BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47730.1 Length=1851 Score E Sequences producing significant alignments: (Bits) Value Ahg948127 jgi|Araly1|948127|scaffold_800014.1 1759 0.0 > Ahg948127 jgi|Araly1|948127|scaffold_800014.1 Length=1067 Score = 1759 bits (952), Expect = 0.0 Identities = 1029/1067 (96%), Gaps = 1/1067 (0%) Strand=Plus/Plus Query 465 AGAGGAAG-GAGTCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 523 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGGAAGTGAGCCAAAACAATGGGGATCGTTTCAGAAGAAGCCATTGATGAATTCCAAG 60 Query 524 AGCTGATGGATCAAGTTGAGGAGCCACTGAAGAAAACTTATGAGAGAGTCCATCAGGGAT 583 |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| Sbjct 61 AGCTGATGGATCAAGTTGAGGAGCCATTGAAGCAAACATATGAGAGAGTCCATCAGGGAT 120 Query 584 ATCTAAGGGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAACGTATGCAAAGCTC 643 |||| || ||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 121 ATCTGAGAGAGAATTTGGGTCGTTTTCTGAAAGCACGAGACTGGAGCCTATGCAAAGCTC 180 Query 644 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACACAATGCTGGTTGAGTGTTTGCGTTGGAGGGTGGATAATGAAATTGACAGTATCCTAT 240 Query 704 CTAAACCAATTGTTCCTACTGAGTTGTATAGGGATGTACGAGATTCTCAACTCATAGGAA 763 | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 CCAAACCCATTGTTCCTACTGAGTTGTATAGGGACGTACGAGATTCTCAACTCATAGGAA 300 Query 764 TGTCAGGTTACACCAAAGAGGGCTTGCCGGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 823 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 301 TGTCAGGTTACACCAAAGAGGGCTTGCCTGTCTTTGCTATTGGCGTCGGCCTCAGCACAT 360 Query 824 TTGACAAAGCTTCTGTTCACTACTATGTCCAATCTCACATACAAATCAATGAATATAGAG 883 | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 361 TCGACAAAGCTTCTGTTCACTACTATGTCCAGTCCCACATACAAATCAATGAATATAGGG 420 Query 884 ACCGTGTTTTACTGCCTTCTATTTCTAAGAAGAATGGGAGGCCAATCACCACCTGCGTCA 943 ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 421 ACCGTGTATTACTGCCTTCTATCTCTAAGAAGAATGGGCGGCCAATCACCACCTGCGTCA 480 Query 944 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCTCTAAGCCAAATCAAGTTAGTGACTA 1003 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 481 AGGTTCTAGACATGACGGGGTTGAAGCTTTCAGCGCTAAGCCAAATCAAGTTAGTGACTA 540 Query 1004 TCATATCGACCATTGATGATCTCAACTATCCAGAGAAGACAAACACGTACTATGTTGTGA 1063 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 541 TCATATCGACCATCGATGATCTCAACTATCCAGAGAAGACAAACACTTACTATGTTGTGA 600 Query 1064 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ACGCTCCATATATATTTTCCGCATGTTGGAAGGTTGTAAAACCTCTTTTACAAGAGAGGA 660 Query 1124 CAAGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAGGGATGAATTATTGAAGATTATGG 1183 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 661 CACGGAAAAAAGTTCATGTCTTATCCGGTTGCGGAAAGGATGAATTATTGAAGATTATGG 720 Query 1184 ACTTCACATCCCTGCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 1243 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 ACTTCACATCCCTCCCACATTTCTGTAGAAGTGGAAGCTCTGGGTCATCTCACCACACTC 780 Query 1244 AGAGCGCAAATTGTTTTTCTATCAATCATCCCTTCCATCAACAGCTATACAACTATGTGA 1303 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 781 AGAGCGCAAATTGTTTTTCTATCGATCATCCCTTCCATCAACAGCTATACAACTATGTGA 840 Query 1304 AGCACCATTATGAAACCCAAGGACAAGCAGAACCTGCAAAGCAAGGATCATTCCACGTGG 1363 |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 841 AGCACCATTACGAAACCCGGGGACAAGCAGAACCTGCAAAGCAAGGATCGTTCCACGTGG 900 Query 1364 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAGCTGC 1423 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 901 GTTTTCCTGAGCCTGAAGCTGAACGTTGTGTGATAGCCAAAACCATAGAATCGGAACTGC 960 Query 1424 ACAAGTTTGAGAACCGCAACGGTCTGGCCGTGTCCATTGATGACAGAAAATCCAGTCATG 1483 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 961 ACAAGTTTGAGAACCGCAACGGTCTGGCCATGTCCATTGATGACAGAAAAGCCAGTCATG 1020 Query 1484 AAACACTGGCAAATGGTGACCTCTGAATGCTTCTGAGGGAATTCCTT 1530 |||| | |||| ||| ||||||||||||||||||||||||||||||| Sbjct 1021 AAACGCAGGCAGATGATGACCTCTGAATGCTTCTGAGGGAATTCCTT 1067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69514697125 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5