BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G46840.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494293 jgi|Araly1|494293|fgenesh2_kg.8__109__AT5G46840.1 2399 0.0
> Ahg494293 jgi|Araly1|494293|fgenesh2_kg.8__109__AT5G46840.1
Length=1685
Score = 2399 bits (1299), Expect = 0.0
Identities = 1538/1645 (93%), Gaps = 50/1645 (3%)
Strand=Plus/Plus
Query 8 ctctccctctttcttcctcttctctcATTGAAATCGAACGAGGATGGGGAAGAAGAAATC 67
||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 1 CTCTCTCTCTCTCTTCCTCTTCTCTCATTGAAATCGGACGACGATGGGGAAGAAGAAGTC 60
Query 68 GAAGGTAACGGAGCCGGAATCTCAAAACGATGAATCTCAG-----A-CA---ATCTTCTC 118
||||| ||||||| ||||||||| |||||||||||||||| | || ||||||||
Sbjct 61 GAAGGAAACGGAGACGGAATCTCTAAACGATGAATCTCAGACCAAATCAGGCATCTTCTC 120
Query 119 CACTCTCTTCTCCGGCGAGGTTG--AAA---G---C-TCTGGCTTTGCGAGTCTCTTCTC 169
|||||||||||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct 121 TACTCTCTTCTCCGGCGAGGTTGCTAAAGGCGAAACTTCTGGCTTTGCGAGTCTCTTCTC 180
Query 170 CGCTGATAACCCTTTCCGGCGAAAACAACCTCAAGAAATCAAAGAGTCGTCAATTCCTGA 229
|| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 181 CGATGATAACCCTTTCCGGCGAAAAAAACCTCAAGAAATCAAAGAGTCGTCAAGTCCCGA 240
Query 230 TGagaagaaaggggataaacgaaatgcagagaacgaagaagaagaagaagaaacagattt 289
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 241 TGAGAAGAAAGGGGATAAACGAAATGCAGAGAACGAAGAAG--G-AGAAGAAACAGTTTT 297
Query 290 gcctgtgaagacgaagaaatctaaaaagga-aaaaaagCTTACAGATTCCGGCGAC---- 344
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 298 GCCTGTGAAGACGAAGAAATCTAAAAAGGAGAAAAAA-CTTACAGATTCCGGCGACGATG 356
Query 345 -----GAGAAAGAGACG-ATTTCGGAGGCTGTAGAAGAAAGTGGGTTGGTTTCAaagagg 398
|||||||||||| |||| ||| | ||||||||||| |||||||| ||||||||||
Sbjct 357 GTGTTGAGAAAGAGACGAATTT-GGATGTTGTAGAAGAAACTGGGTTGGATTCAAAGAGG 415
Query 399 aagaagaggaagagagatgagattgagaacgaatacgagacgaagaagtatggaagcgtt 458
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AAGAAAAGGAAGAGAGATGAGATTGAGAACGAATACGAGACGAAGAAGTATGGAAGCGTT 475
Query 459 gagatgaaagagaagaaggttggtgagaagaggaagaaagCTGATGAAGTAGCTGATACA 518
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 --GA-G--A-AGAAGAAGGTTGGTGAGAAGAGGAAGAAAGCTGATGAAGTAGCTGATACA 529
Query 519 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATGGTTTCAAAGGAAGGTTTTGATGATGAGAGTAAGCTTCTTAGAACTGTTTTCGTTGGG 589
Query 579 AATTTGCCTTTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAGTTTAGTAAATTTGGTGAG 638
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 590 AATTTGCCATTGAAGGTTAAGAAAAAAGTCATCTTGAAGGAATTTAGTAAATTCGGTGAG 649
Query 639 GTTGAATCTGTGAGGATACGCTCTGTGCCTATTGTTGATTCGAAGAGGACAAGGAAAGGA 698
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 650 GTTGAATCTGTGAGGATACGCTCTGTGCCAATTGTCGATTCGAAGAGGACAAGGAAAGGA 709
Query 699 GCTATAATGCTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 758
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GCTATTATGTTGAAACAAATCAATGAGAAAGCTTCAAGTGTTCATGCTTATGTTGTGTTT 769
Query 759 GAAACAGAGCAATCTGCTGCAG-CTTCTCTGGCACATAACATGTCTCTGATTGATGGGAA 817
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 770 GAAACAGAGCAATCTGCTG-AGGCTTCTCTGGCTCATAACATGTCTCTGATTGATGGGAA 828
