BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G47750.1 Length=2277 Score E Sequences producing significant alignments: (Bits) Value Ahg494187 jgi|Araly1|494187|fgenesh2_kg.8__3__AT5G47750.1 3347 0.0 > Ahg494187 jgi|Araly1|494187|fgenesh2_kg.8__3__AT5G47750.1 Length=2191 Score = 3347 bits (1812), Expect = 0.0 Identities = 2034/2141 (95%), Gaps = 16/2141 (1%) Strand=Plus/Plus Query 151 TGCATGTAATTGAAGCAGCAACCAT-T-T-C--TACTTTTCGAATCTTCTCTGCTTCAAT 205 |||||||||||| |||||||| ||| | | | ||||||||||||||||||||| |||| Sbjct 52 TGCATGTAATTGTAGCAGCAAGCATATATACTGTACTTTTCGAATCTTCTCTGCGCCAAT 111 Query 206 CCACACCCAAGGGTTTCAAGGAATATGGGTCTTTCCCGTTAGCTAAAGATAAT-TAATTT 264 |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| | |||| Sbjct 112 CCACACCCAAGGGTTTGAAGGAAGATGTGTCTTTCCCGTTAGCTAAAGATAATCT-ATTT 170 Query 265 TGTGT-CCGATGGCGTCCACTCGTAAACCCAGTGGTCATGGAGCTGAAGTCGAAGCTCAG 323 ||||| || |||||||| |||||||||||||||| |||| ||||||| ||||||||||| Sbjct 171 TGTGTCCCAATGGCGTCTACTCGTAAACCCAGTGCTCATAAAGCTGAAATCGAAGCTCAG 230 Query 324 AAGCGCTCCTCTTCGAATAGTAG---TACTAAGTCAGCCAAAGCCGAGACTTTTGAGCCG 380 |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 231 AAGCGCTCCTCTTCAAATAGTAGTAATACTAAGTCAGCCAAAGCCGAGATTTTTGAGCCG 290 Query 381 ATGCAATTACAAAGATCAGTAACAAACCCAAGAGCTGTTGGAATTCCGGAGAGTAAACGG 440 | ||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| Sbjct 291 ACGCAGTTACAAAGATCACTAACAAATCCAAGTGCTGTTGGAATTCCGGAGAGTAAACGG 350 Query 441 TTGCCAGAGTCTTTTAGGAAGCGATCTAGCGACCCGGCTGTTTGTAAACCCGATTTCAGC 500 ||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 351 TTGCCAGAGTCGTTTAAGAAGCGATCTAGTGACCCAGCTGTTTGTAAACCCGATTTTAGC 410 Query 501 TCCCTATCCACTGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 560 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TCACTATCCACCGTTCTTGAGCATGTAGATTCATTGACCATTGATGAAAAGAAAACATCT 470 Query 561 GGCTTTGGCAGCGTCAAGACCAGCTCTGCTTCAGCCAAATTGAGTGATGGTACGAGCAGT 620 ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 471 GGCTTTGGCAGTGTCAAGACCAGCTCTGCTTCAGCCAAAATGAGTGATGGTACCAGCAGT 530 Query 621 CTTGGCAAGACTAGTGGAAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 680 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 531 CTTGGCAAGACAAGTGGTAGTGCCAAGCTAAGTGGCCGCCTTGATTTCATGGAGAGTGGC 590 Query 681 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTGAGTGACGAGAGTAGCTGCAGC 740 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 591 AAGAGCAGTATCTGCAGAGGAAGCACAAGCAGTGATGTCAGTGACGAGAGTAGTTGCAGC 650 Query 741 AGCTTTAGTAGCACTGTCAACAAACCCCACAAGGCCAATGACTTAAGATGGGAAGCAATC 800 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 651 AGCTTTAGCAGCACTGTCAACAAACCCCACAAGGCCAATGACTTGAGATGGGAAGCAATC 710 Query 801 CAGGCTGTTAGGGTTCGTGATGGGCTTTTAGGTCTTAGTCATTTCAGGCTCCTTAAGCGG 860 ||||||||||||||||| |||||| |||||||||| || |||||||||||||||||| || Sbjct 711 CAGGCTGTTAGGGTTCGGGATGGGGTTTTAGGTCTGAGCCATTTCAGGCTCCTTAAGAGG 770 Query 861 TTAGGCTGCGGGGACATCGGGAGTGTTTATCTCTCTGAGCTGAGCGGGACTAAGTGTTAC 920 |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 771 CTAGGCTGCGGGGACATTGGGAGTGTTTATCTCTCTGAGCTTAGCGGGACTAAGTGTTAC 830 Query 921 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TTTGCTATGAAGGTTATGGACAAGACATCCCTTGCCAGTCGCAAGAAGCTTCTCCGAGCT 890 Query 981 CAGACTGAAAGAGAGATTCTCCAGTCTTTGGATCATCCATTTCTCCCTACCCTCTACACT 1040 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 891 CAGACCGAAAGAGAGATTCTCCAGTCTTTGGATCATCCGTTTCTCCCTACCCTCTACACT 950 Query 1041 CACTTTGAGACTGAGAAATTCTCATGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1100 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 951 CACTTTGAGACTGAGAAGTTCTCGTGCCTGGTGATGGAATTCTGTCCCGGAGGAGATTTG 1010 Query 1101 CATACTCTCAGGCAACGCCAGCCGGGGAAACATTTTTCTGAGCAAGCGGTAAAATTTTAC 1160 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1011 CATACTCTCAGGCAACGCCAGCCGGGGAAGCATTTTTCTGAGCAAGCCGTAAAATTTTAC 1070 Query 1161 ATAGCAGAGTCATTGTTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGAGAT 1220 