BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G46760.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value Ahg948265 jgi|Araly1|948265|scaffold_800152.1 1472 0.0 Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1 484 7e-136 > Ahg948265 jgi|Araly1|948265|scaffold_800152.1 Length=1986 Score = 1472 bits (797), Expect = 0.0 Identities = 932/994 (94%), Gaps = 21/994 (2%) Strand=Plus/Plus Query 1 ATGAACGGCACAACATCATCAATCAACTTCTTGACCTCCGACGATGACGCGTCGGCGGCG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 21 ATGAACGGCACAACATCATCAATCAACTTCTTAACCTCCGACGATGACGCGT---CGGCG 77 Query 61 GCTATGGAAGCTTTCATTGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCAC-A 119 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 78 GCTATGGAAGCTTTCATCGGAACAAACCACCACTCATCTCTCTTTCCTCCACCACCACAA 137 Query 120 --A-CA--ACCA---------CCTCAGCCTCAGTTCAACGAAGATACTCTTCAACAACGT 165 | || |||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 138 CCACCACCACCACCTTCTTTTCCTCAAACTCAATTCAACGAAGATACTCTTCAACAACGT 197 Query 166 CTCCAAGCTTTAATAGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 225 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 198 CTCCAAGCTTTAATCGAATCCGCCGGAGAAAACTGGACTTACGCTATCTTCTGGCAGATC 257 Query 226 TCACACGACTTCGATTCATCCACCGGAGATAACACAGTGATCCTCGGCTGGGGAGATGGT 285 ||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct 258 TCACACGACTTCGATTCTTCCACCGGAGACAACACTGTAATCCTCGGCTGGGGAGATGGA 317 Query 286 TACTACAAAGGAGAGGAAGATAAAGAGAAGAAGAAGAACAACACCAACACGGCGGAGCAA 345 |||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 318 TACTACAAAGGAGAAGAAGACAAAGAGAAGAAGAAGAACAACGCGAACACGGCGGAGCAA 377 Query 346 GAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAATCTCCGGCGGAATTGGGGTT 405 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 378 GAGCACCGGAAAAGAGTAATCCGTGAGCTTAATTCGTTAATCTCCGGCGGAATTGGAGTT 437 Query 406 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 TCCGATGAATCAAACGATGAAGAAGTAACAGATACTGAATGGTTCTTCTTAGTTTCGATG 497 Query 466 ACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGAGAATCTTTCTTAAACTCTCGTGTG 525 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 498 ACTCAAAGCTTCGTTAACGGTGTTGGACTTCCCGGAGAATCTTTCTTAAACTCTCGTGTG 557 Query 526 ATTTGGTTATCCGGGTCTGGTGCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 585 ||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 558 ATTTGGTTATCTGGGTCGGGTTCTTTAACCGGGTCGGGTTGTGAAAGAGCGGGTCAAGGT 617 Query 586 CAGATTTACGGGTTAAAGACGATGGTGTGTATCGCGACTCAAAACGGCGTCGTTGAGCTT 645 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 618 CAGATTTACGGGTTGAAGACGATGGTGTGTATCGCGACGCAAAACGGCGTCGTTGAGCTT 677 Query 646 GGTTCGTCGGAGGTTATAAGTCAAAGCTCAGATCTGATGCATAAAGTTAACAACTTGTTT 705 ||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 678 GGTTCGTCGGAAGTTATAAGTCAAAGCTCAGATCTGATGGATAAAGTTAATAACTTGTTT 737 Query 706 AATTTCAACAACGGT-G--GTGGAAACAATGGTGTTGAAGCTTCTTCGTGGGGTTTTAAT 