BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G46620.1

Length=979
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494314 jgi|Araly1|494314|fgenesh2_kg.8__130__AT5G46620.1         1066    0.0  


> Ahg494314 jgi|Araly1|494314|fgenesh2_kg.8__130__AT5G46620.1
Length=868

 Score = 1066 bits (577),  Expect = 0.0
 Identities = 659/698 (94%), Gaps = 8/698 (1%)
 Strand=Plus/Plus

Query  243  AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  AAAAGCTGTTAAATTTGAGGGCTTTAGATCGAATTTGATATCTGGGGTTAATGGGTTTTT  235

Query  303  TGAAGAAGTTAACGGGTATACTTGGTTTTGGTCATAACGATGGTGGTGGTGGTCATGGAG  362
            ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  236  TGAAGAAGTTAACGGGTATACTTGGGTTTGGGCATAACGATGGTGGTGGTGGTCATGGAG  295

Query  363  CTGTGAGAGATGAAGATGGTGATGGTGGAGATAACAACACTGGAACTGTTTCTGGTGATG  422
            |||| | ||||||||||||||||||||||||||||| |  |||| | |||||||||||||
Sbjct  296  CTGTAAAAGATGAAGATGGTGATGGTGGAGATAACA-C--TGGAGCAGTTTCTGGTGATG  352

Query  423  GAGATAAACGTCGGGAAGAGAATCAGACGAGATTTCGTGAAACTGGAC--C-AAGGAAAG  479
            |||||||||||||||| || ||||||||||| || |||||||||||||  | ||||||||
Sbjct  353  GAGATAAACGTCGGGAGGATAATCAGACGAGGTTCCGTGAAACTGGACTTCCAAGGAAAG  412

Query  480  GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCGAATCCTGGTCCTATTCTTCAGC  539
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  413  GTTTTGGTGTACCGGTTCAAGTTGCTGTTGAACGGTCTAATCCTGGTCCTATTCTTCAGC  472

Query  540  CTTGTGCTGCTTTAGACGGTGGTGTTCAGGGACTACGTTGGTACTCGATGCGGCTTAAGA  599
            |||||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct  473  CTTGTGCTGCTTCAGATGGTGGTATTCAGGGACTACGTTGGTACTCAATGCGGCTTAAGA  532

Query  600  TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTAGAAGACCAAAACTGCAAGACTTTAC  659
            |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct  533  TTGATGAAGACGGAGATGTTGCAGATGAGTTCTTGGAAGATCATAACTGTAAGACTTTAC  592

Query  660  CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAAGAAAGTGCAAAACAAAAGCTGCAAAAGTGAGAGGTTTAGTGATATCTTCTGATGGGA  652

Query  720  AACTTCAGCCATTAATGCATTGAACAATGAAAACCAAGGAGAAAGATTTGCTGAATAGTG  779
            ||||||||||| ||||||||||||||||||  ||||| |||||||||||||||| |||||
Sbjct  653  AACTTCAGCCACTAATGCATTGAACAATGAGCACCAAAGAGAAAGATTTGCTGATTAGTG  712

Query  780  TGTGATTGAATCAGAGAAAGGTTAGAACTTGTGTTTCATTAATTTCGATATCAATCCATT  839
            ||  |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  713  TG--ATTGAATCAGAGAAAGGTTAGAACTTATGTTTCATTAATTTCGAGATCAATCCATT  770

Query  840  AGATTCTTGAGAACTTATAATGTTATTTAACTGTGAATTTAGTTTCTGAAAATAGACAGT  899
             |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct  771  TGATTCTTGAGCACTTAAAATGTTATTTAACTGTGAATTTAGTTTTTGAAAATAGACAGT  830

Query  900  GATTCTCTTTGGGATTATCTAAACACATTTGTGCAATT  937
            ||||||||||||||||||||||| ||||||||||||||
Sbjct  831  GATTCTCTTTGGGATTATCTAAAAACATTTGTGCAATT  868


 Score =  200 bits (108),  Expect = 2e-50
 Identities = 134/145 (92%), Gaps = 7/145 (5%)
 Strand=Plus/Plus

Query  69   AAGAAGATTAACACAGTGTTCACgagagagagagaTTAAAGACAGAGATTT-CTGGGTTT  127
            |||||||||||||||||||||||||| | || ||||||| ||||||||||| ||||||||
Sbjct  37   AAGAAGATTAACACAGTGTTCACGAG-G-GATAGATTAAGGACAGAGATTTTCTGGGTTT  94

Query  128  TAACAGTAGG-AAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAGCAAAAATC  186
            ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||  ||
Sbjct  95   TAACAATAGGGAAATGAATATTGTTGGATTAAGAAGCGATCGGAGAAAGTAG-AAA--TC  151

Query  187  GGGAGAGGAAAGGGATATTCGAAAA  211
            | |||||||||||||||||||||||
Sbjct  152  GAGAGAGGAAAGGGATATTCGAAAA  176


 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  1   GAAGATCTTGCTCGATCCGTCTTTGATCCaaaaaaaaa  38
           ||||||||||||||||||||||||||||||||||||||
Sbjct  1   GAAGATCTTGCTCGATCCGTCTTTGATCCAAAAAAAAA  38



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36369262818


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5