BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47430.1 Length=3300 Score E Sequences producing significant alignments: (Bits) Value Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1 4383 0.0 Ahg946493 jgi|Araly1|946493|scaffold_702722.1 1491 0.0 > Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1 Length=3146 Score = 4383 bits (2373), Expect = 0.0 Identities = 2796/2992 (93%), Gaps = 61/2992 (2%) Strand=Plus/Plus Query 334 ATCTGCAGGAACTTTTCCAGGATTCGTTGATTTGGATTGATTTTGCTACACGCGTGGA-G 392 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | Sbjct 191 ATCTGCAGGAACTTGTCCAGGATTCGTAGATTTGGATTGATTTTGCTACACGCGTGGAGG 250 Query 393 TTTCCTTCTGTGAAGTCGAATCAGCGAAATACAAATTTTCAATGGCAATTTATTACAAGT 452 ||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 251 TTT-CTTCTGTGAAGTCGAATCAGCGAAGTAAAAATTTTCAATGGCAATTTATTACAAGT 309 Query 453 TTAAGAGTGCAAGGGATTATGATACCATTGCCATGGATGGTCCTTTTATATCCGTCGGTA 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TTAAGAGTGCAAGGGATTATGATACCATTGCCATGGATGGTCCTTTTATATCCGTCGGTA 369 Query 513 TTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCACTGGTAAAGACCTTGATATTG 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 TTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCACTGGTAAAGACCTTGATATTG 429 Query 573 TCGTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATGAAGCAATGTTAATCCCAAAGA 632 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 430 TCGTCTCCAATGCCCAAACTAATGAAGAGTATCTGGATGAAGCAATGTTAATCCCAAAGA 489 Query 633 ATACATCTGTCCTTATTCGTCGGGTTCCTGGACGTCCTCGCATCACAGTTATTACCACAC 692 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| Sbjct 490 ATACATCTGTCCTTATTCGTCGAGTTCCAGGACGCCCTCGCATCACAGTTATCACCACAC 549 Query 693 AAGAGCCTAGAATCCAGAATAAAGTGGAAGACGTTCAGGCTGAAACCACCAATTTTCCTG 752 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 550 CAGAGCCTAGAATCGAGAATAAAGTGGAAAACGTTCAGGCTGAAACCACCAATTTTCCTG 609 Query 753 TTGCTGATCCATCTGCTGCTGAATTTCCTGAAGATGAGTATGACGAGTTTGGGACTGATC 812 || | ||||||||||| || ||| |||||||||||| | |||||||||||||||||| Sbjct 610 TTACCGATCCATCTGCCACTAAATATCCTGAAGATGATTGGGACGAGTTTGGGACTGAT- 668 Query 813 TT-TATTCCATTCCTGATACCCAAGATGCCCAGCATATTATT---CCACGTCCTCATCTT 868 || ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct 669 TTATATTCCATTCCTGATGCCCAAGATGCCCAGCATATTATTATTCCACGTCCTGATCTT 728 Query 869 GCAACC-GCAGACGACAAAGTAGATGAAGAAAGCAAAATTCAGGCGCTGATTGACACTCC 927 ||| || |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 729 GCA-CCAGCAGACGAGAAAGTAGATGAAGAAAGCAAAATCCAGGCACTGATTGACACTCC 787 Query 928 AGCACTTGACTGGCAACAACGACAAGGTCAAGATACTTTTGGAGCTGGTAGAGGTTATGG 987 ||||||||||||||||| ||||||||| |||||||| ||| ||||| |||||||| || Sbjct 788 AGCACTTGACTGGCAAC---GACAAGGTCCAGATACTTATGGGGCTGGGAGAGGTTACGG 844 Query 988 GAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTTTGGAATGGAAAGGAAAACGCCACC 