762 || |||||||||||| | |||| |||||||||| |||||||||||| |||||||||||| Sbjct 738 AACTTCAACAACGGTGGTAGTGGTAACAATGGTGGTGAAGCTTCTTCTTGGGGTTTTAAT 797 Query 763 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 822 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 798 CTGAATCCAGATCAAGGAGAGAATGATCCAGCTTTGTGGATTAGTGAACCGACGAACACC 857 Query 823 GGAATCGAATCTCCGGCGAGGGTTAATAATGGTAATAACTCGAATTCTAATTCTAAGTCT 882 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 858 GGAATCGAATCTCCGGCGAGGGTTAGTAATGGTAATAACTCGAATTCGAATTCTAAGTCT 917 Query 883 GATTCTCATCAAATTTCTAAGCTTGAGAAGAATGATATTAGCTCTGTAGAGAATCAGAAT 942 ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct 918 GATTCTCATCAAATTTCGAAGCTTGATAAGAATGATATTAGCTCTGTGGAGAATCAGAAT 977 Query 943 CGTCAAAGTTCGTGTCTTGTCGAGAAAGATTTGA 976 ||||||||||| |||||||| |||| |||||||| Sbjct 978 CGTCAAAGTTCTTGTCTTGTTGAGAGAGATTTGA 1011 Score = 1249 bits (676), Expect = 0.0 Identities = 765/808 (95%), Gaps = 6/808 (1%) Strand=Plus/Plus Query 978 CTTTCAAGGTGGGTTGTTGAAATCTAATGAGACTTTGAGTTTCTGTGGTAATGAGAGTAG 1037 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1046 CTTTCAAGGTGGGTTGTTGAAATCGAATGAGACTTTGAGTTTCTGTGGTAACGAGAGTAG 1105 Query 1038 TAAGAAGAGAACTTCGGTATCTAAAGGGAGTAATAATGATGAAGGGATGCTTTCGTTTAG 1097 |||||||| || |||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 1106 CAAGAAGAGGTCTCCGGTTTCGAAAGGGAGTAATAATGATGAAGGGATGCTTTCTTTTAG 1165 Query 1098 TACTGTGGTTAGATCAGCTGCG-AA-----TGATTCGGATCATTCTGATCTTGAAGCATC 1151 |||||||||| |||| |||||| || |||||||||||||||||||||||||||||| Sbjct 1166 TACTGTGGTTCGATCCGCTGCGAAATCGGTTGATTCGGATCATTCTGATCTTGAAGCATC 1225 Query 1152 TGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1211 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1226 GGTTGTTAAGGAAGCGATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAG 1285 Query 1212 GAAACCGGCGAATGGgagagaagagccgttgaatcatgttgaagcagagaggcagagaag 1271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 GAAACCGGCGAATGGGAGAGAAGAGCCGTTGAATCATGTTGAAGCAGAGAGGCAGAGAAG 1345 Query 1272 agagaagttaaaccagagaTTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGAT 1331 ||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| Sbjct 1346 AGAGAAGTTAAACCAGAGATTTTATTCTTTGAGAGCTGTGGTTCCTAATGTTTCGAAGAT 1405 Query 1332 GGATAAAGCTTCGCTTCTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1391 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1406 GGATAAAGCTTCTCTTCTCGGAGATGCTATTTCGTATATCAATGAGCTTAAGTCGAAGCT 1465 Query 1392 GCAGCAAGCGGAGTCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1451 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1466 GCAACAAGCGGAATCTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGTAAGGA 1525 Query 1452 AGGGAATAATGGGAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAAGTTCGAATCAAGA 1511 ||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct 1526 