BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G47840.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949118 jgi|Araly1|949118|scaffold_801005.1 1186 0.0
> Ahg949118 jgi|Araly1|949118|scaffold_801005.1
Length=966
Score = 1186 bits (642), Expect = 0.0
Identities = 736/780 (94%), Gaps = 11/780 (1%)
Strand=Plus/Plus
Query 26 AGAAAGAGAG--TGGGAGAGAGACATGACGGGCTGTGTGAATTCTATTTCTCCGCCGCCG 83
|||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 6 AGAAAGAGAGATTGAGAGAGAGACATGACGGGCTGTGTGAATTCTATTTCTCCGCAGCCG 65
Query 84 GTGACTTTATACCGGCATCGTGCCTCTCCGTCA-C-G-GT--C-GTC--C-TTCTCATTA 134
|||||||||||||||| |||||||||||||||| | | | | ||| | ||||||||
Sbjct 66 GTGACTTTATACCGGCCTCGTGCCTCTCCGTCACCAGCTTCACGGTCATCTTTCTCATTT 125
Query 135 TCCGGCGATGCCTTACACTCTCTTTACCGGCACCGACGTGTATCAAGATCTCCGTCGATT 194
||||| ||| || |||||||||||||||| | ||||||||| || || ||||||||||||
Sbjct 126 TCCGGAGATTCCGTACACTCTCTTTACCGTCTCCGACGTGTTTCGAGGTCTCCGTCGATT 185
Query 195 ATCGCTCCCAAATTTCAGATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATA 254
||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 186 ATCGCCCCCAAATTCCAGATCGTGGCGGCTGAAAAATCGGAGCCTCTCAAAATTATGATT 245
Query 255 TCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAATATGGT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAATATGGT 305
Query 315 TTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTTCTGGAAGTGAAAAT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTTCTGGAAGTGAAAAT 365
Query 375 GGAAGACGTGCTAAAGAACATATGGAGAAAGGACAATTGGTCCCTGATGAAATAGTTGTA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GGAAGACGTGCTAAAGAACATATGGAGAAAGGACAATTGGTCCCTGATGAAATAGTTGTA 425
Query 435 ATGATGGTAAAAGATCGTTTATCACAGACAGATTCAGAGCAAAAAGGATGGCTTTTGGAT 494
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 426 ATGATGGTAAAAGATCGTTTATCGCAGACAGATTCAGAGCAAAATGGGTGGCTTTTGGAT 485
Query 495 GGATATCCAAGGAGTGCATCACAGGCAACAGCTCTCAAGGGATTTGGATTCCAGCCTGAT 554
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 GGATATCCAAGGAGCGCATCACAGGCAACAGCTCTCAGGGGATTTGGATTCCAGCCTGAT 545
Query 555 CTATTCATTGTCCTCGAAGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGA 614
|||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 546 CTATTCATTGTCCTGGAAGTTCCTGAAGATATACTTATTGAAAGAGTTGTTGGGCGTCGA 605
Query 615 TTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAGAG 674
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 606 TTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCTCCTCCAGAGACAGAAGAG 665
Query 675 ATTGCTGTTAGACTCACCCAACGTTTTGATGATACCGAAGAGAAGGCAAAACTGCGGCTG 734
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ATTGCTGCTAGACTCACCCAACGTTTTGATGATACCGAAGAGAAGGCAAAACTGCGGCTG 725
Query 735 AAGACTCATAACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAG 794
|| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 726 AAAACTCATAACCAAAATGTGAGAGATGTGCTTTCTATGTACGACGATATTACTATTAAG 785
Score = 283 bits (153), Expect = 2e-75
Identities = 173/183 (95%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 867 AGGAACACTGCTCCAAGTTCACTTTTAAGTTGATTCGTTCTTGGTACAAACCTGATGAAG 926
|||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 784 AGGAACACCGCTCCAAGTTCACTTTTAAGTTGAATCATTCTTGGTACAAACCTGAGGAAG 843
Query 927 TGCTTACCCAGATCGACACTACTATGTCCAAATTGCTTCAACAGAGGAACTCTGCTTCAA 986
||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 844 TGCTTGCCCAGATCTACACTACTGTGTCCAAATTGCTTCAACAGAGGAACACTGCTTCAA 903
Query 987 GTTCACTTGTAAGTTGAATCATTCTTAGCAAGGACCTAACCAGCGGTAAATATCCTTTCT 1046
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 904 GTTCACTTTTAAGTTGAATCATTCTTGGCAAGGACCTAACCAGCGGTAAATATCCTTTCT 963
Query 1047 TGC 1049
|||
Sbjct 964 TGC 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5