1047 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 AAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTTTGGAATGGAAAGGAAAACGCCACC 904 Query 1048 TCCAGGTTATGTGTGCCATCGTTGCAATATCCCTGGACATTTTATTCAGCATTGCCCCAC 1107 |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 905 TCCAGGATATGTGTGCCATCGATGCAATGTCCCTGGACATTTTATTCAGCATTGCCCCAC 964 Query 1108 AAATGGAGACCCTAACTATGATGTTAAGAGAGTTAAGCCACCTACTGGTATCCCCAAGTC 1167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 AAATGGAGACCCTAACTATGATGTTAAGAGAGTTAAGCCACCTACTGGTATCCCCAAGTC 1024 Query 1168 CATGTTGATGGCGACCCCAGATGGTTCTTATTCCTTGCCAAGTGGCGCAGTTGCAGTTCT 1227 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 CATGTTGATGGCGACCCCTGATGGTTCTTATTCCTTGCCAAGTGGCGCAGTTGCAGTTCT 1084 Query 1228 GAAACCAAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCATCAACAACACGTTC 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 GAAACCAAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCATCAACAACACGTTC 1144 Query 1288 TGTAGGAGAACTTCCACCTGAGCTAAAATGCCCATTATGCAAAGAAGTGATGAAAGATGC 1347 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1145 TGTAGGAGAACTTCCGCCTGAGCTAAAATGCCCATTATGCAAAGAAGTAATGAAAGATGC 1204 Query 1348 TGCGCTTACAAGCAAATGTTGTTACAAGAGCTTCTGTGACAAGTGTATCAGAGATCACAT 1407 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1205 TGCGCTTACAAGCAAATGTTGTTACAAAAGCTTCTGTGACAAGTGTATCAGAGATCACAT 1264 Query 1408 TATTTCAAAGTCAATGTGTGTTTGTGGAAGATCAGATGTACTTGCTGACGACCTTCTACC 1467 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1265 TATTTCAAAGTCAATGTGTGTTTGTGGAAGACCAGATGTACTTGCTGACGATCTTCTACC 1324 Query 1468 AAACAAGACCCTCAGGGATACCATAAACCGTATTTTGGAAGCTGGAAACGATAGCACTGA 1527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 AAACAAGACCCTCAGGGATACCATAAACCGTATTTTGGAAGCTGGAAACGATAGCACTGA 1384 Query 1528 GAATGTGGGCAGCGTTGGCCATATCCCAGATTTGGAGTCTGCACGCTGTCCACCTCCCAA 1587 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 GAACGCGGGCAGCGTTGGCCATATCCCAGATTTGGAGTCTGCACGCTGTCCACCTCCCAA 1444 Query 1588 GGCTCTATCTCCTACTACATCTGTTGCATCTAAAGGCGAGAAGAAACCAGTACTTAGTAA 1647 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1445 GGCTCTATCTCCTACTACATCTGTTGCATCTAAAGGCGAGAAGAAACCAGTCCTTAGTAA 1504 Query 1648 CAATAATGATGCTTCAACTTTAAAGGCGCCAATGGAAGTTGCAGAGATCACAAGTGCCCC 1707 |||||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||| Sbjct 1505 CAATAATGATGCTTCAACCTTAAAGCCGCCAATGTATGTTGCAGAGATCACAAGTGCCCC 1564 Query 1708 TCGTGCATCTGCAGAAGTGAATGTAG-AAAAGCCAGTTGATGCATGTGAAAGCACTCAAG 1766 ||| |||||||||||||| ||||| | |||| |||||||||||||||||||||||||||| Sbjct 1565 TCGGGCATCTGCAGAAGTTAATGTGGGAAAA-CCAGTTGATGCATGTGAAAGCACTCAAG 1623 Query 1767 GGTCCGTGATTGTGAAAGAAGCAACAGTGTCAAAGTTGAATACGCAAGCCCCCAAGGAAG 1826 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1624 