BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47540.1 Length=1638 Score E Sequences producing significant alignments: (Bits) Value Ahg948148 jgi|Araly1|948148|scaffold_800035.1 1777 0.0 Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1 1092 0.0 > Ahg948148 jgi|Araly1|948148|scaffold_800035.1 Length=1076 Score = 1777 bits (962), Expect = 0.0 Identities = 1037/1074 (97%), Gaps = 2/1074 (0%) Strand=Plus/Plus Query 353 GATATCGGCGGTGCGAAGATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGAC 412 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4 GATATCGGCGGTGCGAAAATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGAC 63 Query 413 CTTGTTCGACAAACCCGCGATCTCCTTCTCTTCTCCGATCGATCTACCTCTTTGCCTGAC 472 |||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| Sbjct 64 CTTGTTCGACAAACGCGCGATCTCCTTCTCTACGCCGATCGATCTACCTCTTTGCCTGAC 123 Query 473 CTCCGAGATTCCAAACGCGACGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATG 532 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 124 CTCCGAGAATCCAAACGCGAAGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATG 183 Query 533 AAGTCGATTCTCTACGGGAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTG 592 |||||||||||||| || ||||| ||||| |||||||| || |||||||||||||||||| Sbjct 184 AAGTCGATTCTCTATGGAAACAGTGAAGCCGAGCCTGTCGCTGAAGCTTGTGCACAGTTG 243 Query 593 ACTCAAGAATTCTTTAAAGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 ACTCAAGAATTCTTTAAAGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT 303 Query 653 AACTTGGAGACGAGGAAAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTT 712 ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 AACTTGGAGGCTAGGAAAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTC 363 Query 713 AATTCACGGTTGATTGCTTCTGATTAT-TTAGAAGCCAACATTGATCTCATGGATGTTTT 771 ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| Sbjct 364 AATTCACGGTTGATTGCATCTGATTATCTT-GAAGCCAACATTGATCTCATGGATGTTTT 422 Query 772 GATTGAAGGCTTCGAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTG 831 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 423 GATTGAAGGCTTCGAGAACACAGACATGGCTTTACACTATGGGGCTATGTTTAGAGAGTG 482 Query 832 TATCCGTCATCAGATTGTGGCTAAATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTT 891 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 483 CATCCGTCATCAGATTGTGGCTAAATATGTTTTGGAGTCTGACCACGTGAAGAACTTCTT 542 Query 892 TGATTACATACAGCTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGGA 951 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 543 CGATTACATACAGCTTCCTAATTTCGACATTGCTGCTGATGCTGCTGCTACTTTTAAGGA 602 Query 952 ACTGCTGACAAGGCATAAGTCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTT 1011 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 603 ACTGCTGACAAGGCATAAATCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTT 662 Query 1012 TTTCGCAGACTACAACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGC 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 TTTCGCAGACTACAACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGC 722 Query 1072 TATTAAGTTGTTGGGTGATATATTATTGGATCGATCAAATTCAGCTGTGATGACGAAATA 1131 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 723 TATTAAGTTGTTGGGTGATATATTACTGGATCGATCAAATTCAGCTGTGATGACGAAATA 782 Query 1132 TGTGAGCTCGAGGGATAACTTGAGGATTCTCATGAATCTTCTAAGAGAGTCAAGCAAGAG 1191 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 783 TGTGAGCTCAAGGGATAACTTGAGGATTCTCATGAATCTTCTGAGAGAGTCAAGCAAGAG 842 Query 1192 TATCCAAATAGAAGCATTCCATGTCTTTAAGCTGTTTGCAGCGAACCAAAACAAGCCTGC 1251 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 843 TATCCAAATAGAAGCATTCCATGTCTTCAAGCTGTTTGCAGCGAACCAAAACAAGCCTGC 902 Query 1252 GGATATAGTCAACATTCTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTT 1311 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 GGATATAGTCAACATTTTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTT 962 Query 1312 GAAACCAGACAAAGAGGATGAGAGGTTTGAAGCAGACAAAAGTCAGGTTTTGAGAGAAAT 1371 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 GAAACCAGATAAAGAGGATGAGAGGTTTGAAGCAGACAAAAGTCAGGTTTTGAGAGAAAT 1022 Query 1372 CGCAGCCCTTGAACCTCGAGATCTTGCTTGAACCAACTAATGCAATTCATCCTT 1425 ||||||||||||||| ||||||||||||||||||||| || |||| |||||||| Sbjct 1023 CGCAGCCCTTGAACCACGAGATCTTGCTTGAACCAACCAACGCAAATCATCCTT 