BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48220.1 Length=1493 Score E Sequences producing significant alignments: (Bits) Value Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1 1858 0.0 Ahg357025 jgi|Araly1|357025|fgenesh1_pg.C_scaffold_8000812 845 0.0 Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2 113 3e-24 > Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1 Length=1416 Score = 1858 bits (1006), Expect = 0.0 Identities = 1254/1366 (92%), Gaps = 47/1366 (3%) Strand=Plus/Plus Query 33 TTGTGATTATCCGCCGCACAGAAGTCTCTCCTCCACTCCAC-AAATAGCATTCCCGGCGA 91 |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| Sbjct 1 TTGTGATTATCCGCCGCACAAAAGTGTCTCCTCCACTCCACAAAATAGCATTCCCGGC-- 58 Query 92 GAGACAGAGAGCGAAGAAGAAGACTCAAACCaaaaaaaaaaaTGGAAGCTGCACTGCTTT 151 ||| ||||||| | ||||||||||| || ||||||||||||| ||| ||| || Sbjct 59 GAG--AGAGAGC---CACGAAGACTCAAA--AAGAAAAAAAATGGAA---GCAATGCGTT 108 Query 152 CTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTTTAACCTCCAC 210 ||||||||| | ||||| |||||||||| ||||||||| ||||||| ||||||| ||||| Sbjct 109 CTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTTTAACATCCAC 167 Query 211 AATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGTCTGGAATCAC 269 ||| |||||||||||| ||||||| | | |||||||||||||||||||||||||||||| Sbjct 168 GATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGTCTGGAATCAC 226 Query 270 AGAAGGTTCTGATTCAGCATTAGAG-GCTAAAG-TAAGTGAGCAAGAAGTGGGAATGTAC 327 |||||||| | | || | || | || ||| | ||||| ||||||||||| |||||| Sbjct 227 TGAAGGTTCCGGTAAAG--TAAGTGATCTCAAGATTAGTGAACAAGAAGTGGGGATGTAC 284 Query 328 CAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGATAAGGAGAAGACCACCTACTGGACCT 387 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 285 CAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGATAAGGAGAAGACCACCTACTGGACCT 344 Query 388 CCATTGCATTACGTTGGACCTTTTGAGTTCCGGCTTCAGAACGAGGGAAACACGCCTCGT 447 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 345 CCATTGCATTACGTTGGACCTTTTGAGTTCCGCCTCCAGAACGAGGGTAACACGCCTCGT 404 Query 448 AACATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGA 507 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AATATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGG 464 Query 508 AAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 567 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 AAGCCTCTTTATACCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 524 Query 568 GGTGCTCTTAGATCGGCTCACCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 627 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 525 GGTGCTCTTAGATCAGCTCATCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 584 Query 628 AAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGGATTTTAACCCTGTTGAAATTGCACAA 687 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 585 AAAGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTAACCCGGTTGAAATTGCACAA 644 Query 688 GCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 747 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 GCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 704 Query 748 GGAAGCTATGAGAACCTGCAAGCTATAATGGAAGCTGGTGTGAAGTGCCCTTTGCTATTG 807 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 705 GGAAGCTATGAGAACCTGCAAGCTATAAGGGAAGCTGGTGTAAAGTGCCCTTTGCTATTG 764 Query 808 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 824 Query 868 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 884 Query 928 AAAATACTTGGAA-TGGCTACACTTGTGGAGGTCCATGACGAAAGGGAGATGGATCGTGT 986 |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 885 AAAATACT-GAAAATGGCTACACTTGTGGAGGTTCATGACGAAAGGGAGATGGATCGTGT 943 Query 987 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1003 Query 1047 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAACTGATCCGTCA 1106 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1004 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAATTGATCCGTCA 1063 Query 1107 AAAAGACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATCGCCTTTGT 1166 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1064 AAAAAACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATTGCCTTTGT 1123 Query 1167 TCAAGAAGCCGGTGTCAAAGCAGTTTTAGTCGGCGAATCTCTTATTAAACAAAGCGATCC 