BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46570.1 Length=1963 Score E Sequences producing significant alignments: (Bits) Value Ahg494321 jgi|Araly1|494321|fgenesh2_kg.8__137__AT5G46570.1 3217 0.0 > Ahg494321 jgi|Araly1|494321|fgenesh2_kg.8__137__AT5G46570.1 Length=1984 Score = 3217 bits (1742), Expect = 0.0 Identities = 1909/1986 (96%), Gaps = 25/1986 (1%) Strand=Plus/Plus Query 1 ACCTCTATTTTTTCAAGTCTGCAGCTTTTTGAAGCTATATTTTTCAGA------TCT-T- 52 |||||||||||||||| ||||||||||||||||||||||||||||||| ||| | Sbjct 1 ACCTCTATTTTTTCAACTCTGCAGCTTTTTGAAGCTATATTTTTCAGATCTTTCTCTCTC 60 Query 53 TCACTCTCTCTCTAGCTACTTCTTTTTGTCTTTAAGTTTTCAAATTTTATTAAATTTTTA 112 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TCTCTCTCTCTCTAGCTACTTCTTTTTGTCTTCAAGTTTTCAAATTTTATTAAATTTTTA 120 Query 113 T-ATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAGCCCCAAATCAAATC 171 | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 121 TAATTCTACTGCCTCCTCAGCTTCTCTCACAAAGCACAAATCCAAACCCCGAATCAAATC 180 Query 172 CCACCATTG-TTTTATTACCTCAATCCAAGAACACTAGACACAAC-AAAAATCTCTGTTT 229 ||||||||| ||||||||||||||||||||||||| | |||| || |||||||||||||| Sbjct 181 CCACCATTGTTTTTATTACCTCAATCCAAGAACACAAAACAC-ACAAAAAATCTCTGTTT 239 Query 230 CTTATCCAAATTTCTGATCTTTGTGGAGAAC-AA----T-A----TTTTGATTGGATGTG 279 |||||||||||||||||||||||| |||||| || | | |||| ||| |||||| Sbjct 240 CTTATCCAAATTTCTGATCTTTGTTGAGAACAAATTGTTCATTTTTTTTTATT-GATGTG 298 Query 280 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTTCCTTCTTCTGATGATCCATCA 339 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 299 AGACAAATGGGTTGTTTACATTCCAAAACTGCTAATCTACCTTCTTCTGATGATCCATCA 358 Query 340 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTC 399 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 359 GCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAAGAAATCCAAAATTTC 418 Query 400 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATT 459 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 419 AAAGAATTTGAACTAAATGAGTTGAGGAAAGCAACAAATGGGTTTAGCCCTAGCTGCATT 478 Query 460 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTCGTTTACAGAGGGAAGCTTGAAGGGAAT 519 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 479 GTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTGGTTTACAGAGGGAAGCTTGAAGGGAAT 538 Query 520 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTG 598 Query 580 GTGGAAGCGACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTTAGTTTGATCGGTTGC 639 || ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 599 GTCGAAGCAACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTCAGTTTGATTGGTTGC 658 Query 640 TGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCA 699 || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 659 TGCGCTGAGGGAGATGAGAGATTGTTGGTAGCAGAGTATATGCCCAATGATACTCTCTCA 718 Query 700 AAGCATCTCTTCCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 759 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 AAGCATCTCTTTCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCA 778 Query 760 GACTATATTGCAGAAGCACTTGATTACTGCAATATTGAGAACCGAAAAATCTATCATGAC 819 |||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 779 GACTTTATTGCACAAGCACTTGATTACTGCAATATCGAGAACCGAAAAATCTATCATGAC 838 Query 820 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGT 898 Query 880 CTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCT 939 ||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||| Sbjct 899 CTTATGAAGAACAGTAGAGATGGAAAAAGCTACAGTACCAACTTAGCTTATACTCCACCT 958 Query 940 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATT 999 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 959 GAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATCTTCAGTTATGGAACCATT 1018 Query 1000 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCCCTTGATATCATAAGA 1059 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1019 CTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCTCTTGATATCATAAGA 1078 Query 1060 GGGAAAAATGCTTTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGATGAT 1119 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 GGGAAAAATGCATTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGAAGAT 1138 Query 1120 GCGACTAAATTAGTTGATCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1179 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GCGACTAAATTAGTTGAGCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCA 1198 Query 1180 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCT 1258 Query 1240 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTT 1318 Query 1300 GGAAAGGCCTGTGCAAAGATGGACCTTGCGACATTTCACGACATTTTGCTTAAAACCGGT 1359 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1319 GGAAAGGCCTGTGCAAAGATGGACCTTGCCACATTTCACGACATTTTGCTTAAAACCGGT 1378 Query 1360 TACAGAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1419 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 TACAGAGACGAGGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTG 1438 Query 1420 CAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAG 1479 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1439 CAGGAGATGCTCAACACAAAAAAGTTCGGGGACATTGCTTTCCGAGACAAGGATTTCAAG 1498 Query 1480 AACTCAATTGAATACTACTCCAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1539 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1499 AACTCAATTGAATACTACTCAAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTT 1558 Query 1540 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 TTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGAT 1618 Query 1600 GCAATGCAGGCACAGGTGTGCATACCAGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1659 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1619 GCAATGCAGGCACAGGTGTGCATACCCGAATGGCCAACAGCTTTTTACTTGCAGGCTTTA 1678 Query 1660 GCGCTCTCAAAGCTCGGAATGGAGACTGATGCTCAAGATATGCTCAACGATGGCGCTGCA 1719 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 1679 GCGCTCTCAAAGCTCGGAATGGAGACGGATGCTCAAGATATGCTCAATGATGGCGCAGCA 1738 Query 1720 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATTAGA-GGAAGTCCCAAATA 1778 ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 1739 TATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAAGCTATAAAAAGGAAGTCCCAAATA 1798 Query 1779 TTTATGGGTCTTTTCAGACTGTAACTGAAAGGTGTGTATGCATGTAAGAGAGAGATGGAA 1838 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1799 TTTATGGGTCTTTTCAGACTGTAACTGAAAATTGTGTATGCATGTAAGAGAGAGATTGAA 1858 Query 1839 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCtttttttGCATGAATCTTTATGAAAAGT 1898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 TGTGTTGTTTACTTTTGTGAAATGAGAGCTTCTTTTTTTGCATGAATCTTTATGAAAAGT 1918 Query 1899 CAAATCTTTTGGGG-AAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1957 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 CAAATCTTTTGGGGGAAAGAGAGAATAAGACTGCAAATAACTAATTTGATTCCTTCTTCC 1978 Query 1958 TTATGG 1963 |||||| Sbjct 1979 TTATGG 1984 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73780804565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5