BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47560.1 Length=2267 Score E Sequences producing significant alignments: (Bits) Value Ahg494217 jgi|Araly1|494217|fgenesh2_kg.8__33__AT5G47560.1 3040 0.0 > Ahg494217 jgi|Araly1|494217|fgenesh2_kg.8__33__AT5G47560.1 Length=2157 Score = 3040 bits (1646), Expect = 0.0 Identities = 2014/2184 (92%), Gaps = 55/2184 (3%) Strand=Plus/Plus Query 99 TTAAAAACGGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGATCCGACGATC 158 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1 TTAAAAACAGAATAAACAGAATGAACGGTGGTGATGTCACCGTCGCCGGTTCCGACGA-C 59 Query 159 -TGAAATCTCCGCTCTTACCGGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 217 ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 60 GTGAAATCTCCGCTTTTACCAGTCGTCCATAATGATGAACCATTCGAACGACAAACGGTG 119 Query 218 GGACAACAACTTCGGACAATATTCACGCCCAAAAACTGTTACATCGCTCTTGGTCCTCTT 277 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 120 GGACAACAACTCCGGACAATATTCACGCCCAAGAATTGTTACATCGCTCTTGGTCCTCTT 179 Query 278 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGGGGAGATGAAACGACGACGGCGAGG 337 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 180 CTTTGCGCCGTCGTGTGTCTATGCGTAGATCTCGGCGGAGATGACACGACGACGGCGAGG 239 Query 338 AACATGCTCGGTGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 397 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AACATGCTCGGCGTTTTGGTGTGGATGTTCGCGTGGTGGTTGACGGAGGCCGTTCCGATG 299 Query 398 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGTATATCGGCTGCGGAT 457 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 300 CCGATCACCTCCATGACGCCGCTCTTCCTCTTCCCTCTCTTTGGAATATCGGCGGCGGAT 359 Query 458 GACGTAGCAAATTCTTACATGGATGACGTCATCTCCCTTGTACTCGGCAGCTTCATACTT 517 ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 360 GACGTGGCGAATTCTTACATGGATGACGTAATCTCCCTTGTCCTCGGCAGCTTCATACTC 419 Query 518 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTTGCCCTTAACATAACGTTGGTG 577 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 GCTCTCGCCGTCGAACACTACAACATCCATCGCCGGCTCGCCCTTAACATAACGTTGGTG 479 Query 578 TTCTGCGTGGAGCCGCTAAACGCGCCGCTACTTCTGCTTGGCATCTGCGCCACAACAGCG 637 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 480 TTCTGCGTGGAGCCTCTAAACGCGCCGCTGCTTCTGCTTGGCATCTGCGCCACAACGGCG 539 Query 638 TTCGTAAGCATGTGGATGCATAACGTAGCAGCTGCAGTCATGATGATGCCTGTCGCTACG 697 ||||| |||||||||||||| |||||||||||||| |||||||||||||| || |||||| Sbjct 540 TTCGTGAGCATGTGGATGCACAACGTAGCAGCTGCGGTCATGATGATGCCAGTGGCTACG 599 Query 698 GGGATACTTCAGAGACTGCCCTCGTCATCATCGACGACGGAAGTGGTGCATCCGGCCGTG 757 ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 600 GGGATACTTCAGAGACTGCCCTCTTCATCATCGTCGACAGAAGTGGTGCATCCGGCCGTG 659 Query 758 GGGAAGTTTAGCAGGGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 817 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGGAAGTTTTGCAGAGCGGTGGTGTTAGGTGTGATATACTCTGCGGCGGTTGGTGGGATG 719 Query 818 AGCACACTCACTGGAACAGGAGTGAATCTGATTCTTGTTGGAATGTGGAAAAGCTACTTC 877 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 720 AGCACACTCACTGGAACAGGAGTGAATCTGATACTTGTTGGAATGTGGAAAAGCTATTTC 779 Query 878 CCTGAGGCTGATCCGATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCATTGGCTTTG 937 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 780 CCTGAGGCTGATCCAATCAGTTTTAGCCAATGGTTCTTCTTTGGCTTCCCGTTGGCTTTG 839 Query 938 TGCATATTCGTGGTGCTTTGGTGTGTTCTTTGTGTTATGTATTGTCCTAAAGGAGCAGGA 997 |||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 840 TGCATATTTGTGGTGCTTTGGTGTATTCTATGTGTTATGTATTGTCCTAAAGGAGCAGGA 899 Query 998 CAAGCTCTCTCTCCTTATCTCCATAAATCTCATCTCAGGAGAGAGCTTGATTTGTTAGGG 1057 |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 900 CAAGCTCTTTCTCCTTATCTCCATAAATCTCATCTTAGGAGAGAGCTTGATTTGTTAGGA 959 Query 1058 CCAATGAACTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1117 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CCAATGAATTTCGCTGAGAAGATGGTCTTAGCCGTGTTTGGTGGGTTGGTTGTGTTGTGG 1019 Query 1118 ATGACAAGGAATATAACTGATGATATCCCCGGCTGGGGTCGGATCTTCGCCGGCCGAGCC 1177 |||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| || Sbjct 