1226 |||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||| Sbjct 1124 TCAAGAAGCCGGCGTCAAAGCAGTTCTAGTCGGTGAATCTCTTATTAAACAAAGTGATCC 1183 Query 1227 CGGGAAGGCAATCAGCACCCTATTTGGAAGAGATGTCTCAGAGTAAATTCCGAGTAGAAA 1286 ||||||||||||||| |||| |||||||||||| |||| | ||||||||| Sbjct 1184 GGGGAAGGCAATCAGCTCCCTTTTTGGAAGAGATATCTC----------C-GAGTAGAAA 1232 Query 1287 CTTTTTGTATAGAGAAAATCTTCATTGAAGTCTCt-tt----t-t-ttCTTCTTAAG--T 1337 ||||||||||||||||||||||||||| ||||| || | | ||||| |||| | Sbjct 1233 CTTTTTGTATAGAGAAAATCTTCATTGC-GTCTCCATTGAAGTCTCTTCTTTTTAAAAAT 1291 Query 1338 GCCGCTCAAGTGCGCAGAGG-CTTGT-GCCTTTACAGAAATGTCCA 1381 ||||||||| |||| || ||| | ||||||||||||||||||| Sbjct 1292 AATGCTCAAGTGTGCAG-GGACTTTTTGCCTTTACAGAAATGTCCA 1336 Score = 106 bits (57), Expect = 5e-22 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 1405 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1463 ||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| || Sbjct 1335 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1394 Query 1464 TGAGTACATGAGGATAAATCAT 1485 | | |||||||| ||||||||| Sbjct 1395 TCAATACATGAGAATAAATCAT 1416 > Ahg357025 jgi|Araly1|357025|fgenesh1_pg.C_scaffold_8000812 Length=642 Score = 845 bits (457), Expect = 0.0 Identities = 574/627 (92%), Gaps = 22/627 (4%) Strand=Plus/Plus Query 142 GCACTGCTTTCTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTT 200 ||| ||| ||||||||||| | ||||| |||||||||| ||||||||| ||||||| ||| Sbjct 7 GCAATGCGTTCTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTT 65 Query 201 TAACCTCCACAATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGT 259 |||| ||||| ||| |||||||||||| ||||||| | | |||||||||||||||||||| Sbjct 66 TAACATCCACGATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGT 124 Query 260 CTGGAATCACAGAAGG-T--TCTGATTCAGCA-T------T--AG--AG-G--CTAAAG- 301 |||||||||| ||||| | |||||||| ||| | | || || | || ||| Sbjct 125 CTGGAATCACTGAAGGTTCCTCTGATTCGGCATTGGAGGGTAAAGTAAGTGATCTCAAGA 184 Query 302 TAAGTGAGCAAGAAGTGGGAATGTACCAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGA 361 | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 185 TTAGTGAGCAAGAAGTGGGGATGTACCAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGA 244 Query 362 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGGC 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 245 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGCC 304 Query 422 TTCAGAACGAGGGAAACACGCCTCGTAACATCTTGGAAGAGATCGTATGGCACAAGGATA 481 | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 305 TCCAGAACGAGGGTAACACGCCTCGTAATATCTTGGAAGAGATCGTATGGCACAAGGATA 364 Query 482 AAGAAGTTGCTCAGATGAAAGAGAGAAAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATA 541 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 365 AAGAAGTTGCTCAGATGAAAGAGAGGAAGCCTCTTTATACCTTGAAGAAGGCTCTTGATA 424 Query 542 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCACCAAAGAACGGGGT 601 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 425 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCATCAAAGAACGGGGT 484 Query 602 TGCCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGG 661 | |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 485 TACCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGCAGAGGCATCCTTAGAGAGG 544 Query 662 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTG 721 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 545 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTG 604 Query 722 TTTTGACAGATGACAAATACTTCAAGG 748 ||||||||||||||||||||||| ||| Sbjct 605 TTTTGACAGATGACAAATACTTCCAGG 631 > Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2 Length=1685 Score = 113 bits (61), Expect = 3e-24 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 1405 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1463 ||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| || Sbjct 1685 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1626 Query 1464 TGAGTACATGAGGATAAATCATTAACTAC 1492 | |||||||||| ||||||||| | |||| Sbjct 1625 TCAGTACATGAGAATAAATCATCATCTAC 1597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55878389415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5