BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47120.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494266 jgi|Araly1|494266|fgenesh2_kg.8__82__AT5G47120.1 1269 0.0
Ahg946464 jgi|Araly1|946464|scaffold_702693.1 752 0.0
Ahg948945 jgi|Araly1|948945|scaffold_800832.1 363 2e-99
Ahg493119 jgi|Araly1|493119|fgenesh2_kg.7__2552__AT4G17580.1 361 8e-99
> Ahg494266 jgi|Araly1|494266|fgenesh2_kg.8__82__AT5G47120.1
Length=984
Score = 1269 bits (687), Expect = 0.0
Identities = 792/843 (94%), Gaps = 5/843 (1%)
Strand=Plus/Plus
Query 1 AATATTTTCATTAATCGATTCTCAAAGTCAAGC----aaaaaaaaCGAAACAATGGATGC 56
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AATATCTTCGTTAATCGATTCTCAAAGTCAAGCAAAAAAAAAAAACGAAACAATGGATGC 60
Query 57 GTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGAAGCTGGAGCTATGATTCTCTTAA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGAAGCTGGAGCTATGATTCTCTTAA 120
Query 117 AAACTTCCGTCAGATTTCTCCAGCCGTTCAGAATCATCTTAAACGGGTTTATTTGACCTT 176
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||
Sbjct 121 AAACTTCCGTCAGATTTCTCCCGCCGTTCAGAATCATCTTAAACGGGTTTATCTCACGTT 180
Query 177 ATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGCTCTGGAATATCGG 236
||| ||||||||||| || ||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 181 ATGCTGTGCTCTTGTTGCATCTGCGTTTGGAGCTTATCTTCATGTGCTCTGGAATATTGG 240
Query 237 CGGTATTCTTACAACGATTGGATGTATTGGAACTATGATTTGGCTCCTTTCATGTCCTCC 296
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 241 CGGTATTCTTACAACGATTGGATGCGTTGGAACTATGATTTGGCTCCTTTCTTGTCCTCC 300
Query 297 TTATGAACACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCTGCTGTTCTTGAAGGTGCTTC 356
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTATGAACAACAAAAGAGACTTTCTCTTCTGTTTGTGTCTGCTGTTCTTGAAGGTGCTTC 360
Query 357 TGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTGACCCAAGCATCCTTATCACTGCATT 416
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGTTGGGCCCTTGATCAAAGTGGCAATTGATGTTGACCCAAGCATCCTTATTACTGCATT 420
Query 417 TGTTGGAACTGCGATAGCGTTTGTCTGTTTCTCAGCAGCAGCAATGTTAGCAAGACGCAG 476
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 421 TGTTGGAACTGCAATAGCGTTTGTCTGTTTCTCGGCTGCAGCAATGTTAGCAAGACGCAG 480
Query 477 GGAGTATCTCTACCTTGGAGGACTGCTTTCATCTGGCTTGTCTATGCTAATGTGGCTCCA 536
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 481 GGAGTATCTCTACCTTGGAGGACTACTTTCATCTGGCTTGTCCATGCTAATGTGGCTTCA 540
Query 537 GTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCTTTAAGTTTGAGTTGTACTTTGG 596
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTTGCCTCTTCGATCTTTGGTGGCTCTGCATCTATCTTTAAGTTTGAGTTGTACTTTGG 600
Query 597 ACTTTTGATCTTTGTGGGATACATGGTGGTGGACACACAAGAGATTATAGAAAAGGCACA 656
||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 601 ACTCTTGATCTTTGTGGGATACATGGTGGTGGATACACAGGAGATTATAGAGAAGGCACA 660
Query 657 CCTCGGTGACATGGACTATGTAAAACATTCGTTGACCCTTTTCACTGACTTTGTAGCTGT 716
|||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 661 CCTCGGCGACATGGACTACGTGAAACATTCATTGACCCTTTTCACCGACTTTGTAGCTGT 720
Query 717 GTTTGTTCGGATTCTCATCATAATGTTGAAGAACTCAGCAGATaaagaagagaagaagaa 776
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 GTTCGTTCGGATTCTCATCATAATGTTGAAGAACTCGGCAGATAAAGAAGAGAAGAAGAA 780
Query 777 gaaaaggagaaaCTGAGGGGATGTAAAGTAAATTTAACTTTATGGTTGTTATCGTGTGTG 836
|||||||||||||||||| ||||||| ||| || ||||||||||| || ||||||| ||
Sbjct 781 GAAAAGGAGAAACTGAGGCGATGTAA-GTAGATAGAACTTTATGGTGGTCATCGTGTTTG 839
Query 837 GCC 839
|||
Sbjct 840 GCC 842
Score = 187 bits (101), Expect = 1e-46