GGTCCGTGATTGTGAAAGAAGCAACAGTTTCAAAGTTGAATACGCAAGCCCCCAAGGAAG 1683 Query 1827 AAATGCAGCAGCAGGTTGCTGCTGGAGAGCCAGgaaaaaagaagaaaaagaaaCCAAGAG 1886 || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1684 AAGTGCAGCAGCAGGTTGCTGCTGGAGAGCCAGGAAAAAAGAAGAAAAAAAAAACAAGAG 1743 Query 1887 TGCCTGGGAATG-A--CATGCAATGGAATCCTGTGCCAGATCTAGCAGGCCCTGACTATA 1943 |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1744 TGCCTGGGAATGCAGACATGCAATGGAATCCTGTGCCAGATCTAGCAGGCACTGACTATA 1803 Query 1944 TGATGCAAATGGGACCAGGTCCGCAGTACTTCAACGGCATGCAACCTGGCTTCAATGGCG 2003 ||||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| Sbjct 1804 TGATGCAAATGGGACCAGGTCCGCAGTACTTCAACGGAATGCAGCCCGGTTTCAACGGCG 1863 Query 2004 TACAACCAGGCTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTCAATG 2063 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1864 TCCAACCAGGCTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTTAATG 1923 Query 2064 GATTTGGAGGCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACCCAA 2123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1924 GATTTGGAGGCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACGCAA 1983 Query 2124 TGGACATGGGATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATGGCACAAG 2183 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1984 TGGACATGGGATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATTGCACAAG 2043 Query 2184 GATTTGGGTTCCCTAATATACCACCACCCCATAGGGACCTAGCTGAAATGGGAAACCGAA 2243 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2044 GATTTGGGTTCCCTAATATACCACCACCCCATAGGGACCTAGCGGAAATGGGAAACCGAA 2103 Query 2244 TGAATCTCCAACGTGCTATGATGGGCAGAGATGAAGCCGAAGCCCGAAACGCTGAGATGT 2303 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 2104 TGAATCTCCAACGTGCTATGATGGGCAGAGATGAAGCCGAAGCTCGAAATGCTGAGATTT 2163 Query 2304 TAAGAAAACGTGAAAACGAGAGACGACCTGAAGGTGGGAAGATGTTTAGGGATGGAGAGA 2363 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2164 TAAGAAAACGCGAAAACGAGAGACGACCTGAAGGTGGGAAGATGTTTAGGGATGGAGAGA 2223 Query 2364 ATAGCAGAATGATGATGAACAACGGTACTTCAGCCTCTGCATCATCCATCAACCCTAATA 2423 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 2224 ATAGCAGAATGATGATGAACAACGGAACTTCAGCCTCGGCATCATCCATCAACCCTAATA 2283 Query 2424 AATCTAGACAAGCACCTCCACCACCAA-TCCACGATTACGATCGCCGGAGACGACCGGAG 2482 ||||||||||||| ||||| ||||| | || |||||||||||||||| |||||||||||| Sbjct 2284 AATCTAGACAAGCCCCTCCTCCACCGACTC-ACGATTACGATCGCCGCAGACGACCGGAG 2342 Query 2483 AAGAGACTATCCCCAGAGCATCCGCCTAC-GCGTAAAAACATTTCCCCGTCTCGCGACTC 2541 | || ||||||||||||||||||| || |||||||| ||| || ||||| ||||| || Sbjct 2343 A-GAT--TATCCCCAGAGCATCCGCC-ACCGCGTAAAATCATCTCTCCGTCACGCGATTC 2398 Query 2542 CAAGAGAAAATCCGAGCGTTATCCTGATGAACGAGATCGGCAACGCGACCGTGAGAGGTC 2601 |||||||||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| Sbjct 2399 