BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46420.1
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494329 jgi|Araly1|494329|fgenesh2_kg.8__145__AT5G46420.1 3116 0.0
> Ahg494329 jgi|Araly1|494329|fgenesh2_kg.8__145__AT5G46420.1
Length=2022
Score = 3116 bits (1687), Expect = 0.0
Identities = 1919/2030 (95%), Gaps = 19/2030 (1%)
Strand=Plus/Plus
Query 37 AAGAGATAATGCTGAGAGCTTCGCTGCTCTGTTCTTCGACCTCAATCACTTTCACACCAA 96
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1 AAGAGATAATGCTGAGAGCTTCGCTTCTCTGTTCTTCGGCCTCAATCACTTTCACACCAA 60
Query 97 TTCAACTATTCAATCCCAATAGT-TCCCATCGTTTCCCAAGATTCGAACTATCTCGTCCT 155
||||||||||||||||||||| | |||| || ||||| ||| |||||| ||||||||||
Sbjct 61 TTCAACTATTCAATCCCAATA-TCTCCCCTCATTTCCAAAGCTTCGAAGTATCTCGTCCC 119
Query 156 GTCTCGGCTTTGTCTCGTACC--AAA-TGTCACTTGAGTCTCCTGAGAGCTCGTGGGAAA 212
||||||||||||||||||||| ||| |||||||| |||||| |||||||||||||||||
Sbjct 120 GTCTCGGCTTTGTCTCGTACCAAAAATTGTCACTTCAGTCTCGTGAGAGCTCGTGGGAAA 179
Query 213 TCCAGCTTCCTCACTCGCAGCACCGCTACTGATGAAGCTGTTGAAACTAGTAGTAACAGT 272
||||||||| || ||| |||||||||||| | |||||||||||||| ||||||||||||
Sbjct 180 TCCAGCTTCTTCGTTCGTAGCACCGCTACTCAAGAAGCTGTTGAAACCAGTAGTAACAGT 239
Query 273 GGATTGGATTTGGTTGAGGTTGGATTCTTGTCTGGTGTTCATGGCCTT-CAAGGCGAGAT 331
| ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 240 GAATTGGATTTAGTTGAAGTTGGATTCTTGTCTGGTGTTCATGG-CTTACAAGGCGAGAT 298
Query 332 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCTAAGCCTGGTAGAAGATG 391
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 TTGCATAAAACCAAACACTGATTTTCCTGATTTACGTTTCTCCAAGCCTGGTAGAAGATG 358
Query 392 GTTAAAACAACAATTGTTGGGACAAGATAAGATTGATGAGGTTGAATTAGTCGAAGGAAG 451
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 359 GTTAAAACAACAATTGATGGGACAAGATAAGATTGATGAGGTTGAATTAGTTGAAGGAAG 418
Query 452 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGACGATGTTGATCA 511
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 ACCTCATCCTGCGCAGAAGAGTTGGATTCTTAAGTTTCGAGGGTTGGATGATGTTGATCA 478
Query 512 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTGAGACAACTCGTTGGTGCAACTCTGCTTGCTGAGGACGATGATCGTCCTGAGCTTGA 538
Query 572 TGAAGGA-GAATTTTACTCTCGAGATCTTGTAGGCATGAGAGTTCTTCTCAAGGAGACCG 630
|| | || |||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 539 TG-ATGATGAATTTTACTCTCGTGATCTTGTAGGCATGAAAGTTCTTCTCAAGGAGACGG 597
Query 631 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACATG 690
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 GTCAACTTGTTGGAACTGTTGCTAATATTTTCGACAATGGAGGAAATGATCTTCTACACG 657
Query 691 TTTTGCTTGACTCATCCATGGAAGTCTGCAATGGGAATGCAAAGACCAATCAGCTTGTTT 750
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 658 TTTTGCTTGACTCATCCATGGAAGTCTGCAACGGGAGTGCAAAGACCAATCAGCTTGTGT 717
Query 751 GGATACCTTTTGTAGATGCAATTGTTCCTGATGTTGATTTGGAAAGAAAGGAGATGTATA 810
|||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 718 GGATACCTTTTGTAGACGCAATTGTTCCTGATGTTGATTTAGAAAGAAAAGAGATGTATA 777
Query 811 TAACTCCACCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 870
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TAACTCCCCCGAAGGGACTCCTCGAGGTGAATATGCGAGCAGATGATCGGTCCAAGAAAG 837
Query 871 AAAGGCGGCAGCTTGAATGGAAAGAAAGaaaaaaaCAGCAGAAGCGCCTTATTGCTGCTA 930
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 838 AAAGGCGGCAGCTTGAATGGAAAGAAAGAAAAAAGCAGCAGAAGCGTCTTATTGCTGCTA 897
Query 931 AAAAGAAGTTATGTGAAATGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 990
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAAAGAAGTTATGTGAATTGGAGCAAAAGCATGTGTTTGATGGATTAAGGTTTGGAGAAA 957
Query 991 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTAACGTAAACTCCACACTACTTCAGA 1050
||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 958 AGTCTCAAAGGAATTTACTTGCTGATCATATCCTTGATGTAAACTCCACACTGCTTCAGA 1017
