BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47190.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1 1304 0.0 Ahg946470 jgi|Araly1|946470|scaffold_702699.1 577 6e-164 > Ahg494259 jgi|Araly1|494259|fgenesh2_kg.8__75__AT5G47190.1 Length=893 Score = 1304 bits (706), Expect = 0.0 Identities = 851/916 (93%), Gaps = 29/916 (3%) Strand=Plus/Plus Query 9 TCTTTACTCTGGTTTCGAGT-T-TGGGTTGTGCAAACATGGCGACGAGCTCTCATCTTCT 66 |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| Sbjct 1 TCTTTACTCTGGTTTCGAGTGTAGGGGTAGTGCAAACATGGCGACGAGCTCTCATCTTCT 60 Query 67 TCCTCAGGCATTGCATATGATACCGAGAACCCCTTCTTTCTCGTCGAAGAATTTAGGGGT 126 ||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| Sbjct 61 TCCTCAGACATTGCATATGATGCCGAGAATCCCTACTTTCTCGTCGAAGAATTTAGGGGT 120 Query 127 TTCTTCAATTCTACCACGAGCATCATCAGTGAACTCAAGACTATCAGTTTCTAGGGTTTT 186 |||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 121 TTCTTCAATTCTACCACGAGCATCATCAATCAACTCAAGATTATCAGTTTCTA------- 173 Query 187 TCTCAATCATTCGAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAAAGAGTT 246 | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 174 --TGAATCATTCTAGCTCCAATTTTGGTTTCGCCATCGATTCCAAGAAGAGAAGAGAGTT 231 Query 247 TATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCTGTTGTGGAGAATGCTGT 306 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 232 GATCGCTAAAGCTGAAGAGAGTACTGAAGGTGAAACTGAGGCAGTTGTGGAGAATGTTGT 291 Query 307 TGAAACTGAAGCGGAAGGAGAAGGAGAAGCCACTGTTGCGGCGGAGGAAGCTAAACCTCC 366 ||||||| | | || || ||||| |||| |||| ||||||||||||| |||| Sbjct 292 TGAAACT------G-A--AG--GG-GAAGCTGCTGTGGCGGAGGAGGAAGCTAAAACTCC 339 Query 367 GTGGAAGACGAGAGTCAAGCTCGGAGATATCATGGGGCTACTGAACAAGAAAGCTATTGA 426 | ||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 340 GAGGAAGGCGAGAGTCAAGCTCGGAGATATCATGGGAATATTGAACAAGAAAGCTATTGA 399 Query 427 GGTTGCAGAGACTGTAAGACCGGTTCCTGGACTTAGGACTGGGGATATTGTAGAAATCAA 486 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 400 GGTTGCAGAGAAAGTAAGACCGGTTCCTGGACTTAGGACAGGGGATATTGTAGAAATCAA 459 Query 487 ACTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 546 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 460 GCTGGAAGTTCCTGAGAACAAACGTAGGCTATCTATCTACAAAGGTATTGTGATGTCTAG 519 Query 547 ACAAAATGCAGGCATCCACACTACTATCCGTATCCGGAGGATTATTGCAGGCATTGGTGT 606 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 520 ACAAAATGCAGGCATCCACACTACTATTCGTATCCGGAGGATTATTGCAGGCATTGGTGT 579 Query 607 TGAAATCGTCTTTCCCATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 666 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 580 TGAAATCGTCTTTCCTATATACTCTCCCAACATAAAGGAGATAAAAGTGGTAAGTCACAG 639 Query 667 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 GAAAGTGAGAAGAGCAAGACTTTACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTT 699 Query 727 TAAATGATCACCAAA-CCCAACACCAGTCTTGTCTTGTGTTGT--C-TTCAATCTCCAAA 782 ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| Sbjct 700 TAAATGATCACCAAAACCCAACACCAGTCTTGTCTTGTGTTGTTACCTTCAATCTCCAAA 759 Query 783 GGTAGCTAGCTACTCTCttttctcttgtaataattgtttgtttgtttcgtcttttggatt 842 ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 760 GGTAG-TAGCTACTCTCTTT-CTCTTGTAATAATTGTTTGTTTGTTTTGTCTTTTGGATT 817 Query 843 tcatttcttttcatgtaatttACAGTAACAGTAATTTAAGAAAAGTAAATCAATGTTGAT 902 |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 818 TCATTTCTTTTCATGTAATTTACAGTAACAGTGCTCTAAGAAAAGTAAATCAATGTTGAT 877 Query 903 TGTTTTGATCTTGAGT 918 | |||||||||||||| Sbjct 878 TATTTTGATCTTGAGT 893 > Ahg946470 jgi|Araly1|946470|scaffold_702699.1 Length=718 Score = 577 bits (312), Expect = 6e-164 Identities = 580/704 (82%), Gaps = 40/704 (6%) Strand=Plus/Plus Query 44 ATGGCGACGAGCTCTCATCTTCTTCCTCAGGCATTGCATATGATACCGAGAACCCCTTCT 103 ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 21 ATGGCGACGAGCTTTCATCGTCTTCCTCAGGCATTGCATATGATACCGAGAAACCCTTCT 80 Query 104 TTCTCGTCGAAGAATTTAGGGGTTTCTTCAATTCTACCACGAGCATCATCAGTGAACTCA 163 || ||||||||||||||| ||||||| ||||| || | ||| |||| ||||| || Sbjct 81 CAATCATCGAAGAATTTAGGGTTTTCTTCGTTTCTATCATGCGCACCATCGGTGAATTCT 140 Query 164 AGACTATCAGTTTCTAGGGTTTTTCTCAATCATT-CGAGCTCCAATTTTGGTTTCGCCA- 221 | |||||||||||||| | | ||| ||||||| || |||| || ||||| ||| || Sbjct 141 CGTGTATCAGTTTCTAGGCTCTCTCTGAATCATTCCG-GCTCGAAATTTGGGTTC-TCAC 198 Query 222 TCGATTCCAAGAAGAGAAAAGAGTTTATCGCTAAAGCTGAAG-A-G-AGTACTGAAGGTG 278 ||||| | | | |||||| |||||| ||| || ||| |||| | | | ||||||| || Sbjct 199 TCGATACTAGGGTGAGAAATGAGTTTGTCGTTAGAGCAGAAGAAGGTAACACTGAAGCTG 258 Query 279 AAACT---GAGGCTGTTG-TGGAGAATGCTGTTGAAACTGAAGCGGAAGGAGAA-GGAGA 333 || || |||||||||| | || ||| | | || | | | ||||||| || | ||| Sbjct 259 AATCTGAAGAGGCTGTTGCT-GA-AAT-C-GCTG--A-T--A-CGGAAGG-CAATGTAGA 307 Query 334 AGCCACTGTTGCGGCGGAGGAAGCTAAACCTCCGTGGAAGA-CGA-GAGTCAAGCTCGGA 391 || | ||| || ||||||||||||| | ||| | ||| || ||||||||||| Sbjct 308 AG--A-AGTT-----GG-TGAAGCTAAACCTCAG-AGAAAACCGAGGA-TCAAGCTCGGA 356 Query 392 GATATCATGGGGCTACTGAA-CAAGAAAGCTATTGAGGTTGCAGAGACTGTAAGACCGGT 450 ||| |||||||| ||||||| | ||| ||| ||||||||| |||||| |||||||| || Sbjct 357 GATGTCATGGGGATACTGAATC-AGAGAGCAATTGAGGTTTCAGAGAAAGTAAGACCTGT 415 Query 451 TCCTGGACTTAGGACTGGGGATATTGTAGAAATCAAACTGGAAGTTCCTGAGAACAAACG 510 ||| | | | ||||| || |||||||||||||||||| |||||||||||||||||||||| Sbjct 416 TCCAGAAATCAGGACAGGAGATATTGTAGAAATCAAATTGGAAGTTCCTGAGAACAAACG 475 Query 511 TAGGCTATCTATCTACAAAGGTATTGTGATGTCTAGACAAAATGCAGGCATCCACACTAC 570 ||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| Sbjct 476 TAGGCTATCTATCTACAAAGGCATAGTGATGTCGAGACAAAATGCAGGCATACACACTAC 535 Query 571 TATCCGTATCCGGAGGATTATTGCAGGCATTGGTGTTGAAATCGTCTTTCCCATATACTC 630 || ||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| Sbjct 536 CATTCGTATTCGGAGAATTATTGCGGGTATTGGTGTTGAAATCGTGTTTCCCATATACTC 595 Query 631 TCCCAACAT-AAAGGAGATAAAAGTGGTAAGTCACAGGAAAGTGAGAAGAGCAAGACTTT 689 ||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 596 TCCCAACATCAAAG-AGATAAAAGTGGTGAGTCACAGAAAAGTGAGAAGAGCAAGGCTTT 654 Query 690 ACTATCTGAGGGACAAACTTCCTCGTCTCTCAACTTTTAAATGA 733 |||||||||| ||||| |||||||||||||| ||||| || ||| Sbjct 655 ACTATCTGAGAGACAAGCTTCCTCGTCTCTCCACTTTCAAGTGA 698 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5