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1071 ATAGCAGAGTCATTGCTAGCTTTGGAATACCTGCACATGCTTGGGATTGTGTATCGCGAT 1130 Query 1221 CTTAAGCCTGAAAACGTTCTAGTTCGAGAAGACGGACATATAATGCTCTCTGATTTTGAC 1280 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1131 CTTAAGCCTGAAAACGTTCTAGTTCGGGAAGACGGACATATAATGCTCTCTGATTTTGAC 1190 Query 1281 CTTTCTCTCCGATGTCTTGTCAGCCCGACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1340 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1191 CTTTCACTCCGCTGTCTTGTCAGCCCCACTCTAGTGAAATCTGCCGCCATCGAGTCAGAT 1250 Query 1341 CCTTTACGGAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1400 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 CCATTACGAAAAAACGTTTACTGTGTGCAGCCCGCTTGCATTGAGCCCTCCTGCATTCAA 1310 Query 1401 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 CCGTCTTGCACCGTCCCCACCACTTGCTTCTCCCCACGTTTGTTCTCAAGCAAATCTAAG 1370 Query 1461 AAGGACCGTAAACCCAAGAATGACACCGCAAATCAAGTTAGGCCATTGCCAGAGCTGGTA 1520 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1371 AAGGACCGTAAACCCAAGAATGACACCGCGAATCAAGTTAGGCCGTTGCCAGAGCTGGTA 1430 Query 1521 GCCGAGCCAACCGATGCACGTTCCATGTCATTTGTGGGCACACACGAGTACTTGGCCCCA 1580 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1431 GCCGAGCCAACCGATGCACGGTCCATGTCATTTGTGGGCACACACGAGTACTTAGCCCCA 1490 Query 1581 GAGATCATCAAAGGCGAAGGGCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATATTC 1640 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1491 GAGATCATCAAAGGCGAAGGCCATGGCAGTGCAGTGGATTGGTGGACTTTTGGGATCTTC 1550 Query 1641 CTTTACGAGCTTCTCTTTGGGAGAACGCCCTTCAAGGGCTCAGGAAACCGACAAACACTG 1700 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1551 CTTTACGAGCTTCTCTTTGGGAGAACGCCTTTCAAGGGCTCAGGAAACCGACAAACACTG 1610 Query 1701 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACGCCTGTGGTGAGTTTTGCAGCG 1760 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1611 TTCAATGTGGTGGGTCAGCCTCTGCGGTTCCCAGAAACACCTGTGGTGAGTTTTGCAGCG 1670 Query 1761 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAGCAGCGGCTGGGGTTCAAACGG 1820 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1671 AGAGACCTCATCCGGGGCTTGCTCATGAAGGAGCCGCAACAGCGGCTGGGGTTCAAACGG 1730 Query 1821 GGAGCCACTGAGGTTAAGCAGCACCCTTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1880 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1731 GGAGCCACTGAGGTTAAGCAGCACCCGTTCTTCGAAGGTGTGAACTGGGCTTTGATTCGG 1790 Query 1881 TGTGCGACTCCCCCGGAAATACCAAAGCCGGTTGAGCTGGAAAAAGGAGCTGTGAGTGTT 1940 ||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||| Sbjct 1791 TGTGCGACTCCACCGGAAATCCCAAAGCCGGTTGAGCTGGAAAAGGGACCTGTGAGTGTT 1850 Query 1941 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCGGGTTTGGTTCTGAATGCTCAGAAAGGG 2000 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1851 GCAGAGGCACCATCAAGCCAGAAGACAGCAGCCGGTTTGGTTCTGAATGCTCAGAAAGGG 1910 Query 2001 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGGTACTCTA 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1911 TCTGATAACTATTTGGAATTTGATTTCTTCTAGCGTTACGGTTAGACATATGTTACTCTA 1970 Query 2061 TTCTTCCTTAGAAGACTATGTGATAAA-A-GATGATCAGGTGTTGATGTTTCGCTCTTTA 2118 |||||||||| |||||| |||| |||| | ||||||||||||||||||||||||| |||| Sbjct 1971 TTCTTCCTTAAAAGACTCTGTGGTAAAGATGATGATCAGGTGTTGATGTTTCGCTTTTTA 2030 Query 2119 TAGATTGCCATGAATTGTAAGCTTGTTTGTATGCATAAGCTGCTGTAGTTTATAAAAATG 2178 ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 2031 TAGATTGTCATGAATTGTATGCTTGTTTGTATGCATAAGCTGTTGTAGTTTATAAAAATG 2090 Query 2179 TTGTAACTGTTTCTCGTAACCTTATTAGTTGTTATCAGAGTTCCTTTTTACTCGCTCTAT 2238 |||||||||||||||||||| ||||||||| |||||||| |||||||| ||| |||||| Sbjct 2091 TTGTAACTGTTTCTCGTAACGTTATTAGTTTTTATCAGAATTCCTTTTCACTTACTCTAT 2150 Query 2239 CCAAACACAAAAC--ATTA-CATCAAATGTATTGTCTCTGC 2276 | || ||||||| | || ||||||||||||||||||||| Sbjct 2151 CGAATGACAAAACGCAGTAACATCAAATGTATTGTCTCTGC 2191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85741141495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5