Identities = 130/144 (90%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 888 TTTCCACTAAAAAGGATCTGCTTGTTTCACTTCTGCACAAGTACCATCTTCAGATTGTAA 947
||||||||||||||||| |||||||| | ||||||||||| || || |||||||||||||
Sbjct 843 TTTCCACTAAAAAGGATTTGCTTGTTCCTCTTCTGCACAAATATCACCTTCAGATTGTAA 902
Query 948 ATGACTCGAGTGTTGTTCTTCTTTTCATAAACTTTTGTTCTTTAAGAGTTTGGTTCTACT 1007
||||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||
Sbjct 903 ATGACTCGAGTGTTGTTGTTCTTTTC-TAAACTTT-GTTGTTTAAGAGTTTGGTACTACT 960
Query 1008 GATTGCATCTTACCAAGCTAAGAA 1031
||| ||||||| |||||||||||
Sbjct 961 AATTTCATCTTATCAAGCTAAGAA 984
> Ahg946464 jgi|Araly1|946464|scaffold_702693.1
Length=801
Score = 752 bits (407), Expect = 0.0
Identities = 646/759 (85%), Gaps = 26/759 (3%)
Strand=Plus/Plus
Query 45 AACAATGGATGCGTTCTCTTCCTTCTTCGATTCTCA-ACCTGGTAGCAGAAGCTGGAGCT 103
||||||||| ||||||||||||||||| || ||||| | | |||| | || |||||||
Sbjct 17 AACAATGGAAGCGTTCTCTTCCTTCTTTGACTCTCAGA-ATCGTAG--G-AGTTGGAGCT 72
Query 104 ATGATTCTCTTAAAAACTTCCGTCAGATTTCTCCAGCCGTTCAGAATCATCTTAAACGGG 163
|||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 73 ATGATTCTCTCAAGAACTTCCGTCAGATCTCTCCGGCCGTGCAGAATCATCTTAAACGGG 132
Query 164 TTTATTTGACCTTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGC 223
||||| |||| ||||||||||||||||| || ||||| |||||||||||||||||| ||
Sbjct 133 TTTATCTGACGTTATGTTGTGCTCTTGTTGCATCTGCATTTGGAGCTTACCTCCATATGA 192
Query 224 TCTGGAATATCGGCGGTATTCTTACAACGATTGGATG-TATTGGAA-CTATGATTTGGCT 281
|||||| ||| || || ||||| || || | ||| | | |||||| | ||||||||| |
Sbjct 193 TCTGGACTATTGGTGGAATTCTCACTACTCTCGGAAGCT-TTGGAAGC-ATGATTTGGTT 250
Query 282 CCTTT-CATGTCCTCCTTAT--G-AA-CACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCT 336
||| || |||||| ||| | || || | ||| |||||||| ||||||||| | |||
Sbjct 251 GATTTCCA-CTCCTCCGTATCAGCAATCATC-AAAGAGGCTTTCCCTTCTGTTTCTCTCT 308
Query 337 GCTGTTCTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTGACCCA 396
||||||||| |||||||||| || || || ||||| |||||||| |||||||||||||||
Sbjct 309 GCTGTTCTTCAAGGTGCTTCAGTAGGTCCATTGATTAAAGTGGCCATTGATGTTGACCCA 368
Query 397 AGCATCCTTATCACTGCATTTGTTGGAACTGCGA-TAGCGTTTGTCTGTTTCTCAGCAGC 455
|||||||| |||||||||||||| ||||| || | | |||||||| |||||||| | ||
Sbjct 369 AGCATCCTGATCACTGCATTTGTGGGAACAGC-AGTGGCGTTTGTGTGTTTCTCGGTTGC 427
Query 456 AGCAATGTTAGCAAGACGCAGGGAGTATCTCTACCTTGGAGGACTGCTTTCATCTGGCT- 514
||||||||| ||||| || || ||||| || ||||||||||| |||||||| ||| |||
Sbjct 428 AGCAATGTTGGCAAGGCGTAGAGAGTACCTTTACCTTGGAGGTCTGCTTTCTTCT-GCTC 486
Query 515 TGTCTATGCTAATGTGGCTCCAGTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCT 574
|||| || || |||||||| || ||||||||||| |||||||| ||||| |||||| |||
Sbjct 487 TGTCCATCCTTATGTGGCTGCAATTTGCCTCTTCCATCTTTGGAGGCTCAGCATCTGTCT 546
Query 575 TTAAGTTTGAGTTGTACTTTGGACTTTTGATCTTTGTGGGATACATGGTGGTGGACACAC 634
||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 547 TTAAGTTTGAGCTATATTTTGGACTGTTGATCTTTGTGGGATACATGGTGGTGGACACAC 606
Query 635 AAGAGATTATAGA-AAAGGCACACCTCGGTGACATGGACTATGTAAAACATTCG-TTGAC 692
||||||| || || |||| ||||||| ||||||||||||||||| |||||||| || ||
Sbjct 607 AAGAGATAATCGAGAAAG-CACACCTAGGTGACATGGACTATGTCAAACATTCTCTT-AC 664
Query 693 CCTTTTCACTGACTTTGTAGCTGTGTTTGTTCGGATTCTCATCATAATGTTGAAGAACTC 752
|||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 665 CCTTTTCACTGATTTTGTTGCTGTGTTTGTTCGAATTCTCATCATCATGTTGAAGAACTC 724
Query 753 AGCAGATaaagaa-gagaagaagaagaaaaggagaaaCT 790
|| || || ||| ||||||||||||||||| |||||||
Sbjct 725 TGCTGACAA-GAAAGAGAAGAAGAAGAAAAGAAGAAACT 762
> Ahg948945 jgi|Araly1|948945|scaffold_800832.1
Length=332
Score = 363 bits (196), Expect = 2e-99