CAAGAGAAAATCTGAGCGTTATCCTGACGAACGAGATCGTCACCGCGACCGTGAAAGGTC 2458 Query 2602 ACGTCACCAAGA-CGTAGATCGTGAACACGACCGTACTCGCGACCGTCGCGATGAAGACA 2660 ||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 2459 TCGTCACCAAGATCTT-GATCGTGAACACGACCGCACTCGCGACCGTCGCGATGAAGATA 2517 Query 2661 GAAGCCGAGATCATCGCCACCACCGTGGTGAAACCGAACGCAGCCAACATCA-C-C-ACC 2717 |||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| | | ||| Sbjct 2518 GAAGCCGAGAACATCGTCACCACCGTGGTGAATCCGAACGCAACCAACATCATCACCACC 2577 Query 2718 GCAAGAGATCGGAACCGCCTTCATCGGAGCCACCAGTCCCTGCT--A-CTAAAGCAGAGA 2774 | |||||||||||||| || || ||||||||||||| | |||| | |||||||||||| Sbjct 2578 GTAAGAGATCGGAACCTCCGTCGTCGGAGCCACCAGGCACTGCCGGAACTAAAGCAGAGA 2637 Query 2775 TCGAGAATAATCTTAAGTCTAGCGTATTCGCTCGGATAAGTTTTCCGGAGGAAGAAACAT 2834 |||| |||| || ||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 2638 TCGATAATAGTCACAAGTCAAGCGTATTCGCTCGGATAAGTTTCCCGGAGGAAGAAACAT 2697 Query 2835 CTTCTGGTAAACGAAGAAAGGTGCCTTCCTCTTCTTCTACTTCTGTTACGGATCCATCTG 2894 | |||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||| Sbjct 2698 CGTCTGGTAAACGAAGAAAGGTTTCTTCGTCTTCTTCCACTTCTGTGACGGATCCATCTG 2757 Query 2895 CTTCCGCCTCTGCCGCAGCCGCCGTGGGAACATCAGTTCACCGACACAGTAGTCGGAAGG 2954 || | | |||| ||||||||||| ||||||| |||||||||||||||| Sbjct 2758 CTAC-G-----GCCG---------TGGGAACATCAATTCACCGTCACAGTAGTCGGAAGG 2802 Query 2955 AAATAGAAGTAGCAGATTATGAATCTAGTGATGAAGATAGGCATTTCAAGAGGAAG---C 3011 ||||||||||||||||||||||||| || || |||||||||||||||||||||||| | Sbjct 2803 AAATAGAAGTAGCAGATTATGAATCGAGCGACGAAGATAGGCATTTCAAGAGGAAGAAGC 2862 Query 3012 CGTCAAGGTACGCGCGATCACCACCGGTGGTGGTTAGTGATGTGAGTGAAGATAAACTCC 3071 | |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 2863 CATCAAGGTACGAGCGATCACCACCGGCGGTGGTTAGTGATGTGAGTGAAGATAAACACC 2922 Query 3072 GATACTCAAAACGTGGAAAGGGGGAGAGATCTCGAGCTTGACATGGATTTTCAAACATGt 3131 ||||||| |||||||||||||| |||||||||||||||||| |||||||| | | Sbjct 2923 GATACTCCAAACGTGGAAAGGGAGAGAGATCTCGAGCTTGATTTGGATTTT------T-T 2975 Query 3132 ttttttttttttttGTATAATCAAAAACAGA-GAATGAGAATCTTCTTGTTTTGCTGTAA 3190 | ||||||||||||||||||| ||||||||| || |||||||||||||||||| |||||| Sbjct 2976 TGTTTTTTTTTTTTGTATAATGAAAAACAGATGA-TGAGAATCTTCTTGTTTTACTGTAA 3034 Query 3191 CGAACAAAG-AGAGAGAGTTCTTTTGTCATCGAATTCttttttaatttttGTAGTGGAAT 3249 ||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 3035 CGAACAAAGCAGAGAGAGCTCTTTTGTCATCGAATGCTTTTTTAATTTTTGTAGTGGAAT 3094 Query 3250 TCGATTTCGTAACTACTTTATTCTTAA-TCTATGAGACCAGCGAATTTACAG 3300 ||||||||||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct 3095 TCGATTTCGTAACTACTTTATTCTTAAATCTTTGAGACCAGTGAATTTACAG 3146 Score = 193 bits (104), Expect = 9e-48 Identities = 142/159 (89%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 29 TCTTGTGTCCAAACCCTAGATTTCAAGATCGATCTATCTTCTTTCTCGTGAAGACACCGC 88 