Query 818 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGGCATGATGATAC 877
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 829 TCATGTCCGCGTTGATAGAGCATGTCCGCCTCGTAAGAAACAGAAAGGTCAGGATGATAC 888
Query 878 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTCGATGTGAAGGA 937
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 889 TCATTTGTATGATCCTAAGAGGACAGTCTTTATGGGTAATCTCCCTTTTGATGTGAAGGA 948
Query 938 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 CGAGGAAGTGTATCAACTGTTTACGGGTAAGAGTAATCTGGAGAACAGTATAGAAGCTGT 1008
Query 998 TCGTGTCATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1057
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TCGTGTTATTAGAGATCCTCACTTGAACATTGGGAAAGGAATAGCTTACGTCTTGTTTAA 1068
Query 1058 AACACGGGAAGCTGCAAATCTCGTACTCAAGAAAGGATACTTGAAGCTTAGAGAAAGAGA 1117
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1069 AACACGGGAAGCTGCAAATCTCGTAATCAAGAAAGGATATTTGAAGCTTAGAGAAAGAGA 1128
Query 1118 GTTACGGATTTCTCGAGTCAAACCTGAT--A-CGCCATCAAAGAGAAAGAGCAATCCGTC 1174
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 1129 GTTACGGATTTCTCGAGTCAAACCTGATGCAACGCCATCAAAGAGAAAGAGCAATCCTTC 1188
Query 1175 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAGAAGGACAAAGTGGTCACACCAACTCC 1234
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1189 TGAAGCTTACTCGCCGGCCCAGAAAAGACTGCAAAAGGACAAAGTGGTCACACCAACTCC 1248
Query 1235 AACAGGGAAGGCTAATCTTTCATATCAAGGTGTACGAGCTTCAAAATCTGGTGATGATAA 1294
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1249 TACGGGGAAGGCTAATCTTTCATATCAAGGTGTAAGAGCTTCAAAATCTGGTGATGATAA 1308
Query 1295 GAA-AACACCTTATCAGAAAAGCTCCGCGCAGACAAAGATGAGACCTAGAGGTAGCAGCA 1353
||| || ||||||||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 1309 GAAGAAT-CCTTATCAGAAAAGCCCCGCACAGGCAAAGATGAGACCTAGAGGTAGCAGCA 1367
Query 1354 GCAATGA---CAACAAAAAATCTGGGAATAATAGTGCTTCAAAGGAAAGAAGTCAGAAGC 1410
||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 1368 GCAATGAAGACAACAAAAAATCTGGGAATAATAGTGCTTTGAAGCAGCGAAGTCAGAAGC 1427
Query 1411 GACCAGCTGTTGCAGCAAGAAAGGCGAAAGCAAACGCAAAAGGTTCAAAAGAGAGCGGTG 1470
| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1428 GGCCAGCGGTTGCAGCAAGAAAGGCGAAAGCAAACTCAAAAGGTTCGAAAGAGAGCGGTG 1487
Query 1471 GTAAGCGGTTTGCAGGGACAAAGCGTAAACAAGAAAACCGGACGCCTGAAAGCTTCTCTA 1530
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1488 GTAAGCGATTTGCAGGGACTAAGCGTAAACAAGAAAACCGAACGCCTGAAAGCTTCTCTA 1547
Query 1531 AGAAGaaaaaaaCAAAACGGTTTTAGACGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1590
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1548 AGAAGAAGAAAACAAAACGGTTTTAGGCGGTTTCTTTCAACCATAATGGTGAACCTCTTT 1607
Query 1591 CTTCTTCCTTAGTTTTGATACTAGT 1615
| |||||||||||||||||||||||
Sbjct 1608 CATCTTCCTTAGTTTTGATACTAGT 1632
Score = 93.5 bits (50), Expect = 5e-18
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1652 TGATATACTGTAATGTTGCAACAATTATGTTTTCGTGCAAGTTTAAAAGGAAA 1704
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1633 TGATATACTGTAATGTTGCAACAATTATGATTTCGTGCAAGTTTAAAAGGAAA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5