BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46620.1 Length=979 Score E Sequences producing significant alignments: (Bits) Value Ahg494314 jgi|Araly1|494314|fgenesh2_kg.8__130__AT5G46620.1 1066 0.0 > Ahg494314 jgi|Araly1|494314|fgenesh2_kg.8__130__AT5G46620.1 Length=868 Score = 1066 bits (577), Expect = 0.0 Identities = 659/698 (94%), Gaps = 8/698 (1%) Strand=Plus/Plus Query 243 AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT 235 Query 303 TGAAGAAGTTAACGGGTATACTTGGTTTTGGTCATAACGATGGTGGTGGTGGTCATGGAG 362 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 236 TGAAGAAGTTAACGGGTATACTTGGGTTTGGGCATAACGATGGTGGTGGTGGTCATGGAG 295 Query 363 CTGTGAGAGATGAAGATGGTGATGGTGGAGATAACAACACTGGAACTGTTTCTGGTGATG 422 |||| | ||||||||||||||||||||||||||||| | |||| | ||||||||||||| Sbjct 296 CTGTAAAAGATGAAGATGGTGATGGTGGAGATAACA-C--TGGAGCAGTTTCTGGTGATG 352 Query 423 GAGATAAACGTCGGGAAGAGAATCAGACGAGATTTCGTGAAACTGGAC--C-AAGGAAAG 479 |||||||||||||||| || ||||||||||| || ||||||||||||| | |||||||| Sbjct 353 GAGATAAACGTCGGGAGGATAATCAGACGAGGTTCCGTGAAACTGGACTTCCAAGGAAAG 412 Query 480 GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCGAATCCTGGTCCTATTCTTCAGC 539 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 413 GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCTAATCCTGGTCCTATTCTTCAGC 472 Query 540 CTTGTGCTGCTTTAGACGGTGGTGTTCAGGGACTACGTTGGTACTCGATGCGGCTTAAGA 599 |||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||| Sbjct 473 CTTGTGCTGCTTCAGATGGTGGTATTCAGGGACTACGTTGGTACTCAATGCGGCTTAAGA 532 Query 600 TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTAGAAGACCAAAACTGCAAGACTTTAC 659 |||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| Sbjct 533 TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTGGAAGATCATAACTGTAAGACTTTAC 592 Query 660 CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA 652 Query 720 AACTTCAGCCATTAATGCATTGAACAATGAAAACCAAGGAGAAAGATTTGCTGAATAGTG 779 ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 653 AACTTCAGCCACTAATGCATTGAACAATGAGCACCAAAGAGAAAGATTTGCTGATTAGTG 712 Query 780 TGTGATTGAATCAGAGAAAGGTTAGAACTTGTGTTTCATTAATTTCGATATCAATCCATT 839 || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 713 TG--ATTGAATCAGAGAAAGGTTAGAACTTATGTTTCATTAATTTCGAGATCAATCCATT 770 Query 840 AGATTCTTGAGAACTTATAATGTTATTTAACTGTGAATTTAGTTTCTGAAAATAGACAGT 899 |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 771 TGATTCTTGAGCACTTAAAATGTTATTTAACTGTGAATTTAGTTTTTGAAAATAGACAGT 830 Query 900 GATTCTCTTTGGGATTATCTAAACACATTTGTGCAATT 937 ||||||||||||||||||||||| |||||||||||||| Sbjct 831 GATTCTCTTTGGGATTATCTAAAAACATTTGTGCAATT 868 Score = 200 bits (108), Expect = 2e-50 Identities = 134/145 (92%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 69 AAGAAGATTAACACAGTGTTCACgagagagagagaTTAAAGACAGAGATTT-CTGGGTTT 127 |||||||||||||||||||||||||| | || ||||||| ||||||||||| |||||||| Sbjct 37 AAGAAGATTAACACAGTGTTCACGAG-G-GATAGATTAAGGACAGAGATTTTCTGGGTTT 94 Query 128 TAACAGTAGG-AAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAGCAAAAATC 186 ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 95 TAACAATAGGGAAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAG-AAA--TC 151 Query 187 GGGAGAGGAAAGGGATATTCGAAAA 211 | ||||||||||||||||||||||| Sbjct 152 GAGAGAGGAAAGGGATATTCGAAAA 176 Score = 71.3 bits (38), Expect = 1e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1 GAAGATCTTGCTCGATCCGTCTTTGATCCaaaaaaaaa 38 |||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAGATCTTGCTCGATCCGTCTTTGATCCAAAAAAAAA 38 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36369262818 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5