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TCTGGTGTCCAAACCCTAGATTTCGAGATCGATCTATCTTCTTTCTCGTGAAGACACCG- 59 Query 89 TCTCTACTCGATTCCTATGATTACTCTCTAGATCCTTTTCAATTTCCCCCCGAAAGGT-T 147 |||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||| | Sbjct 60 -CTCTGCTCGATTCGTATGATTACTCTCTAGATCCTTTTCAATTTCCCCCGGAA-GGTCT 117 Query 148 TCTCGATTT-TG-ATCCCCCAAATCGGAGCTTGGAGCTA 184 || | ||| | | |||| ||||||||||||||||||| Sbjct 118 TCCCT-TTTCTACAACCCC-AAATCGGAGCTTGGAGCTA 154 > Ahg946493 jgi|Araly1|946493|scaffold_702722.1 Length=2563 Score = 1491 bits (807), Expect = 0.0 Identities = 1700/2113 (80%), Gaps = 133/2113 (6%) Strand=Plus/Plus Query 433 AATGGCAATTTATTACAAGTTTAAGAGTGCAAGGGATTATGATACCAT-TGCCATGGATG 491 |||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| Sbjct 20 AATGGCAATTTATTACAAGTTTAAGAGTGCGAGGGATTATGATACCATCT-CCATGGATG 78 Query 492 GTCCTTTTATATCCGTCGGTATTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCA 551 ||||||||||| | || ||| |||||||||| ||||||| |||||||||||||||||| | Sbjct 79 GTCCTTTTATAACAGTTGGTTTTCTCAAAGAAAAAATTTACGAAACTAAGCATTTGGGAA 138 Query 552 CTGGTAAAGACCTTGATATTGTCGTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATG 611 ||||||||||||||| |||||| |||| |||||||||||||| ||||| |||||||||| Sbjct 139 GTGGTAAAGACCTTGACATTGTCATCTCTAATGCCCAAACTAATGAAGAATATCTGGATG 198 Query 612 AAGCAATGTTAAT-CCCAAAGAATACATCTGTCCTTATTCGTCGGGTTCCTGGACGTCCT 670 ||||||||||||| |||||| ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 199 AAGCAATGTTAATTCCCAAA-AATACTTCTGTTCTAATTCGCCGGGTCCCTGGACGCCCT 257 Query 671 CGCATCACAGTTATTACCACACAAGAGCCTAGAATCCAGAATAAAGTGGAAGACGTTCAG 730 ||||||| | ||||||||| || |||||| ||| | || ||||||||||| ||||||| Sbjct 258 CGCATCAGAATTATTACCATACCAGAGCCGAGAGTTGAGGATAAAGTGGAAAACGTTCAA 317 Query 731 GCTGAAACC--ACCAATTTTCCTGTTGCTGATCCATCTGCTGCTGAATTTCCTGAAGATG 788 ||||| || | |||| || | ||||||| ||||||||| |||| | ||| || Sbjct 318 GCTGA--CCTGAACAATGTTATTACTGCTGATGCATCTGCTGTTGAAGA-C--GAA--TG 370 Query 789 AGTATGACGAGTTTGGGACTGATCTT-TATTCCATTCCTGATACCCAAG-ATGCCCAG-C 845 | |||| | ||||||| |||| || ||||| ||||||||| ||| || | | ||| | Sbjct 371 GG-ATGA-G--TTTGGGAATGAT-TTGTATTCAATTCCTGATGCCCCAGCA-GTCCATTC 424 Query 846 ATATTATTCC-ACGTCCTCATCTTGCAACCG-CAGACGACAAAGTAGATGAAGAAAGCAA 903 || || || | ||| | ||| |||| || | || || |||||||||||||||| ||| Sbjct 425 -TAATAA-CCTATGTCATGATCCTGCA-CCAACCGATGATAAAGTAGATGAAGAAACCAA 481 Query 904 AATTCAGGCGCTGATTGACACTCCAGCACTTGACTGGCAACAACGACAAGGT-CAAGATA 962 ||| |||| | |||||||| |||||||| |||||||| |||| | | ||| | ||| Sbjct 482 AATAAAGGCATTAATTGACACCCCAGCACTAGACTGGCAGCAAC-A-A-GGTGCG-GATG 537 Query 963 CTTTTGGAGCTGGTAGAGGTTATGGGAGGGGTATGCCTGGAAGGATGAATGGACGTGGTT 1022 |||||| | || ||||||||||||||||||||| ||||||||||| ||| || |||| Sbjct 538 GTTTTGGCCCGGGCAGAGGTTATGGGAGGGGTATGGCTGGAAGGATGGGTGGCCGCGGTT 597 Query 1023 