BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48180.1 Length=1395 Score E Sequences producing significant alignments: (Bits) Value Ahg494872 jgi|Araly1|494872|fgenesh2_kg.8__688__AT5G48180.1 1639 0.0 > Ahg494872 jgi|Araly1|494872|fgenesh2_kg.8__688__AT5G48180.1 Length=1238 Score = 1639 bits (887), Expect = 0.0 Identities = 1121/1227 (91%), Gaps = 43/1227 (4%) Strand=Plus/Plus Query 1 AACAATAGCCACAAAACTTTTTTCTTTCATCCTCTaaaaaaaaaTCTTTCTGGTGAGTAA 60 ||||| | |||||||||||||||||||||| |||| ||||| |||||||||||||||||| Sbjct 1 AACAACAACCACAAAACTTTTTTCTTTCATTCTCT-AAAAATAATCTTTCTGGTGAGTAA 59 Query 61 CG-----aaaaaaaTGTGTCCGGTGGAGAACAAAT-GGTTAAAGGTGGGTCAAAAAGGAG 114 || |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 60 CGAAAAAAAAAAAATGTGTCCGGTGGAGAACAAATGGGTT-AAGGTGGGTCAAAAAGGAG 118 Query 115 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGGAACAAAGTTTACTGTT 174 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 119 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGTAACAAAGTTTACTGTT 178 Query 175 TTGGTGGTGAGCTTAAGCCAACGATCCATATTGATAACGATCTTTACGTTTTCGATCTTG 234 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 179 TTGGCGGTGAGCTTAAGCCAACGATCCATATTGACAACGATCTTTACGTTTTCGATCTTG 238 Query 235 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGAGGCTCCTTTCCCCTGTTTTGGTG 294 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 239 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGACGCTCCTTTCCCCTGTTTTGGTG 298 Query 295 TCTCGATGGTAACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAACGGA 354 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 299 TCTCGATGGTCACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAAAGGA 358 Query 355 GATACAACGGTCTTCATTCGTATGATACTGAGACCAATGAGTGGAAATTGTTGGCTCCTG 414 | |||||||||||| |||||| ||| |||||||| |||||||||||||||||| |||| | Sbjct 359 GGTACAACGGTCTTTATTCGTTTGAAACTGAGACTAATGAGTGGAAATTGTTGTCTCCGG 418 Query 415 TTGAGGAAGGGCTTCCTGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 474 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TTGAGGAAGGGCTTCCGGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 478 Query 475 ATGTGTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 534 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ATGTCTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 538 Query 535 TTGATCAGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 594 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTGATCGGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 598 Query 595 CAGGG-CTTGTGGTTGTGGAAGGGAGAATTTGGGTTTTGTTTGGGTTTGATGGTAATGAA 653 | ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 599 C-GGGACTTGTGGTTGTGGAAGGGAAAATATGGGTTTTGTTTGGGTTTGATGGTAATGAA 657 Query 654 TTGGGTGATATTCATTGTTTTGACTTGGCTAGTGAACAGTGGAAGGCTGTGGAGACTACC 713 ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| Sbjct 658 TTGGGTGATATTCATTGTTTTGATTTGGCTAGTGAGCAATGGAAAGCTGTGGAGACTACC 717 Query 714 GGGGATGTACCGGCGGCGAGAAGCGTGTTTCCGGCGGTTTCTTACGGGAAGTACATTGTT 773 || ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 718 GGAGATGTACCGCCGGCGAGAAGCGTGTTTCCGGCGGTTTCGTATGGGAAATACATTGTT 777 Query 774 ATTTATGGTGGGGAGGAAGAGCCGCATGAGCTT-ATGCACATGGGAGCTGGGAAGAT-GT 831 ||||||||||||||||||||||| |||||| || ||||| |||||||||||||| || | Sbjct 778 ATTTATGGTGGGGAGGAAGAGCCACATGAG-TTGATGCATATGGGAGCTGGGAA-ATTGA 835 Query 832 CTGGAGAGGTTTATCA-GCTTGATACAGAGACGTTAGTGTGGGAGAGGATTGTGTGCGG- 889 ||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||| | | Sbjct 836 CTGGAGAAGTTTA-CAAGCTTGATACAGAGACATTAGTGTGGGAGAAGATTGTG-GATGT 893 Query 890 GAATGAAGAGGAGAAGCCGAG-CCAACGTGGGTGGTGCGCGTTTACGAAAGCGGTTAAGG 948 ||| || ||||||||||| || ||| || |||||||| |||||| || |||||||||| Sbjct 894 GAACGAGGAGGAGAAGCCTAGTCCA-CGCGGGTGGTGTGCGTTTGCGGCTGCGGTTAAGG 952 Query 949 ATGGTGAGGAAGGTTTGTTGGTTCATGGTGGGAATTCTCCGACCAATGAGCGGCTTGATG 1008 |||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||||||| Sbjct 953 ATGGTGAGGAAGGTCTGTTGGTTCATGGTGGTAATAGTCCGACCAACGAGAGGCTTGATG 1012 Query 1009 ATTTGGTGTTTTGGGGTTTCTCTCATCTTAATGTCAATTAATGACTAGCTGCTTTGTGTC 1068 |||||||||||||||||||||||| ||||||||||||||||||| | | ||||||||| Sbjct 1013 ATTTGGTGTTTTGGGGTTTCTCTCGTCTTAATGTCAATTAATGAGT---TACTTTGTGTC 1069 Query 1069 TTTCGTTTATAAAGTGTTTAGTGTGT-T--GT-T-GTTTTAAGGAGTTTAAGTGGTGATG 1123 |||||||| |||| || ||||||||| | || | ||||||||||||||| ||||||||| Sbjct 1070 TTTCGTTTGTAAACTGCTTAGTGTGTGTATGTGTTGTTTTAAGGAGTTTATGTGGTGATG 1129 Query 1124 ATATGTAACTGCTAAGTGTCTGTGTTTAAGGAGCTATGTGTGGTGA-AACTTTG-CTACC 1181 |||||||||||||||||||||| | | ||||||| | ||| || |||| | ||| Sbjct 1130 ATATGTAACTGCTAAGTGTCTG-----A-G---CTATGTG-G-TGACAA-TTTGTC-ACC 1176 Query 1182 TATTCCAAATAGTTTATTAAGTTTGGT 1208 ||||||||||| ||||| ||||||||| Sbjct 1177 TATTCCAAATATTTTATCAAGTTTGGT 1203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52145545405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5