BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47240.1 Length=1492 Score E Sequences producing significant alignments: (Bits) Value Ahg915315 jgi|Araly1|915315|Al_scaffold_0008_66 1720 0.0 > Ahg915315 jgi|Araly1|915315|Al_scaffold_0008_66 Length=1095 Score = 1720 bits (931), Expect = 0.0 Identities = 1053/1109 (95%), Gaps = 19/1109 (2%) Strand=Plus/Plus Query 206 ATGGATTCTGTTTCTCTTTCTGAGGTTACTGTC-ATTAAAGGAACAACACATTTGGGTTT 264 ||||||||||||||||||||||||||||||| | ||| | ||| ||||||||||||||| Sbjct 1 ATGGATTCTGTTTCTCTTTCTGAGGTTACTG-CTATT--A-GAAGAACACATTTGGGTTT 56 Query 265 TATGCACAGTTTCAGACAGCCATTTTGTGGTG-TCAAAATATCTCCAAAGTTCTATTTAT 323 |||||||||||||||||| ||||||| ||||| || |||| |||||||||||| || | Sbjct 57 TATGCACAGTTTCAGACAACCATTTTCTGGTGTTC-CAATACCTCCAAAGTTCTGTTCCT 115 Query 324 CCAAAGTTGATGGACCAAAGGCAATATCT-TCGAGCAGCAACACAAAGAGTCAATTTGTT 382 |||||||||||||||||||||||| || | || | ||||| |||||||| |||| |||| Sbjct 116 CCAAAGTTGATGGACCAAAGGCAACAT-TGTC-A--AGCAATACAAAGAGCCAATCTGTT 171 Query 383 TATGGAGGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTATAAGATGAATGGAGTAAAC 442 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 172 TAT---GGAGGAAGCATAGCTGCAACTTCAGATTCAGGTTACAAGATGAATGGAGTAAAC 228 Query 443 CTAAAAAGCAGAACATTGATGAGTTCTGCAGTTAAAGAAAGATCATTACTTGATGCTTAT 502 |||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 229 CTAAAAAGCAGAACATTGATCAGTTCT---GTTAAAGAAAGATTATTACTTGATGCTTAT 285 Query 503 GATGATGAGTATGGTGGAGTAATAGTAGATCATGGAAAATTACCATCAAACCCTTATGCT 562 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 286 GATGATGAGTATGGTGGAGTAATAGTTGATCATGGAAAATTACCATCAAACCCTTACGCT 345 Query 563 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346 TTCGCTTCTATGCTTCGAGCTTCTCTATCCGATTGGAGAAGAAAGGGAAAGAAAGGAGTT 405 Query 623 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TGGTTAAAGTTACCTGTGGAACAATCAGAATTAGTCCCAATAGCTATAAAGGAAGGTTTT 465 Query 683 GAGTATCATCATGCAGAGAAAGGATATGTAATGTTAACATATTGGATACCAGAGGAGGAA 742 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 466 GAGTATCATCATGCAGAGAAACGATATGTGATGTTAACATATTGGATACCAGAGGAGGAA 525 Query 743 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTATTAAAT 802 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 526 CCTAGTATGCTTCCTGCAAATGCTTCACATCAAGTTGGTGTTGGAGGTTTTGTACTAAAT 585 Query 803 CAACATAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCTTCGATTACTGGTCTA 862 |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 586 GAACAGAAAGAGGTGCTTGTGGTACAAGAAAAGTATTGTGCTCCATCGATTACAGGTCTA 645 Query 863 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 TGGAAGTTACCAACAGGGTTTATTAATGAATCTGAAGAGATTTTCTCTGGTGCTGTAAGA 705 Query 923 GAAGTCAAGGAAGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 982 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 GAAGTCAAGGAGGAAACTGGGGTAGATACAGAGTTCTCAGAGGTTATAGCTTTCAGACAT 765 Query 983 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTC 1042 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 GCTCACAACGTTGCATTTGAGAAATCTGATCTGTTCTTCATCTGTATGTTGAGACCACTT 825 Query 1043 TCTGATAAGATAATCATCGATGCTCTTGAGATCAAAGCCGCAAAGTGGATGCCATTGGCT 1102 |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 826 TCTGATAAGATAATCATCGATGGTCTTGAGATCAAAGCCGCAAAGTGGATGCCTTTGGCG 885 Query 1103 GAATTTGTGGAGCAACCGATGATAAGAGGAGACAAAATGTTTAAAAGAGTGATTGAAATA 1162 |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 886 GAATTTGTGGAGCAACCGATGATAAGAGAAGACAAAATGTTTAAGAGAGTGATTGAAATC 945 Query 1163 TGCGAGGCGAGATTAAGCCATCGGTACTGCGGTCTTTCTCCTCATCGACTTGTCTCTACT 1222 |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 946 TGCGAGGCGAGACTAAGGCATCGGTACTGCGGTCTTTCTCCTCATAGACTTGTCTCTACT 1005 Query 1223 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 TTTGATGGCAAACCTTCTTCTCTCTATTACAACGTTGTTGATGATGATCATGATCCTTCC 1065 Query 1283 CACTCCAATTGTAGCACTGAGT-TTTATA 1310 ||||||||||||| |||||| | |||||| Sbjct 1066 CACTCCAATTGTAACACTGATTATTTATA 1094 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55840299170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5