Query 1051 AAGCTTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAACTGAGGAAATCAATG 1110
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1018 AAGCGTTGCAAAGTATTGACACCTCATCGAAGAGATGGAATGTAATTGAGGAAATCAATG 1077
Query 1111 CA-CTGAGAGCTAGAGTATCGGAATGTAATCTGAGTGTGTCACGAGAATGCCTTAGTTTT 1169
| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1078 -AGCTGAGAGCTAGAGTATCGGAATGTACTCTGAATGTGTCACGAGAATGCCTTAGTTTT 1136
Query 1170 GATGCAAGCAAAGAGAACATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAATCTG 1229
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1137 GATGCAAGCAAAGAGAAAATGGGTGATAACTTCAGTTTCCTTCAACAAGGGCAAAGTCTA 1196
Query 1230 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAATGAAGAACCA 1289
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1197 TTCTCTGAGGGTAAAGTTTCTATTTGTTTGGTTCTCAATGATCACGAGAACGAACAACCA 1256
Query 1290 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCACGCACTACTTGATGAGGAGCAGAGGTTC 1349
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1257 GAAGGTGAGAATGGTGTAGTCTCGTACCTTCATACACTACTTGATGAGGAGCAGAGTTTC 1316
Query 1350 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCATT 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 ATAAAGGAAGAAGATCGCGCTTGCGTGCCACTTGTCATAGTTTCCCCTGAACATACCGTT 1376
Query 1410 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGA-GTCAGAAAAGAT 1468
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1377 GAAGCTCTGCAGAAGCTATTTCAGGATAATGATCATTTTGGATTTGAAG-CAGAAAAGAT 1435
Query 1469 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTTTGCAGCTCACCAGAGGAACCGAAAAA 1528
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1436 CTGGATTCTCAAAGAAGAAACGCTTCCAGTAGTATGTAGCTCACCAGAGGAACCGAAAAA 1495
Query 1529 GCACAAAATTTTGATGAAATCTCCATGGGAGATACTTGAGTCCCCGGTTGGCTCTGGAGG 1588
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1496 GCACAAGATTTTGATGAAATCTCCATGGGAGATACTTAAGTCCCCGGTTGGCTCTGGAGG 1555
Query 1589 AGTCTTGAGCATCCTTGCTTCACATGGAACTACAGACTCTCTTTCCACCCTGGGAATCAA 1648
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1556 AGTCTTGAGCATCCTTGCTTCACATGGAATTACAGACTCTCTTTCCAGTCTGGGAATCGA 1615
Query 1649 TTATCTTCAGGTACACAGTATTGAAACAAAACCACAACCGTCACAACATTACATCAATCC 1708
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1616 TTATCTTCAGGTACACAGCATTGAAACAAAACCACAACCTTCGCAACATTACATCAATCC 1675
Query 1709 CATGCTTGTTGG-TTT-CGTGAGCGCAAGAGGAGCAGAGATTGGGATCCAAGTGACCGAA 1766
||||| ||||| ||| | | || |||| ||| || |||||||||||||| |||||| ||
Sbjct 1676 GATGCTCGTTGGATTTGC-T-AGTGCAAAAGGTGCTGAGATTGGGATCCAGGTGACCAAA 1733
Query 1767 GAATCTGAACTCAAGAACTTGGAAATGACATTCTCAATGAAGTTTCTGAAGAGATTAAAG 1826
||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1734 GAATCTGTATTCAAGAACTTGGAAATGGCATTCTCAATGAAGTTTTTGAAGAGATTAAAG 1793
Query 1827 GGAAAAATCGAGTTTGAAGCTGTCATGAAGATGAATTCACATGTTCAGAATGTTGAAAAG 1886
|| |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||
Sbjct 1794 GGCAAAATCGAGTTTGAAGCTGTTATGAAGATGCACTCACATGTTCAGAAGGTTGAAAAG 1853
Query 1887 GAGTGGGTTGAGTCAGTACCATCAGAACCAAACTCGTTTGAGTTTCGTTCTGATATTTAC 1946
|||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| | |
Sbjct 1854 GAGTGGGTTGAGTCCGTACCATCAGAACCGAACTCGTTTGAGTTTCATTCTGATATATGC 1913
Query 1947 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATTACCGTTTAG 2006
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1914 AGAGTCTTGAGTGAATGTTCTTCATCAGCTAAGATTTGTTTGATGAACATCACAGTTTAG 1973
Query 2007 AACTTGTACATTTTGCTACTTAGTTGTTT-GTCCTCACATCTAAAAAGCT 2055
||| |||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1974 AACATGTATATTTTGCTACTTAGTT-TTTCGTCCTCACATCTAAAAAGCT 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77704099800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5