1076 > Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1 Length=1430 Score = 1092 bits (591), Expect = 0.0 Identities = 895/1042 (86%), Gaps = 20/1042 (2%) Strand=Plus/Plus Query 371 ATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGACCTTGTTCGACAAACCCGC 430 |||| ||| |||||||| || || ||||| ||||| ||||| |||||||||| || ||| Sbjct 230 ATGAGAGGTCTTTTCAAATCCAAACCACGGACTCCCGCTGATATTGTTCGACAGACTCGC 289 Query 431 GATCTCCTTCTCTTCT-CCGATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACG 489 |||||||| ||| | | |||||||||| | |||||| |||||||| ||||| |||||||| Sbjct 290 GATCTCCTCCTC-TATGCCGATCGATCCAACTCTTTCCCTGACCTTCGAGAGTCCAAACG 348 Query 490 CGACGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGG 549 ||| |||||| ||| |||| ||||| || || || || |||||| |||||||| || Sbjct 349 CGAGGAAAAGCTGGTGGAACTAAGCAAGAGCATACGAGATTTGAAGTTAATTCTCTATGG 408 Query 550 GAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAGAATTCTTTAA 609 ||||| || || |||||||| | ||||||||||| ||||||||||| || |||||||| Sbjct 409 AAACAGTGAGGCTGAGCCTGTTTCTGAAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAA 468 Query 610 AGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT-AACTTGGAGACGAGGA 668 | |||||||| || | |||| | |||| ||| ||| || || ||||||||| | |||| Sbjct 469 GGCTGATACTCTTCGCCGCTTGCTCACTTCTCTTCCT-AATTTGAACTTGGAGGCCAGGA 527 Query 669 AAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTTAATTCACGGT-TGATT 727 |||||||||||||||||||||||||||| ||||||||||| || ||||||| || | ||| Sbjct 528 AAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCAC-GTCTTATT 586 Query 728 GCTTCTGATTAT-TTAGAAGCCAACATTGATCTCATGGATGTTT-TGA-TTGAAGGCTTC 784 ||| |||||||| || ||| ||||||||||||| |||||| ||| | | | || || ||| Sbjct 587 GCTGCTGATTATCTT-GAATCCAACATTGATCTTATGGAT-TTTCT-AGTCGATGGGTTC 643 Query 785 GAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTGTATCCGTCATCAG 844 || ||||| || ||||| |||||||||||| |||||||||| ||||| ||||| |||||| Sbjct 644 GAAAACACTGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGCCATCAG 703 Query 845 ATTGTGGCTAAATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTTTGATTACATACAG 904 ||||| || |||||||||||||| ||| | || |||||||| || ||| | ||||||||| Sbjct 704 ATTGTTGCAAAATATGTTTTGGACTCTCAGCACGTGAAGAAGTTTTTTTACTACATACAG 763 Query 905 CTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGGAACTGCTGACAAGG 964 ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 764 CTTCCCAATTTCGACATTGCTGCTGATGCTGCTGCAACTTTTAAGGAACTTCTGACAAGG 823 Query 965 CATAAGTCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTTTTTCGCAGACTAC 1024 || |||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| Sbjct 824 CACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGTTTTTTTCAGACTAC 883 Query 1025 AACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGCTATTAAGTTGTTG 1084 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 884 AACTCAAAGCTTCTTGAATCAACTAATTATATTACCAGACGGCAAGCTATTAAGTTGTTG 943 Query 1085 GGTGATATATTATTGGATCGATCAAATTCAGCTGTGATGACGAAATATGTGAGCTCGAGG 1144 |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| | Sbjct 944 GGTGATATATTATTGGATCGGTCAAATTCGGCTGTGATGACGAAGTATGTGAGCTCGATG 1003 Query 1145 GATAACTTGAGGATTCTCATGAATCTTCTAAGAGAGTCAAGCAAGAGTATCCAAATAGAA 1204 ||||||||||||||||| ||||||||||| ||||| |||||||||| ||| || |||||| Sbjct 1004 GATAACTTGAGGATTCTGATGAATCTTCTCAGAGAATCAAGCAAGACTATTCAGATAGAA 1063 Query 1205 GCATTCCATGTCTTT-AAGCTGTTTGCAGCGAACCAAAACAAGCCTGCGGATATAGTCAA 1263 || |||||||| ||| |||||||||| ||||||||||||||||||| | || || | ||| Sbjct 1064 GCTTTCCATGT-TTTCAAGCTGTTTGTAGCGAACCAAAACAAGCCTTCAGACATCGCCAA 1122 Query 1264 CATTCTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTTGAAACCAGACAA 1323 |||||||||||| ||||||| ||||||||||||||||||||||||| | || | ||||| Sbjct 1123 CATTCTGGTGGCAAACAGAAACAAGCTTCTGAGATTGTTGGCTGATATCAAGCTGGACAA 1182 Query 1324 AGAGGATGAGAGGTTTGAAGCAGACAAAAG-TCAGGTTTTGAGAGAAATCGCA-GCCCTT 1381 |||||| ||||||||||||||||||||| | ||||||| ||||||| || ||| ||| || Sbjct 1183 AGAGGACGAGAGGTTTGAAGCAGACAAA-GCTCAGGTTGTGAGAGAGATTGCAAGCC-TT 1240 Query 1382 GAACCT-CGAGATCTTGCTTGA 1402 || || ||||| ||||||||| Sbjct 1241 -AAGCTGCGAGAGCTTGCTTGA 1261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61401474940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5