BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46730.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494306 jgi|Araly1|494306|fgenesh2_kg.8__122__AT5G46730.1 1463 0.0
> Ahg494306 jgi|Araly1|494306|fgenesh2_kg.8__122__AT5G46730.1
Length=1019
Score = 1463 bits (792), Expect = 0.0
Identities = 969/1049 (92%), Gaps = 33/1049 (3%)
Strand=Plus/Plus
Query 12 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTGTTTTTTCTTATACTCGGCGTTAG 71
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1 AAACACAATGGTTTCTCTCAAAGCTTTCTCAACTGTCTTTTTTCTTATACTCGGTGTTAG 60
Query 72 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGCCAAGCTTCTGGCggtggagg 131
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 61 CATTTGCTACGCCACTAGCCGCAATCTTTTGAACTACGGAGAAGCTGCTGGCGGTGCAGG 120
Query 132 acatggtggtggtggaggttctggaggagtgagtagtggaggttatggaggagagagtgg 191
||| ||||||| || | | ||| || | | ||||||| ||||||
Sbjct 121 ACA---TGGTGGT---GG---T------G-GAG--GT----G-CA-GGAGGAGTGAGTGG 156
Query 192 tggtggttatggGGGCGGTAGTGGAGAAGGAGCTGGTGGAGGATATGGAGGTGCTGAAGG 251
||||| |||||| || ||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 157 TGGTGCTTATGGTGGTGGTAGTGGAGAAGGAGCTGGTGGTGGATATGGAGGTGCTAAAGG 216
Query 252 GTATGCTAGTGGTGGCGGTAGTGGTCACGGTGGAGGTGGTGGTGGAGCTGCTTCCTCCGG 311
||||||||||||||| ||| |||| || |||||||| ||||||||||||||||| |||||
Sbjct 217 GTATGCTAGTGGTGGTGGTGGTGGGCATGGTGGAGGCGGTGGTGGAGCTGCTTCTTCCGG 276
Query 312 TGGTTATGCTAGTGGAGCAGGAGAaggaggaggtggtggttatggtggagctgctggtgg 371
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 277 TGGTTATGCTAGTGGAGGAGGAGAAGGAGGAGGTGGTGGTTATGGTGGAGCGGCTGGTGG 336
Query 372 tcatgctggtggtggaggtggtggtagtggaggcggtggaggaTCAGCTTACGGTGCTGG 431
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 337 TCATGCTGGTGGTGGAGGTGGTGGTAGCGGAGGCGGTGGAGGATCAGCTTACGGTGCTGG 396
Query 432 AGGAGAGCATGCTAGTGGTTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGCAAG 491
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 AGGAGAGCATGCTAGTGGCTATGGAAACGGAGCTGGTGAAGGTGGTGGCGCCGGTGGAAG 456
Query 492 TGGGTATGGAGGGGGAGCTTATGGAGGCGGCGGTGGTCATGGAGGAGGAGGTGGTGGAGG 551
|| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 457 TGAGTATGGAGGTGGAGCTTATGGAGGCGGCGGTGGCCATGGAGGAGGAGGAGGTGGAGG 516
Query 552 ATCAGCAGGAGGGGCTCACGGCGGTAGTGGTTATGGAGGCGGTGAAGgaggaggagctgg 611
||| |||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct 517 ATCTGCAGGAGGGGCTCA---TGGTGGTGCTTACGGAGGCGGTGAAGGAGGAGGAGCTGG 573
Query 612 tggtggagggtctcatggtggtgccggaggctatggaggtggtggcggtggaggaagtgg 671
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 574 TGGTGGAGGGTCTCATGGGGGTGCTGGAGGCTATGGAGGTGGTGGCGGTGGAGGAAGTGG 633
Query 672 aggaggaggagcttacggcggaggaggagcacatggaggtggctatggaagtggtggtgg 731
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 634 AGGAGGAGGAGCTTACGGCGGAGGAGGAGCACATGGAGGTGGTTATGGAAGTGGTGCTGG 693
Query 732 tgaaggaggtggctatggaggaggtgcagcaggaggatatggtggtggcggtggaggagg 791
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 694 TGAAGGAGGTGGTTATGGAGGAGGTGCTGCAGGAGGATATGGTGGTGGCGGTGGAGGAGG 753
Query 792 agaaggaggaggCGGTAGTTAcggtggtgaacatggaggtggttcaggcggaggtcacgg 851
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 AGAAGGAGGAGGCGGTGGTTACGGTGGTGAACATGGAGGTGGTTCAGGCGGAGGTCACGG 813
Query 852 tggtggtggtggtcacggcgg---tggaggCTATGCCCCATGAGGAAACCAACTTAAGAT 908
||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 814 TGGTGGTGGCGGTCACGGCGGCGGTGGAGGCTATGCCCCATGAAGAAACCAACTTAAGAT 873
Query 909 CAGCCAAAAGAAAGGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTAAAAT 968
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 874 CAGCCAAAAGAAACGCTGAAAAATAAAAGATAATCTGTGGAGGGGTATACAAATTTAAAT 933
Query 969 GCCTACTATTTCAAAACATTTTGTATCCATTATTATTGAACGTTGTATTGTATTTTCCTA 1028
||||| | || || |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 934 GCCTA-T-TT-CATAACATTTTGTATCCATTATTATTGAACGTTGTGTTGTATTTTCATA 990
Query 1029 ATAATTGAATATTTTATTGTCTTATCATT 1057
|||||||||||||||||||||||||||||
Sbjct 991 ATAATTGAATATTTTATTGTCTTATCATT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5