1020 ATGACAAGAAATATAACAGATGACATCCCCGGCTGGGGTCGGATCTTCGACGGCCGGGCT 1079 Query 1178 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATCATCCCAAGCAATATT 1237 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1080 GGGGATGGAACCGTGAGTGTGATGATGGCGACATTGTTGTTTATTATCCCGAGCAAGATT 1139 Query 1238 AAAAAAGGAGAGAAGCTAATGGACTGGAACAAATGCAAGAAACTACCATGGAACATTGTC 1297 ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| Sbjct 1140 AAAAAAGGAGAGAAGCTAATGGATTGGAGCAAATGCAAGAAACTCCCATGGAACATTGTC 1199 Query 1298 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAG 1357 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTGTTATTGGGAGCTGGATTCGCTATAGCCGATGGAGTACGCACCAGTGGCTTAGCTGAA 1259 Query 1358 GTCTTATCCAAAGGACTTGTCTTCCTTGAAACGGCTCCTTACTGGGCCATTGCTCCAACG 1417 ||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| Sbjct 1260 GTCTTATCCAAAGGACTAGTCTTTCTCGAGACAGCTCCTTACTGGGCCATTGCTCCAACC 1319 Query 1418 GTTTGCCTCATCGCTGCTACCATCACAGAGTTCACTTCAAACAACGCAACCACTACATTG 1477 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1320 GTTTGTCTCATCGCCGCTACCATCACAGAGTTCACCTCAAACAACGCAACCACTACATTG 1379 Query 1478 TTGGTTCCGTTACTCATCGAAATCGCAAAGAACATGGGGATCCATCCTTTGCTCTTGATG 1537 |||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 1380 TTGGTTCCGTTACTGATCGAGATTGCAAAGACCATGGGGATCCATCCTTTGCTCTTGATG 1439 Query 1538 GTTCCAGGAGCCATTGGGGCTCAGTTCGCTTTCTTGCTTCCCACGGGAACACCCTCTAAC 1597 || || || ||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1440 GTCCCTGGTGCCATAGGGGCTCAGTTCGCTTTCTTGCTCCCCACGGGAACACCTTCTAAC 1499 Query 1598 GTCGTTGGGTTCACGACAGGGCATATAGAGATCAAAGACATGATCAAGACAGGCTTGCCT 1657 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1500 GTCGTTGGGTTCACAACAGGGCATATAGAGATCAAAGACATGATCAAAACAGGCTTGCCT 1559 Query 1658 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 CTCAAGATCGCTGGAACCATCTTTCTCTCCATCTTGATGCCCACTCTTGGGGCTTACGTT 1619 Query 1718 TTTGCATCAATGGGAGGAGTTTAGTTCTACAAGCCAAGCACAAGACCATGT--ACACAAT 1775 |||||||||| ||||||||||||||||||| ||| |||||||||| ||| | |||| || Sbjct 1620 TTTGCATCAAAGGGAGGAGTTTAGTTCTACGAGCGAAGCACAAGAACATATGGACACTAT 1679 Query 1776 TGATTTATTGTACTATATTGTTTACTACCGTAATACATATG-T-AGAT-ATATAGTCAAT 1832 ||||| ||||||||||| ||| | | || || |||| | | || | || | | | Sbjct 1680 TGATTCATTGTACTATAATGT--AG-A---TA-TA--TATGGTCA-ATGA-AT-G--A-T 1724 Query 1833 GGAATGGGAAATTTAGATGAGGTC---AAAATTCACAAAATCGGCCCATTTTTGTAACCC 1889 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 1725 GGAATGGGAAATTTAGATGTGGTCGCCAAAATTCACAAAATCGGCCCATTTTTGTAACCC 1784 Query 1890 GCCCGATTATAGTTTCCGGTACCATTGCTTTCTTTTGTGCTTCCAACGTACCGG-TAACT 1948 ||| |||||||||||||||||| |||||||||||| |||| |||||||||| || ||| | Sbjct 1785 GCCTGATTATAGTTTCCGGTACGATTGCTTTCTTTAGTGCGTCCAACGTAC-GGATAAGT 1843 Query 1949 TTGGTCCCtttttttttttG-TTTGGTGTGTATATGAAAAAGGGT--T-AATACAGATTT 2004 |||||| ||||||||||| ||| | | || || | || | | ||||||||||| Sbjct 1844 TTGGTCTTTTTTTTTTTTTACTTT--T-TCTAAATTTTTA-GGTTAATTAATACAGATTT 1899 Query 2005 GTGTGTTCTTCTTCCTAACAA-TAGCAACTAGTGGCAAATCCAGCGCGCGGTCCAAC--- 2060 |||||||||||||| | || | | || |||||||||| |||||||| | |||||| Sbjct 1900 GTGTGTTCTTCTTCTTTACTAGT-GCCACTAGTGGCATATCCAGCG-G---TCCAACTTT 1954 Query 2061 -CTGGCCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTTCGGTTTTCTac 2119 ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1955 ACTGACCATACCATACCACGTCATTGTCCAGCGTGTCTTCTTCTGTTTCCGGTTTTCTAC 2014 Query 2120 aaacacaaaaagcaaagaa-aacaaaa---caTCAATGCATGGTTTATAACGTCTTGCTT 2175 |||| |||||||||||||| || |||| ||| |||||||||||| ||||| ||||||| Sbjct 2015 AAACTCAAAAAGCAAAGAAGAAAAAAAAAACATTAATGCATGGTTTGTAACG-CTTGCTT 2073 Query 2176 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTCTTTCTTTGTCCTTTGCTATACAC 2235 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2074 TTTAATTAGTTTTTGTCCTTTACACTCATTTATGTTATTTCTTTGTCCTTTGCTATATAC 2133 Query 2236 T--A---CTTGTCTATTGAATAAT 2254 | | |||||||||| |||||| Sbjct 2134 TGGAGTACTTGTCTATTAAATAAT 2157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85360239045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5