BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47610.1 Length=726 Score E Sequences producing significant alignments: (Bits) Value Ahg494214 jgi|Araly1|494214|fgenesh2_kg.8__30__AT5G47610.1 950 0.0 > Ahg494214 jgi|Araly1|494214|fgenesh2_kg.8__30__AT5G47610.1 Length=654 Score = 950 bits (514), Expect = 0.0 Identities = 577/607 (95%), Gaps = 5/607 (1%) Strand=Plus/Plus Query 12 AAGATGCGTTTGCTAGTAGCAGAAGCAGCTTCACCATTGTCCTCTGCTGCAACTCCAACA 71 ||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| Sbjct 1 AAGATGCGTTTGCTAGTAGAAGAAGTAGCTTCACCATTGCCCTCTGCTTCAACTCCAACA 60 Query 72 TGTAACTCTCATACTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 131 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTAACTCTCATGCTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAAT 120 Query 132 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCT 180 Query 192 GCAATTCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 251 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCAATCCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCT 240 Query 252 GAAGCAGCTGCTTCATCCACTCCAACAACTCCTACACTTGTCTACTCCTCCGACCTTGAA 311 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 241 GAAGCAGCTGCTTCATCCACTGCAACAACTCCTACGCTTGTCTACTCCTCCGACCTTGAA 300 Query 312 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTTGAACAAGGAGAAAGC 371 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 301 CTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTCGAACAAGGAGAGAGC 360 Query 372 ATTCAAGTGCTGGAGAAATGTCAGCATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 431 || |||||||| |||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 361 ATCCAAGTGCTAGAGAAATGCCAACATGGTTTCCATGTTAAGTGTATCCACAAATGGCTC 420 Query 432 TCTACTCGCTCCTCCTGTCCCACTTGCAGAACTTCTATCTTCTCACAACACTCTGAAACT 491 ||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||| Sbjct 421 TCTACTCGCTCCTCCTGTCCCACTTGCCGGACTTCTATCTTCACACAACACTCGGAAACA 480 Query 492 CCTTCAAGCCACATCAATGCTTAGCTTCttt-tttt-AATCTTGT-TTTTCCAAAAGCTT 548 ||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct 481 CCTTCAAGCCAGATCAATGCTTAGCTTCTTTATTTTTAATCTTGTCTTTTCCAAA-GCTT 539 Query 549 TAGAGTTGTATCATGTTTTGCTTGAGATTA-CCCTGTATCTGCTCTGTATTATTAGGTAA 607 ||||||||||||||||||||||||||| || |||||| |||| | |||||||||| |||| Sbjct 540 TAGAGTTGTATCATGTTTTGCTTGAGACTAGCCCTGTTTCTGTTTTGTATTATTAAGTAA 599 Query 608 CGTAGAC 614 ||||||| Sbjct 600 CGTAGAC 606 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26724164817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5