BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47650.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494209 jgi|Araly1|494209|fgenesh2_kg.8__25__AT5G47650.1 1727 0.0
> Ahg494209 jgi|Araly1|494209|fgenesh2_kg.8__25__AT5G47650.1
Length=1052
Score = 1727 bits (935), Expect = 0.0
Identities = 1020/1060 (96%), Gaps = 10/1060 (1%)
Strand=Plus/Plus
Query 57 ACAGTTGCTCCACCACGAGGAACAGATCCATGTCTGCTTCTAGTTCCTCCACAAATCCCA 116
||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 1 ACAGTTGCTTCACCACGAGGAACAGATCCATGTCTGCTTC---TTCCTCCGCTAATCCCA 57
Query 117 TGTCCCGTGAGGACGCAACAACACTGCTTCCGTCTGTTCAAGACAAGTACGGTGGCGTGA 176
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGTCCCGTGAGGA-G--GCAACACTGCTTCCGTCTGTTCAAGACAAGTACGGTGGCGTGA 114
Query 177 TGACCGAGATGACTCATCCCATGGATCCTTCTCTCTTCTCCACACTTCTCCGATCCTCTC 236
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TGACGGAAATGACTCACCCCATGGATCCTTCTCTCTTCTCCACACTTCTCCGATCCTCTC 174
Query 237 TATCTACCTGGACTCTTCAGGGCAA-AAAGGGAGTGTGGATCAAGTTGCCAAAGCAGCTT 295
| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 175 TCTCTACCTGGACTCTTCAGGGCAAGAAA-GGAGTGTGGATCAAATTGCCAAAGCAGCTT 233
Query 296 ATTGGTCTTGCTGAAACTGCTGTTAAGGAGGGATTCTGGTTTCACCACGCGGAGAAAGAC 355
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 234 ATCGGTCTTGCTGAAACTGCTGTTAAGGAAGGATTCTGGTTTCATCACGCGGAGAAAGAC 293
Query 356 TACTTGATGCTTGTCTATTGGATTCCCAAAGAAGACGATACGCTTCCTGCCAATGCATCT 415
|||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 294 TACTTGATGCTTGTGTATTGGATTCCAAAAGAGGACCATACGCTTCCTGCCAATGCATCT 353
Query 416 CACCGTGTTGGCATAGGTGCCTTTGTCATTAACCACAACAAAGAGGTGCTGGTGGTTCAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CACCGTGTTGGCATAGGTGCCTTTGTCATTAACCACAACAAAGAGGTGCTGGTGGTTCAA 413
Query 476 GAGAAGACAGGGAGATTTCAAGGTCAAGGTATCTGGAAGTTCCCCACCGGAGTTGTGAAT 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 414 GAGAAGACAGGGAGATTTCAAGGCCAAGGTATCTGGAAGTTCCCCACCGGAGTTGTGAAT 473
Query 536 GAGGGTGAAGACATTCATGATGGCTCAGTCAGAGAGGTGAAAGAAGAGACCGGAGTGGAT 595
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAGGGTGAAGACATCCATGATGGCTCAGTCAGAGAGGTGAAAGAAGAGACCGGAGTGGAT 533
Query 596 ACAGAATTCGACCAAATATTGGCCTTCAGACAAACACACAAAGCGTTCTTTGGAAAGTCA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ACAGAATTCGACCAAATATTGGCCTTCAGACAAACACACAAAGCGTTCTTTGGAAAGTCA 593
Query 656 GATTTGTTCTTCGTGTGCATGTTAAAGCCCCTTTCTTTGGAGATCAACGCACAGGAGTCA 715
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 GATTTGTTCTTCGTGTGCATGTTAAAGCCCCTTTCTTTGGAGATCAATGCACAGGAGTCA 653
Query 716 GAGATTGAGGCAGCTCAGTGGATGCCTTGGGAGGAATACATAAATCAACCATTTGTACAA 775
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 654 GAGATTGAGGCAGCTCAGTGGATGCCTTGGGAGGAATACATAAAGCAACCATTTGTACAG 713
Query 776 AATTATGAGCTATTGAGGTATATGACAGACATTTGCTCTGCTAAAACCAACGGAGACTAC 835
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 714 AATTATGAGCTATTGAGGTACATGACAGACATTTGCTCTGCTAAAACCAAAGGAGACTAC 773
Query 836 GAAGGCTTCACTCCTCTCCGCGTCTCTGCACCTGATCAACAAGGCAACTTGTACTACAAC 895
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 774 GAAGGTTTCACTCCTCTCCGCGTCACCGCACCTGATCAACAAGGCAACTTGTACTACAAC 833
Query 896 ACCCGCGACTTACATTCGCGCAATTGACCTTCTTTCTCAACAAACAGAGCTTTCCTCACA 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 ACCCGCGACTTACATTCGCGCAATTGACCTTCTTTCTCAACAAACAGAGCTTTCTTCACA 893
Query 956 GATTCTAACGAAGCTGGTTTCTTTGCTGCCTCTCTATGTAAGCATTTTGACACTTGAATC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GATTCTAACGAAGCTGGTTTCTTTGCTGCCTCTCTATGTAAGCATTTTGACACTTGAATC 953
Query 1016 ACTACATAACTCTCACCAAAACATAAA-AGCATCCCAAATGAAAACATTTGCATTCAATA 1074
|||||||| |||||| | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 954 ACTACATAGCTCTCAGCTAAACATAAAGA-CATCCCAAATGAAAACATTTGCATTCAATA 1012
Query 1075 CAATGGCTTTAGTTACATACAAGATTCAATGAAGCAGATT 1114
||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CAATGGCTTTAGTTACATACAAGATTCAATGAAGCAGATT 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5