BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46800.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494297 jgi|Araly1|494297|fgenesh2_kg.8__113__AT5G46800.1 1677 0.0
> Ahg494297 jgi|Araly1|494297|fgenesh2_kg.8__113__AT5G46800.1
Length=1266
Score = 1677 bits (908), Expect = 0.0
Identities = 1045/1111 (94%), Gaps = 10/1111 (1%)
Strand=Plus/Plus
Query 227 ACCTTTCTCGGATCCATCTGATATCGATTGGATTCTCTCTAATCAAT--C--GTTGAAAT 282
|||||| ||||||||||||||| |||| |||||| |||||||||||| | || |||||
Sbjct 157 ACCTTTATCGGATCCATCTGATCTCGAGTGGATTTTCTCTAATCAATCCCTGGTAGAAAT 216
Query 283 GGCGGATGCGTGGAAGGATTTAGCTTCAGGGACTGTTGGAGGAGCTGCTCAACTAGTTGT 342
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 217 GGCGGATGCGTGGAAGGATTTAGCTTCAGGGACTGTTGGAGGAGCGGCTCAGCTAGTTGT 276
Query 343 TGGTCATCCATTTGACACTATCAAGGTCAAACTTCAGAGCCAACCGACTCCAGCACCAGG 402
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGGTCATCCATTTGACACAATCAAGGTCAAACTTCAGAGCCAACCGACTCCAGCACCAGG 336
Query 403 CCAACTTCCAAGGTACACCGGTGCAATCGATGCGGTTAAACAGACCGTTGCTTCTGAAGG 462
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 337 CCAACTTCCAAGGTACACTGGTGCAATCGATGCCGTTAAACAGACCGTTGCTTCTGAAGG 396
Query 463 AACCAAAGGTTTGTATAAAGGTATGGGAGCTCCACTTGCAACCGTTGCTGCCTTCAATGC 522
| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 397 AGCTAAAGGTTTGTACAAAGGTATGGGAGCTCCTCTTGCAACCGTTGCTGCCTTCAATGC 456
Query 523 GGTTTTGTTCACTGTGAGAGGTCAAATGGAAGGGCTGCTTAGGTCTGAAGCTGGAGTTCC 582
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 457 GGTTTTGTTCACCGTGAGAGGTCAAATGGAAGGACTGCTTAGGTCTGAAGCTGGAGTTCC 516
Query 583 TTTGACCATTAGTCAACAGTTTGTG-GCCGGTGCAGGCGCTGGTTTCGCTGTTTCGTTCC 641
||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 517 TTTGACCATTAGTCAACAGTTTGTGTG-CGGCGCTGGCGCTGGTTTCGCTGTTTCGTTCC 575
Query 642 TTGCTTGTCCTACCGAGTTGATCAAGTGCAGGTTGCAAGCACAAGGT---GCATTAGCTG 698
||||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||
Sbjct 576 TTGCTTGTCCTACCGAGTTGATCAAATGCAGGCTGCAAGCACAAGGTGCAGCAGTAGCTG 635
Query 699 GTGCCTCTACTACAAGCTCAGTGGTTGCAGCCGTGAAATACGGTGGACCAATGGATGTAG 758
| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 636 GCGCCTCTACCACAAGCTCAGTGGTTGCAGCCATGAAATACGGGGGACCAATGGATGTAG 695
Query 759 CCCGTCATGTCCTACGATCAGAAGGAGGAGCACGAGGTCTATTCAAAGGTTTATTCCCTA 818
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 696 CCCGTCATGTCCTACGATCTGAAGGCGGAGCACGAGGTCTATTCAAAGGTTTATTCCCGA 755
Query 819 CATTCGCCCGTGAAGTCCCGGGAAATGCAACAATGTTTGCAGCCTACGAAGCTTTCAAGC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CATTCGCCCGTGAAGTCCCGGGAAATGCAACAATGTTTGCAGCCTACGAAGCTTTCAAGC 815
Query 879 GGTTTTTAGCCGGTGGTTCAGACACTTCAAGCTTAGGACAAGGGTCATTGATCATGGCGG 938
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 816 GGTTTTTAGCCGGTGGTTCAGACACTTCAAGCTTAGGACAAGGGTCATTAATCATGGCGG 875
Query 939 GTGGAGTCGCTGGTGCTTCTTTTTGGGGAATAGTATATCCGACAGATGTTGTGAAGAGTG 998
|||||||||||||||| | ||||||||||| |||||||| || ||||| ||||||||||
Sbjct 876 GTGGAGTCGCTGGTGCGGCGTTTTGGGGAATTGTATATCCAACCGATGTCGTGAAGAGTG 935
Query 999 TTCTTCAAGTCGACGATTACAAAAACCCGAGATACACGGGGTCGATGGATGCTTTTCGGA 1058
||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 936 TTCTTCAAGTCGACGATTATAAAAACCCGAAATACACAGGGTCGATGGATGCTTTTCGGA 995
Query 1059 AGATTCTGAAATCTGAAGGAGTTAAAGGTTTGTATAAAGGATTTGGTCCAGCTATGGCTA 1118
||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 996 AGATTCTGAAATCTGAAGGTGTTAAAGGTTTGTATAAAGGGTTCGGTCCAGCAATGGCTA 1055
Query 1119 GGAGTGTTCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCAAGCTTGG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GGAGTGTTCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCAAGCTTGG 1115
Query 1179 GATAAACCGGTTCGGTTTGGGTTTAACTGTTGGTTCGATTTCTGAATGTTCCATTGCGAT 1238
|||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||
Sbjct 1116 GATAAACCGGCTCGGTTTGGGTTTAACTGTTGGTCCGATTACTGGATGTTCCATTGCGAT 1175
Query 1239 TAACCTCTC-TGTTTTTAGATTTGATTCTTAAAAAATTTCTGCAAAATTTATGTACCATT 1297
|||||| | |||||||||||||||||||| ||| ||||||||||||||||||| | ||
Sbjct 1176 TAACCTTTTATGTTTTTAGATTTGATTCTTTGAAATTTTCTGCAAAATTTATGTATCTTT 1235
Query 1298 TACACAGTTTATTTCAGTATTTCTTACACAG 1328
|||||||||||||||| ||| ||||||||||
Sbjct 1236 TACACAGTTTATTTCAATATCTCTTACACAG 1266
Score = 97.1 bits (52), Expect = 3e-19
Identities = 62/66 (94%), Gaps = 4/66 (6%)
Strand=Plus/Plus
Query 128 ttttggattttATCTG---ATCACTCGTTTTGTGTCTCTGAATCTCTATCCCGTGGATTC 184
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 91 TTTTGGATTTTATCTGATCATCACTCG-TTTGTGTCTCTGAATCTCTATCCCGTGGATTC 149
Query 185 GCATCT 190
||||||
Sbjct 150 GCATCT 155
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 14 AAACAAAACTTCAGTCTCTGCAAAGCTCCATCCTTTGTGGTTGTGT 59
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2 AAACAAAACTTCTGTCTCTGCAAAGCTCCATCCTTTGTGGTTGTGT 47
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5