AGGAAATAATGGGAAAGGTGGCGGGTCGAGGGCGAAAGAACGGAAAAGTTCGAATCAAGA 1585 Query 1512 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGAT 1571 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1586 TTCTACGGCGAGTTCTATAGAAATGGAGATTGATGTGAAGATCATAGGTTGGGATGTGAT 1645 Query 1572 GATACGTGTACAATGCGGCAAGAAAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAA 1631 |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| || || Sbjct 1646 GATACGTGTACAATGCAGCAAGAAGGATCATCCCGGTGCTAGATTCATGGAAGCGCTCAA 1705 Query 1632 GGAATTGGATTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1691 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1706 GGAACTGGATTTGGAAGTGAATCACGCGAGTTTATCCGTTGTGAATGATTTGATGATTCA 1765 Query 1692 ACAAGCTACGGTGAAGATGGGGAGCCAATTTTTCAATCATGACCAGCTCAAAGTTGCTTT 1751 ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1766 ACAAGCTACCGTGAAGATGGGGAGCCAGTTTTTCAATCATGACCAGCTTAAAGTTGCTTT 1825 Query 1752 GATGACGAAAGTCGGAGAAAACTATTGA 1779 ||||||||||||||||||||||||||| Sbjct 1826 AATGACGAAAGTCGGAGAAAACTATTGA 1853 > Ahg493087 jgi|Araly1|493087|fgenesh2_kg.7__2520__AT4G17880.1 Length=2103 Score = 484 bits (262), Expect = 7e-136 Identities = 502/613 (82%), Gaps = 35/613 (6%) Strand=Plus/Plus Query 1168 ATTGTTGTTGAGCCACCGGAGAAGAAGCCGAGGAAACGGGGGAGGAAACCGGCGAATGGg 1227 ||||| ||||| |||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 1293 ATTGTGGTTGA---ACCGGAGAAGAAACCGAGGAAACGAGGGAGAAAACCGGCGAATGGA 1349 Query 1228 agagaagagccgttgaatcatgttgaagcagagaggcagagaagagagaagttaaaccag 1287 ||||||||||| ||||||||||| || |||||||| ||||||||||||||||| || ||| Sbjct 1350 AGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAAGAGAGAAGTTGAATCAG 1409 Query 1288 agaTTCTACTCTTTGAGAGCTGTTGTTCCTAACGTTTCGAAGATGGATAAAGCTTCGCTT 1347 ||||| ||||||||||||||||| |||||||| || || ||||||||||||||||| ||| Sbjct 1410 AGATTTTACTCTTTGAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTT 1469 Query 1348 CTCGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCGAAGCTGC-AGCAAG-CGGAGT 1405 | ||||||||||||||||||||||||||||||||||| ||| ||| | ||| | || | Sbjct 1470 TTAGGAGACGCGATTTCGTATATCAATGAGCTTAAGTCTAAGTTGCTA--AAGGCTGAAT 1527 Query 1406 CTGATAAAGAGGAGATTCAGAAGAAGCTAGATGGGATGAGT-AAGGAAG-GGAATAATGG 1463 |||||||||| ||| | |||||| || | |||||||||| | || || | || ||| Sbjct 1528 CTGATAAAGAAGAGCTGCAGAAGCAGATTGATGGGATGA-TCAAAGAGGCGGGG-AATTC 1585 Query 1464 GAAAGGTTGCGGGTCAAGGGCAAAAGAACGGAAAA-GTTCGAATCAAGATTCTACGGCGA 1522 |||| ||| ||| | || | || || |||| ||| || |||||| || || | Sbjct 1586 GAAAAGTT-CGGTT-AA----A---GATCG-AAAATGTTTGATTCAAGAATCG--GGTGT 1633 Query 1523 GTTCTATAGAAATGGAGATTGATGTTAAGATCATAGGTTGGGATGTGATGATACGTG-TA 1581 | | ||||| |||||| ||||||| ||||| || |||||||||| |||||| | | | Sbjct 1634 GGTG-ATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAG-GATT 1691 Query 1582 CAATGCGGCAAGA-AAGATCATCCCGGTGCTAGGTTCATGGAAGCACTTAAGGAATTGGA 1640 |||||| | |||| || ||||||| ||||||| |||||||||||||| ||||||||||| Sbjct 