BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47620.4 Length=2066 Score E Sequences producing significant alignments: (Bits) Value Ahg915275 jgi|Araly1|915275|Al_scaffold_0008_26 1749 0.0 > Ahg915275 jgi|Araly1|915275|Al_scaffold_0008_26 Length=1296 Score = 1749 bits (947), Expect = 0.0 Identities = 1033/1076 (96%), Gaps = 0/1076 (0%) Strand=Plus/Plus Query 633 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGTAGTATTTAATAAAAGTAACA 692 ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| Sbjct 221 TTGTTGAGGCAAAGAAGGCTGTTCCAAGAGATGATCACGCAGTTTTTAACAAAAGTAACA 280 Query 693 GCAGCCTTCAGGGATCACCTGGCCCATCAAACTCCAAGAAGATCTTTGTGGGAGGTTTGG 752 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 281 GCAGCCTTCAGGGATCACCTGGCCCATCAACCACCAAGAAGATCTTTGTGGGAGGTTTGG 340 Query 753 CATCATCCGTGACAGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 812 | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 341 CTTCATCGGTGACTGAGGCTGAGTTCAAAAAGTATTTTGCTCAGTTTGGGATGATCACTG 400 Query 813 ATGTTGTGGTGATGTATGACCACAGAACCCAGCGGCCTAGAGGCTTTGGGTTCATTTCAT 872 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 401 ATGTTGTGGTGATGTATGACCACAGAACTCAGCGGCCGAGAGGCTTTGGGTTCATCTCAT 460 Query 873 ATGACTCTGAGGAAGCTGTTGACAAAGTACTGCAGAAGACATTCCACGAACTCAATGGTA 932 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 461 ATGACTCTGAGGACGCTGTTGACAAAGTGCTGCAGAAGACATTCCACGAACTCAATGGTA 520 Query 933 AGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGATATGGCTCTCAACACAATGCGGAACC 992 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 521 AGATGGTGGAGGTCAAACTCGCTGTTCCTAAGGAAATGGCTCTCAACACAATGCGGAACC 580 Query 993 AAATGAATGTAAATAGCTTTGGCACTAGTAGAATCAGTTCATTACTGAATGAGTACACCC 1052 |||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||||| Sbjct 581 AAATGAATGTAAATAGCTTTGGCAGTAGTAGAATCAGTACATTGCTGAACGAGTACACCC 640 Query 1053 AGGGATTCAGCCCGAGTCCAATCTCTGGTTATGGAGTGAAACCTGAAGTTAGGTACAGTC 1112 | ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| Sbjct 641 AAGGATTCAGCCCGACTCCAATCTCTGGCTATGGAGTAAAACCTGAAGTTAGGTACAGTC 700 Query 1113 CAGCAGTAGGTAATAGGGGAGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 1172 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 701 CAGCAGTAGGTAATAGGGGCGGATTCTCACCGTTTGGACATGGATACGGAATCGAGCTGA 760 Query 1173 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGTGGAGGCTTTGGACGAC 1232 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 761 ATTTTGAGCCAAACCAGACTCAGAACTACGGTTCTGGTTCCAGCGGAGGCTTTGGACGAC 820 Query 1233 CCTTTAGCCCTGGATATGCTGCGAGTCTCGGCAGGTTCGGTAGCCAAATGGAGTCGGGAG 1292 ||||||||||||| |||||||||||||||||||| | ||||||||| ||||| |||||| Sbjct 821 CCTTTAGCCCTGGGTATGCTGCGAGTCTCGGCAGATACGGTAGCCAGATGGAAACGGGAG 880 Query 1293 GAGCTAGTGTTGGGAACGGTTCTGTCCTAAATGCAGCACCAAAGAACCATTTATGGGGAA 1352 |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 881 GAGCTAGTGTCGGGAACGGTTCTGTGCTAAATGCAGCAACAAAGAACCATTTATGGGGAA 940 Query 1353 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 ATGGTGGTCTAGGTTACATGTCAAACTCTCCGATATCAAGAAGCAGCTTCAGTGGAAACT 1000 Query 1413 CTGGAATGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGTTGCACGTGCACGCA 1472 |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 1001 CTGGAACGTCTTCACTAGGCAGCATTGGTGACAACTGGGGAACAGCTGCACGTGGACGTA 1060 Query 1473 GTAGCTACCACGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1532 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1061 GTAGCTACCCCGGTGAGAGAGGAGGTGTAGGATTAGAAGCAATGAGAGGAGTTCATGTTG 1120 Query 1533 GTGGTTACAGCAGCGGCTCAAGCATCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1592 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1121 GTGGTTACAGCAGTGGCTCAAGCAGCTTGGAGGCAGACTCTCTGTACAGCGACTCGATGT 1180 Query 1593 GGCTTTCGCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGACCATTGGACTTCATGT 1652 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1181 GGCTTTCTCTGCCTGCAAAGGCAGAGGAAGGATTGGGAATGGGAGCATTGGACTTCATGT 1240 Query 1653 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1241 CTAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGGAATTGCAGCTTAG 1296 Score = 377 bits (204), Expect = 1e-103 Identities = 216/222 (97%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 347 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAAATGGAATCATGTAAGCTCTTCATCGGTGGTATATCTTGGGAAACCAGTGAAGAT 60 Query 407 CGTCTTCGTGACTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 466 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGTCTTCGTGAGTATTTTCACAGTTTTGGTGAGGTTTTAGAGGCTGTTATTATGAAGGAT 120 Query 467 CGTGCCACTGGCCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTAATGTTGCT 526 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 CGTGCCACTGGTCGTGCTCGTGGCTTTGGTTTCGTTGTCTTTGCTGATCCTATTGTTGCT 180 Query 527 GAAAGAGTCGTCTTGCTTAAACATATCATTGATGGTAAAATT 568 || ||||||| |||||||||||||||||||||||||||||| Sbjct 181 GAGCGAGTCGTTTTGCTTAAACATATCATTGATGGTAAAATT 222 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77704099800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5