BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47220.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1 680 0.0
Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1 315 5e-85
Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1 106 3e-22
> Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1
Length=830
Score = 680 bits (368), Expect = 0.0
Identities = 492/546 (90%), Gaps = 31/546 (6%)
Strand=Plus/Plus
Query 411 GAAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGATACGTGA 470
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 305 GAAGCATTACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGA 364
Query 471 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 424
Query 531 TTTAGCTTACGATATAGCTGCTTTTAGGATGCGTGGTTCCCGCGCTTTATTGAATTTTCC 590
|||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 425 TTTAGCTTACGATAGAGCAGCTTTTAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCC 484
Query 591 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTtc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTTC 544
Query 651 gtcgtcgtcgtcgtcgtc--c-tc-t-t-ctacgtcgtcgtcTGAAAACGGGAAGTTGAA 704
|||||||| |||||||| | || | | || |||| |||||||||||||||||||||||
Sbjct 545 TTCGTCGTCTTCGTCGTCTTCGTCGTCTTCTTCGTCTTCGTCTGAAAACGGGAAGTTGAA 604
Query 705 ACGAAGGAGAAAAGCAGAGAATCTGACGTCGGAGGTGGTGCAGGTGAAGTGTGAGGTTGG 764
||| ||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 605 ACGGAGGAGAAAAGCAGAGAATCTGACGTCGGAGGTG----A----A-GTGTGAGGTTGG 655
Query 765 TGATGAGACACGTGTTGATGAGTTATTGGTTTCATAAGTTT-GATCTTGTGTGTTTTGTA 823
||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 656 TGAAGAGACACGTGTTGATGAGTTATTGGTTTCATAAGTTTTGATTTTGTGTGTTTTGTA 715
Query 824 GTTGAATAGTTTTGCTATAAATGTTGAGGCACCAAGTAAAAGTGTT-CCCGTGATGTAAA 882
|||||||||||||||||||||||||||||| | ||||| ||||| ||| |||||||||
Sbjct 716 GTTGAATAGTTTTGCTATAAATGTTGAGGCG--A-GTAAA-GTGTTTCCCCTGATGTAAA 771
Query 883 TTAGT-TACTAA-A-CAGAGCCATATATCTTCAATCCATAAACAAAATAGACACTTTAAT 939
||| | || ||| | || | | | | | || || |||| | ||||||||||||||||
Sbjct 772 TTACTATA-TAATATCAAA-C-AGAGC-CATC--TCTATAA-CTAAATAGACACTTTAAT 824
Query 940 AAAGCC 945
||||||
Sbjct 825 AAAGCC 830
Score = 398 bits (215), Expect = 5e-110
Identities = 290/323 (90%), Gaps = 17/323 (5%)
Strand=Plus/Plus
Query 56 TAGTTTCTCTGAAAATGTACGGACAGTGCAATATAGAATCCGACTACGCTTTGTTGGAGT 115
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TAGTTTCTCTGAAAATGTACGGACAGTGCGATATAGAATCCGACTACGCTTTGTTGGAGT 60
Query 116 CGATAACACGTCACTTGCTAGGAGGAGGAGGAGAGAACGAGCTGCGACTCAATGAGTCAA 175
|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 61 CGATAACACGTCACTTGCTAGGAGGAGGAG-AGA-A-CGAGCTGCGACTCAATGAGTCGA 117
Query 176 CACCGAGTTCGTGTTTCACAGAGAGTTGGGGAGGTTTGCCATTGAAAGAGAATGATTCAG 235
|||||||||||||||||||||| || | ||| |||||||||||||||||||
Sbjct 118 CACCGAGTTCGTGTTTCACAGA---TT-------T--GCCGTTGAAAGAGAATGATTCAG 165
Query 236 AGGACATGTTGGTGTACGGACTCCTCAAAGATGCCTTCCATTTTGACACGTCATCATCGG 295
|||| ||||| || ||||||||| ||||||| |||||||||| ||||||||||||||| |
Sbjct 166 AGGATATGTTAGTCTACGGACTCATCAAAGACGCCTTCCATTGTGACACGTCATCATCAG 225
Query 296 ACTTGAGCTGTCTTTTTGATTTTCCGGCGGTTAAAGTCGAGCCAACTGAGAACTTT-ACG 354
||||||||||||||||||||||||||||||||||||| ||||| || |||| |||| | |
Sbjct 226 ACTTGAGCTGTCTTTTTGATTTTCCGGCGGTTAAAGTTGAGCCGACGGAGACCTTTGA-G 284
Query 355 GCGATGGAGGAGAAACCAAAGAA 377
| | |||||||||||||||||||
Sbjct 285 GTGGTGGAGGAGAAACCAAAGAA 307
> Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1
Length=998
Score = 315 bits (170), Expect = 5e-85
Identities = 217/240 (90%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 412 AAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGA-TACGTGA 470
|||||||| ||||||||||| || || |||||||||||||| |||||||||| || | ||
Sbjct 504 AAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTA-GAGA 562
Query 471 TCCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGC 530
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 563 TCCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAGGACGCGGC 622
Query 531 TTTAGCTTACGATATAGCTGCTTTTAGGATGCGTGGTTCCCGCGCTTTATTGAATTTTCC 590
|| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 623 GTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCC 682
Query 591 GTTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTtc 650
|||||| |||||||| || ||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 683 GTTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGGATCAAGTCCAAGAGATCTTCTTC 742
> Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1
Length=1170
Score = 106 bits (57), Expect = 3e-22
Identities = 131/165 (79%), Gaps = 12/165 (7%)
Strand=Plus/Plus
Query 411 GAAGCATTACAGAGGAGTGAGGCAGAGACCGTGGGGGAAATTCGCGGCGGAGATACGTGA 470
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 560 GAAGCATTACAGAGGAGTGAGACAAAGACCGTGGGGGAAATTCGCGGCGGAGATTCGTGA 619
Query 471 TCCGGCGAAGAAT-G-G-AGCTAGGGTTTGG-TTAGGGACGTTTGAGACGGCGGAA-GAT 525
|| |||| || | | | | | |||||| || ||||||||||| || ||| | ||
Sbjct 620 -CC--CGAATAAACGCGGATCCCGCGTTTGGCTT-GGGACGTTTGATACAGCG-ATTGAA 674
Query 526 GCGGCTTTAGCTTACGAT-ATAGCTGCTTTTAGGATGCGTGGTTC 569
||||| |||||| ||| | ||| || |||||| | || |||||
Sbjct 675 GCGGCAAGAGCTTATGATGA-AGCAGCGTTTAGGCTTCGAGGTTC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5