 GATCAGCCGCGGCTCTTCTTCTTGTCCTGCTTCTTGTTCTGTTTCTCACCTGTTACAAGA 2503 Query 2564 aaaaagaaaaaaaGATTGAAAATTCATCAGAGTCCTCATTACCGGATTTGGATTCAGCTC 2623 |||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 2504 AAAAGGAAAAAAAGATAGAAAACTCATCAGAGTCTTCATTACCAAATTTGGATTCAGCTC 2563 Query 2624 TGAAACTGAAGAGATTTGAACCAAAAGAGTTGGAGCAAGCAACAGATTCATTCAACAGTG 2683 |||| ||||||||||| || |||||||||||||| |||||||||||||| |||||||||| Sbjct 2564 TGAAGCTGAAGAGATTCGATCCAAAAGAGTTGGAACAAGCAACAGATTCTTTCAACAGTG 2623 Query 2684 CCAACATCATTGGCTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGAAGATGGGA 2743 | ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2624 CTAACATCATTGGTTCAAGCAGCTTAAGCACAGTGTACAAAGGTCAGCTAGTAGATGGGA 2683 Query 2744 CAGTGATTGCAGTAAAAGTATTGAATCTAAAGGAATTCTCTGCAGAATCAGACAAGTGGT 2803 ||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || |||| Sbjct 2684 CAGTGATCGCAGTAAAAGTATTGAATCTGAAGCAATTCTCTGCAGAATCAGATAAATGGT 2743 Query 2804 TCTACACAGAAGCTAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2863 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2744 TCTACACAGAAGCCAAAACATTGAGCCAACTAAAACATCGAAACCTGGTGAAGATCTTAG 2803 Query 2864 GGTTTGCGTGGGAAAGCGGCAAAACGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2923 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2804 GGTTTGCTTGGGAAAGCGGCAAAATGAAAGCTTTAGTGCTTCCATTTATGGAGAATGGAA 2863 Query 2924 ACTTGGAGGACACCATTCACGGCTCTGC-AGCACCGATTGGGTCGCTT-TTAGAAAAAAT 2981 |||||||||||| |||||||||||||| | ||||||| |||||| || | ||| | ||| Sbjct 2864 GCTTGGAGGACACGATTCACGGCTCTGCTA-CACCGATCGGGTCG-TTATCAGAGAGAAT 2921 Query 2982 CGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATATGGTTTTCC 3041 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 2922 AGATCTTTGTGTTCATATCGCAAGCGGAATCGATTATCTTCATTCTGGATTTGG-TTTCC 2980 Query 3042 C-ATCGTTCATTGTGATCTGAAGCCAGCTAATATACTCCTTGACAGTGACCGCGTTGCTC 3100 | || ||||||||||||||||||||||| ||||||||||| |||||||| || ||||||| Sbjct 2981 CAATTGTTCATTGTGATCTGAAGCCAGCAAATATACTCCTCGACAGTGATCGTGTTGCTC 3040 Query 3101 ACGTAAGCGATTTTGGAACTGCTCGGATTCTAGGTTTCCGCGAAGATGGAAGCACCACAG 3160 ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 3041 ACGTAAGCGATTTCGGAACTGCTCGAATTCTAGGTTTCCGTGAAGATGGAAGCACCACAG 3100 Query 3161 CTTCAACAT-CAGCCTTCGAGGGTACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3219 |||| || | |||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3101 CTTCTAC-TGCAGCTTTCGAGGGCACAATTGGATACTTAGCTCCAGAGTTTGCTTATATG 3159 Query 3220 AGGAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTGATG 3279 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3160 AGCAAAGTGACAACAAAAGCCGATGTATTCAGCTTCGGGATCATAATGATGGAGCTAATG 3219 Query 3280 ACGAAACAGAGACCAACTTCGTTGAATGATGAAGATTCACAAGACATGACTTTGCGCCAA 3339 |||| |||||||||||||||||||||||||||| | ||||||| |||||||||||| ||| Sbjct 3220 ACGAGACAGAGACCAACTTCGTTGAATGATGAAAAGTCACAAGGCATGACTTTGCGTCAA 3279 Query 3340 TTGGTGGAGAAATCGATTGGAAATGGAAGAAAAGGGATGGTTAGGGTTCTTGATAT-GGA 3398 |||||||||||||| |||||| |||||| | |||||||| |||||||||||||| | ||| Sbjct 3280 TTGGTGGAGAAATCAATTGGAGATGGAACAGAAGGGATGATTAGGGTTCTTGAT-TCGGA 3338 Query 3399 ACTCGGGGACTCTATTGTTTCTCTG-AAACAGGAAGAGGCTATTGAAGACTTT-CTGAAG 3456 |||||||||| |||||||| ||| | |||||||||||||| |||||||| ||| ||||| Sbjct 3339 ACTCGGGGACGCTATTGTTACTC-GCAAACAGGAAGAGGCCATTGAAGA-TTTGTTGAAG 3396 Query 3457 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3397 CTTTGTTTGTTCTGTACAAGCTCTAGACCTGAAGATCGACCTGATATGAACGAGATTCTT 3456 Query 3517 ACACATCTGATGAAACTTAGAGGCAAAGCGAATTCATTTCGAGAAGATCGTAACGAGGAT 3576 | ||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 3457 ATACAGCTGATGAAAGTTAGAGGCAAAGCGAACTCATTTCAAGAAGATCGTAACGAGGAT 3516 Query 3577 CGAGAAGTTTAG 3588 |||||||||||| Sbjct 3517 CGAGAAGTTTAG 3528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 140813020100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5