BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47110.1 Length=1088 Score E Sequences producing significant alignments: (Bits) Value Ahg948204 jgi|Araly1|948204|scaffold_800091.1 1033 0.0 Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1 560 7e-159 > Ahg948204 jgi|Araly1|948204|scaffold_800091.1 Length=838 Score = 1033 bits (559), Expect = 0.0 Identities = 764/854 (89%), Gaps = 50/854 (6%) Strand=Plus/Plus Query 59 gagagagaTCT-TAACaa-aaaaaTGTCTATATCCATGGCGTTATTCTCTCCGCCGATCT 116 ||||||||||| | ||| ||||||||| ||||||||||||||||||||||| |||| Sbjct 1 GAGAGAGATCTCT-TCAAGAAAAATGTCAATATCCATGGCGTTATTCTCTCCACCGA--- 56 Query 117 CTTCCTCACTTCAGAACCCTAATCTCATCCCCAAGATCTCAACCTCTCTTCTCTCCACCA 176 | |||||| ||||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 57 -----T-ACTTCAAAACCCTAATCTCATCCCCAAGATCTCATCTTCTCTCCTCTCCACCA 110 Query 177 AGCGTTTCTCTCTAATCTCCGTCCCTAGAGCTTCCTCCGACAATGGTACGACTTC-CC-- 233 ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| || Sbjct 111 AGCGTTTCTCTCTCATCTACGTCCCTCGAGCTTCCTCCGACAATGGTACGACTTCACCAA 170 Query 234 C--C-G-T-C-GT---GG-A------G------A--TTCCGAAGCCTGCTT-CTGTGGCT 268 | | | | | || || | | | |||||||||||| | |||||||| Sbjct 171 CGTCTGCTTCAGTCTCGGCAACCACCGTCGTGGAGATTCCGAAGCCTG-TGGCTGTGGCT 229 Query 269 GTAGAGGAAGTTCCAGTTAAATCTCCAGCCGAAAGCTCCTCCGCTTCTGAAAACGGCGCC 328 |||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||| Sbjct 230 GTAGAGGAAGTTCCGGTTAAATCTCC-G--GAAAGCTCCTCCGCTTCTGGAAACGGCGCC 286 Query 329 GTTGGAGGTGAAGCGACTGATTCGAGTACTG---AGACGGTAATCAAATATCA-GAATGC 384 ||||||||||||| |||||||| | |||||| ||||||||||||||| | | || ||| Sbjct 287 GTTGGAGGTGAAGAGACTGATTTGGGTACTGCTGAGACGGTAATCAAATTTGAAGA-TGC 345 Query 385 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCAAAACTGATTG 444 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 346 GAAGTGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGGAAAACAGATTG 405 Query 445 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 GGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATAACCCGGAAAC 465 Query 505 AACGAGTAACGACGAGCTTGTTGTCTTCGATACTTCGATTATTCCATGGTGGGCATGGAT 564 || ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| Sbjct 466 GACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATTCCATGGTGGGCATGGAT 525 Query 565 GAAGAGATACCATCTACCTGAAGCTGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 624 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 526 GAAGAGATACCATCTACCCGAAGCCGAACTTCTCAATGGTCGTGCTGCGATGATAGGGTT 585 Query 625 CTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTGATCAAATGGGAAA 684 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 586 CTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGACTTGTTGATCAAATGGGGAA 645 Query 685 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCTTCATCCGTAAGAA 744 |||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| Sbjct 646 TTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAGTTCTTTTTATCCGCAAGAA 705 Query 745 TGAAGATTTAGACAAACTTAAGGATCTGTTCGATGAGACTACGTTATATGACAAACAATG 804 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 706 CGAAGATTTAGACAAACTTAAGGATCTGTTTGATGAGACAACGTTATATGACAAACAATG 765 Query 805 GCAAGCTGCATGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTC 864 |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GCAAGCAGCGTGGAAAGAGCCAGATTCATCAACAGTTTCTTCAAAGAAGTGAACAAGTTT 825 Query 865 TTACAATCTTTCAT 878 ||||| |||||||| Sbjct 826 TTACA-TCTTTCAT 838 > Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1 Length=948 Score = 560 bits (303), Expect = 7e-159 Identities = 445/511 (87%), Gaps = 19/511 (4%) Strand=Plus/Plus Query 318 AAAACGGCGCCGTTGGAGGTGAAGCGACTG-ATTCGAGTACTGAGACGGTAATCAAATAT 376 |||| | |||||||| |||||||| || || | | | || |||||||| ||||||| | Sbjct 268 AAAATGTCGCCGTTGAAGGTGAAGAGA-TGAAAAC--G-ACGGAGACGGTTATCAAAT-T 322 Query 377 -CAGAATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGCA 434 ||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 323 CCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAAGATGGAA 381 Query 435 AAACTGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTTGAAGATA 494 |||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | Sbjct 382 AAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTAGAAGAGA 441 Query 495 ACCCGGAAACAACGAGTAACGACGAGCTTGTTG-TCTTCGATACTTCGATTATTCCATGG 553 | || |||||||||||||||||||| | || | | |||||||| ||||||||||||||| Sbjct 442 ATCCAGAAACAACGAGTAACGACGAACCAGT-GCTTTTCGATACATCGATTATTCCATGG 500 Query 554 TGGGCATGGATGAAGAGATACCATCT-ACCTGAAGCTGAACTTCTCAA-TGGTCGTGCTG 611 ||||| ||||| ||||||||||| || ||||||||||||||| || || ||||||||||| Sbjct 501 TGGGCTTGGATTAAGAGATACCA-CTTACCTGAAGCTGAACT-CTTAAATGGTCGTGCTG 558 Query 612 CGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGTCTTACCGGAGTAGGACTTGTTG 671 |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | Sbjct 559 CGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGACTTGTCG 618 Query 672 ATCAAATGGGAAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCTGGAGTTCTCT 731 |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| | | Sbjct 619 ATCAAATGGGGAATTTCTTCTGCAAGACACTCTTGTTTGTGGCTGTGGCTGGAGTTTTGT 678 Query 732 TCATCCGTAAGAATGAAGAT-TTAGACAAACTTAAGGATCT-GTTCGATGAGACTACGTT 789 | |||||||||||||| ||| || || ||||| ||| | || ||| ||||||||||| || Sbjct 679 TTATCCGTAAGAATGAGGATGTT-GATAAACTCAAGAA-CTTGTTTGATGAGACTACATT 736 Query 790 ATATGACAAACAATGGCAAGCTGCATGGAAA 820 |||||| || ||||||||||| || |||||| Sbjct 737 ATATGATAAGCAATGGCAAGCAGCTTGGAAA 767 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40524660771 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5