TTGGAATGGAAAGGAAAACGCCACCTCCAGGTTATGTGTGCCATCGTTGCAATATCCCTG 1082 |||||||||||||||||||||| || ||||| ||||| |||||||| |||||| | ||| Sbjct 598 TTGGAATGGAAAGGAAAACGCCGCCACCAGGCTATGTTTGCCATCGGTGCAATGTTTCTG 657 Query 1083 GACATTTTATTCAGCATTGCCCCACAAATGG-AGACCCTAACTATGATGTTAAGAGAGTT 1141 ||||||||||||| || ||| ||||||| || | | ||||| | ||||||||| |||||| Sbjct 658 GACATTTTATTCAACACTGCTCCACAAACGGTA-ATCCTAATTTTGATGTTAAAAGAGTT 716 Query 1142 AAGCCACCTACTGGTATCCCCAAGTCCATGTTGATGGCGACCCCAGATGGTTCTTATTCC 1201 || ||||||||||||||||||||||| ||| |||||||||||||| |||| ||||| ||| Sbjct 717 AAACCACCTACTGGTATCCCCAAGTCAATGCTGATGGCGACCCCAAATGGCTCTTACTCC 776 Query 1202 TTGCCAAGTGGCGCAGTTGCAGTTCTGAAACCAAATGAGGATGCTTTTGAGAAGGAAATG 1261 ||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||| Sbjct 777 TTGCCAAGTGGCGCAGTAGCAGTTTTAAAACCAAATGAGGATGCGTTTGAGAAGGAAATG 836 Query 1262 GAGGGATTGCCATCAACAACACGTTCTGTAGGAGAACTTCCACCTGAGCTAAAATGCCCA 1321 ||||||||| ||||||||||||| || || || ||| |||| ||||| ||||||||||| Sbjct 837 GAGGGATTGACATCAACAACACGATCAGTCGGGGAATTTCCTCCTGAATTAAAATGCCCA 896 Query 1322 TTATGCAAAGAAGTGATGAAAGATGCTGCGCTTACAAGCAAATGTTGT-TACAAGAGCTT 1380 || |||||||||||||||| ||||||||| || |||||||||| ||| | |||||||| Sbjct 897 TTGTGCAAAGAAGTGATGAGAGATGCTGCACTGGCAAGCAAATGCTGTCT-CAAGAGCTA 955 Query 1381 CTGTGACAAGTGTATCAGAGATCACATTATTTCAAAGTCAATGTGTGTTTGTGGAAG-AT 1439 ||||||||||||||| ||||||||||| ||| | ||||||||||||| |||| | | | Sbjct 956 CTGTGACAAGTGTATTAGAGATCACATCATTGCCAAGTCAATGTGTGCTTGTACA-GCAA 1014 Query 1440 CAGATGTACTTGCTGACGACCTTCTACCAAACAAGACCCTCAGGGATACCATAAACCGTA 1499 | ||||| || ||||| || || || |||||||||||||| |||||||| |||||||||| Sbjct 1015 CTGATGTCCTAGCTGATGATCTGCTTCCAAACAAGACCCTAAGGGATACTATAAACCGTA 1074 Query 1500 TTTTGGAAG-CTGGAAAC-GATAGCACTGAGAATG-TGGGCAGCGT-TGGCCATATCCCA 1555 | ||||| | |||| ||| | ||| ||||||| | ||| |||| | || | | ||| | Sbjct 1075 TCTTGGA-GTCTGGTAACAG-TAGTGCTGAGAACGCTGG-CAGCATGTGTCAAG-TCCAA 1130 Query 1556 GATTTGGAGTCTGCACGCTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGTTGCA 1615 ||| ||||||||||||| |||||||||||||||| | ||||||||||||| |||| |||| Sbjct 1131 GATATGGAGTCTGCACGGTGTCCACCTCCCAAGGTTTTATCTCCTACTACGTCTGCTGCA 1190 Query 1616 TCTA-AAGGCGAGAAGAAACCAG-TACTTAGTAACAATAATGATGCTT-CAACTTTAAAG 1672 ||| ||| ||| |||||||||| | || |||||||| ||||| | || ||||| ||||| Sbjct 1191 TCTGGAAG-CGAAAAGAAACCAGCTCCT-AGTAACAACAATGA-GATTTCAACTCTAAAG 1247 Query 1673 GCGCCAATGGAAGTTGCAG-AGATCACAAGTGCCCCTCGTGCATCTGCAGAAGT-G--AA 1728 || |||| ||| | | | ||||||||||| | ||||| || ||||||||| | | || Sbjct 1248 CCGTCAATAGAAATA-CTGGAGATCACAAGTACTCCTCGGGCGTCTGCAGAAATAGTTAA 1306 Query 1729 TGTAGAAAAGCCAGTTGATGCATGTGAAAGCACTCAAGGGTCCGTGAT-TGTGAAAG-AA 1786 || ||||||||||||||||||| ||||| || |||||| ||| | | || | ||| || Sbjct 1307 AGTGGAAAAGCCAGTTGATGCATCTGAAAACATTCAAGGATCC-TCAAATG-GCAAGGAA 