1692 CAATGCAGTAAGAGAA-ATCATCCTGGTGCTAAATTCATGGAAGCACTCAAGGAATTGGA 1750 Query 1641 TTTGGAAGTGAATCATGCGAGTTTATCCGTTGTGAATGAT-TTGATGATTCAACAAGCTA 1699 ||||||||||||||||||||||||||| || ||||||||| || ||||| |||||||| | Sbjct 1751 TTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTT-ATGATCCAACAAGCGA 1809 Query 1700 CGGTGAAGATGGGGAGCCAATTTTTCA-ATCATGACCAGCTCAAAGTTGCTTTGATG-AC 1757 | ||||| ||||||| || ||||||| | || || |||||||| |||||| | ||| | Sbjct 1810 CTGTGAAAATGGGGAATCAGTTTTTCACA-CAAGATCAGCTCAAGGTTGCTCTAATGGAT 1868 Query 1758 GAAAGTCGGAGAA 1770 |||||||||||| Sbjct 1869 -AAAGTCGGAGAA 1880 Score = 294 bits (159), Expect = 1e-78 Identities = 445/577 (77%), Gaps = 44/577 (8%) Strand=Plus/Plus Query 274 TGGGGAGATGGTTACTACAAAGGAGAGGAAGATAAA--GAG-AAGAAGAAGAACAACA-C 329 |||||||||||||| ||||||||||| ||||| ||| || |||||||| | ||| | | Sbjct 414 TGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAATCTAGAAAGAAGAA-ACCAA-ATC 471 Query 330 CAAC-AC-G--GCGGAGCAAGAGCATCGGAAAAGAGTAATACGTGAGCTTAACTCGTTAA 385 || | | | || || ||||||||||| || ||||| ||||| || || ||||| |||| Sbjct 472 CAGCTTCTGCAGCTGAACAAGAGCATCGTAAGAGAGTGATACGAGAACTCAACTCTTTAA 531 Query 386 TCTCCGGCGG-AATTG-GG-GTTTCCGATGAATC-AAACGATGAAGAAGTAACAGATACT 441 ||||||| || | | || | |||||| | | ||||||||||| ||||||||| Sbjct 532 TCTCCGGTGGTGGTGGAGGAGGAGGAGATGAAGCTGGA-GATGAAGAAGTTACAGATACT 590 Query 442 GAATGGTTCTTCTTAGTTTCGATGACTCAAAGCTTCGTTAACGGTGTTGGTCTCCCCGGA 501 |||||||||||||||||||| ||||| || ||||| || || || |||| | || || Sbjct 591 GAATGGTTCTTCTTAGTTTCAATGACACAGAGCTTTGTCAATGGCACTGGTTTACCTGGT 650 Query 502 GAATCTTTCTTAAACTCTCGTGTGATTTGG-TTATCCGGGTCTGGTGCTTTAACCGGGTC 560 || |||||| ||||| ||||||| || || |||||| ||||||| | || || Sbjct 651 CAAGCTTTCTCGAACTCGAACACGATTTGGCTT-TCTGGGTCTAATGCTTTAGCTGGATC 709 Query 561 GGGTTGTGAAAGAGCGGGTCAAGGTCAGATTTACGGGTTA-AAGACGATGGTGTGTATCG 619 ||||||| ||||| |||||||||||||||| |||||| || || ||||||||| | | Sbjct 710 AAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAA-ACAATGGTGTGTGTAG 768 Query 620 CGACTCAAAACGGCGTCGTTGAGCTTGGTTCGTCGGAGGTTATA-AGTCAAAGCTCAGAT 678 ||||| | ||||| |||||||||||||||||||||||| ||||| | |||||| |||||| Sbjct 769 CGACTGAGAACGGTGTCGTTGAGCTTGGTTCGTCGGAGATTATACA-TCAAAGTTCAGAT 827 Query 679 CT-GATGCATAAAGTTAACAACTTGTTTAATTTCAACAACGGTGGTGGAAACAATGGTGT 737 || | || |||||||| ||| ||| ||| |||| |||||||| | | | || Sbjct 828 CTTGTTG-ATAAAGTTGACACCTT-TTT-----CAAC---GGTGGTGGTGA-A-TC-TG- 873 Query 738 TGAAGCTTCTTCGTGGGGTTTTAATCTGAATCCAGATCAAGGAGAGAATGATCCAGCTTT 797 | ||||| | || |||| ||| |||||||||||||||||||||||||||||| ||| Sbjct 874 -G----TTCTT-G-GGCGTTT-AATTTGAATCCAGATCAAGGAGAGAATGATCCAGGTTT 925 Query 798 GTGGATTAGTGAACCGACGAACACCGGAATCGAATCT 834 ||||||||||||||| | ||||| || | |||||| Sbjct 926 GTGGATTAGTGAACCTAATAACACTGGTGTTGAATCT 962 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66772199485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5