Identities = 218/229 (95%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 163 GTTTATTTGACCTTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTG 222
|||||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 70 GTTTATCTGACCTTATGTTGTGCTCGTGTTGCGTCTGCGTTTGGAGCTTACCTCCATGTG 129
Query 223 CTCTGGAATATCGGCGGTATTCTTACAACGATTGGATGTATTGGAACTATGATTTGGCTC 282
||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||||
Sbjct 130 CTCTGGAATATTGGCGGTAATCTTACAACGATTGGATGCGTTGTAACTATGATTTGGCTC 189
Query 283 CTTTCATGTCCTCCTTATGAACACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCTGCTGTT 342
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 190 CTTTCATGTCCTCCTTATGAACACCAAAAGAGACTTTCTCTTCTGTTTGTGTCTGCTGTT 249
Query 343 CTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTG 391
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTG 298
Score = 104 bits (56), Expect = 1e-21
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 34 aaaaaaaaCGAAACAATGGATGCGTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGA 93
|||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 AAAAAAAACGAAACCACAGATGCGTTCTCTTCCTTCTTCGATTCTCAACCTAGTAGCAGA 62
Query 94 AGCTGGAG 101
||||||||
Sbjct 63 AGCTGGAG 70
> Ahg493119 jgi|Araly1|493119|fgenesh2_kg.7__2552__AT4G17580.1
Length=740
Score = 361 bits (195), Expect = 8e-99
Identities = 454/574 (79%), Gaps = 38/574 (7%)
Strand=Plus/Plus
Query 175 TTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGCTCTGGAATATC 234
|||| || ||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 139 TTATTTTTTGCTCTTCTTGCGTCTGCGTTTGGAGCTTACCTCCATGTGCTCTGGAATATC 198
Query 235 GGCGGTATTCTTACAACGATTGGATGT-ATTGGAACTATGATTTGGCTCC-TTTCATGTC 292
|| || | | | || || |||||| | | |||||| ||||| ||| | | ||||| |
Sbjct 199 GGTGGAAATGTCACTACTCTTGGAT-TCACTGGAACCATGATCTGGTTGCGTTTCA---C 254
Query 293 CTCCTTATGAACACCAAAAAAGGCTTTCTC-TTCTGTTTGTGTCTGCTGTTCTTGAAGGT 351
|||||||| || |||| | |||||| || |||||||| | ||||| ||||| |||||
Sbjct 255 -TCCTTATG--CAGCAAAGA-GGCTTT-TCCTTCTGTTTCTCTCTGCCCTTCTTAAAGGT 309
Query 352 GCTTC-TGTTGGCCCCTTGATCAAAGT-GG-CAATTGATGTTGACCCAAGCATCCTTATC 408
||||| | |||| ||| |||||| || || || ||||| |||| ||||| |||| ||
Sbjct 310 GCTTCAT-TTGGTCCCATGATCAT-GTTGGTCA-TTGATTTTGATTCAAGCGTCCTGGTC 366
Query 409 ACTGCATTTGTTGGAACTGC-GATAGCGTTTGTCTGTTTCTCAGCAGCAGCAATGTTAGC 467
||||||||||| ||||| || | ||| ||||| |||||||| || ||||||||||| ||
Sbjct 367 ACTGCATTTGTGGGAACAGCAG-TAGTATTTGTGTGTTTCTCCGCTGCAGCAATGTTGGC 425
Query 468 AA-GACGCAGGGAGTATCTCTACCTTGGAGGACTGC--TTTCATCTGGCT-TGTCTATGC 523
|| | || || ||||| || ||||| |||| || | |||| | | | | |||| || |
Sbjct 426 AACG-CGTAGAGAGTACCTTTACCTCGGAG--CTTCACTTTCTTGTAG-TATGTCCATCC 481
Query 524 TAATG-TGGCTCCAGTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCTTTAAGTTT 582
| || ||| | | |||||||||| ||||| ||||||||| || || || | ||||||
Sbjct 482 TT-TGGTGGGTAAAAATTGCCTCTTCGATCTTCGGTGGCTCTACAACTGTCGTCAAGTTT 540
Query 583 GAGTTGTACTTTGGACTTTTGATCTTTGTGGGATACATGGTGGTGGACACACAAGA-GAT 641
||| | ||||||||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 541 GAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACA-GATGAT 599
Query 642 TATAGA-AAAGGCACACC-TCGGTGACATGGACTATGTAAAACATTCGTTGACCCTTTTC 699
|| || |||| |||||| | ||||| ||||||||||| ||||||| || ||| |||||
Sbjct 600 AATCGAGAAAG-CACACCAT-GGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
Query 700 ACTGACTTTG-TAGCTGTGTTTGTTCGGATTCTC 732
||| |||||| | || |||||||||| ||||||
Sbjct 658 ACTCACTTTGCTT-CTCTGTTTGTTCGAATTCTC 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5