1364 Query 1787 GCAACAGTGTCA-AAGTTGAATACGCAAGCCCCCAAGGAAGAAATGCAGCAGCAGGTTGC 1845 ||| |||| ||| || | |||| |||| ||||||||||||||||||| |||||||||||| Sbjct 1365 GCAGCAGTTTCACAACT-GAATGCGCAGGCCCCCAAGGAAGAAATGCCGCAGCAGGTTGC 1423 Query 1846 TGCTGGAGAGCCAGgaaaaaagaagaaaaagaaaCCAAGAGTGCCTGGGAATGACATGCA 1905 | |||| |||| |||||||| |||||| |||||||| | | || | |||| || Sbjct 1424 TTCTGGGGAGCAAGGAAAAAGGAAGAAGAAGAAACC-----T-C--GG-A-TGAC-TG-- 1470 Query 1906 ATGGAATCCTGTGCCAGATCTAGCAGGCCCTGACTATATGATGCAAATGGGACCAGGTCC 1965 | || || | | |||||||||||||||||||||||||| ||||| |||||||| Sbjct 1471 --G-AA-CC-G----A--TCTAGCAGGCCCTGACTATATGATGCCCATGGGTCCAGGTCC 1519 Query 1966 -G-----CAGTACTTCAACGGCATGCAACCTGGCTTCAATGGCGTACAACCA-GGCTTCA 2018 | ||||||||||| || ||||||| |||||||| ||||| |||| | || |||| Sbjct 1520 CGGTAATCAGTACTTCAATGGTTTGCAACCCGGCTTCAACGGCGTCCAAC-ATGGGTTCA 1578 Query 2019 ACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTCAATGGATTTGGAGGCCCGT 2078 | || ||||||||||| |||||||||||||| | ||| |||||||| ||| |||||| | Sbjct 1579 ATGGCGTTCAACCTGGGTTCAATGGCTTTCATCATGGTTTCAATGGGTTTCCAGGCCCTT 1638 Query 2079 TTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACCCAATGGACATGG-GATTT 2137 |||| || || |||||||| ||| | || || |||||| ||| ||||||||| | ||| Sbjct 1639 TTCCTGGTGCGATGCCTCCTTTTGTTGGCTATGGATTAGGCCCCATGGACATGTCG-TTT 1697 Query 2138 GGTGGGGGTATGAATATGATGCATCCAGATCCATT--CATGGCACAAGGATTTGGGTTCC 2195 || || | | | ||||||||||||||| || | || |||| || || ||||||| Sbjct 1698 GGCGG---T--G--T--GATGCATCCAGATCCTTTTGC-TG-CACAGGGCTTCGGGTTCC 1746 Query 2196 CTAATATACCACCACCCCATAGGGACCTAGCTGAAATGGGAAACCGAATGAATCTCCAAC 2255 | ||||||| |||||| |||||||||| || || ||||| || || ||||||||||| | Sbjct 1747 CAAATATACGACCACCTTATAGGGACCTTGCGGAGATGGGGAATCGTATGAATCTCCAGC 1806 Query 2256 GTGCTATGATGGGCAGAGATGAAGCCGAAGCCC-GAAACGCTGAGATGTTAAGAAAACGT 2314 | |||| ||||| ||||| ||| |||||| |||| ||||||||| |||||| ||| Sbjct 1807 ATCCTATAATGGGGAGAGAAGAATTTGAAGCCAAGAAA-GCTGAGATGAAAAGAAAGCGT 1865 Query 2315 GAAAACGAGAGACGACCTGAAGGTGGGAA-GAT-GTTTAGGGATGGAGAGAATAGCAGAA 2372 || ||||||||||| | ||||| ||||| | | || ||||| || || || ||||||| Sbjct 1866 GACAACGAGAGACGGTCAGAAGGAGGGAATG-TCGTC-AGGGACGGTGAAAAGAGCAGAA 1923 Query 2373 TGATGATGAACAACGGTACTTCAGCCTCTG-CATCATCCATCAACCCTAATAAATCTAGA 2431 | | ||||||||| | | |||| ||| | ||| |||| || || || || |||||| Sbjct 1924 T-A--ATGAACAAC--T-CGGCAGCATCTTTC-TCACCCATGAAGCC-AA-AA-TCTAGA 1973 Query 2432 CAAGCACCTCCACCACCAATC-CA-CG-ATTACGATCGCCGGAGACGACCGGAGAAGAGA 2488 |||| |||||||||||| || | || |||| || || || || ||| |||||| || Sbjct 1974 CAAGGACCTCCACCACCGATTTCGTCGGATTATGACCGTCGCAGGCGATCGGAGA-GAT- 2031 Query 2489 CTATCCCCAGAGC 2501 |||| ||||||| Sbjct 2032 -TATCACCAGAGC 2043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 124562436429 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5