BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48440.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494898 jgi|Araly1|494898|fgenesh2_kg.8__714__AT5G48440.1 2333 0.0
> Ahg494898 jgi|Araly1|494898|fgenesh2_kg.8__714__AT5G48440.1
Length=1698
Score = 2333 bits (1263), Expect = 0.0
Identities = 1570/1715 (92%), Gaps = 34/1715 (2%)
Strand=Plus/Plus
Query 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAACCTTCTTCTCCAATGGTTTCC 60
||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAA-C--CTTCACCAATGGTTTCC 57
Query 61 ATTTTCCTTCAATCACCCACCTTTTTAACA-CCACTGAGCTACCCATTTTCATCTCGGAG 119
||||||||||||||||| || ||||||| || | ||||||||||||||||||||||||
Sbjct 58 ATTTTCCTTCAATCACCAACAAGTTTAACATCC-CAGAGCTACCCATTTTCATCTCGGAG 116
Query 120 CTCCACCAAGAGAACCCAACATGGAGCTTCTCTGTCACTACGTGTCACAGCTTCTCGTAG 179
||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 117 CTCCACCCGGAGAACCCGACGTGGAGCTTCTCCATCACTTCGTGTCACAGCTTCTCGTAG 176
Query 180 CTCCTT-CGATGTTGTTGTTGTAGGTGGTGGGATCATTGGGTTAACCATAGCCCGCCAAT 238
|| ||| |||||| || ||||| |||||||||||||| || || ||||||||||||||||
Sbjct 177 CT-CTTACGATGTAGTCGTTGTTGGTGGTGGGATCATCGGATTGACCATAGCCCGCCAAT 235
Query 239 TCCTT-ACCGGGTCGGATCTATCTGTTGCTGTTGTCGATAAAGCCGTACCTTGCTCCGGC 297
| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 236 T-CTTAACCGGGTCGGATCTATCCGTTGCTGTTGTCGATAAAGCCGTCCCTTGCTCCGGC 294
Query 298 GCCACCGGTGCCGGGCAGGGATATATATGGATGACACACAAGAAACCAGGCAGTGATGTG 357
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 295 GCCACCGGTGCCGGGCAGGGATATATATGGATGACTCACAAGAAACCAGGCACTGATGTG 354
Query 358 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTG-ACTGA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 355 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTGAAC-GT 413
Query 417 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTGCTCATTGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTACTCATTGG 473
Query 477 TAGGACCACTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCATGAGCTATCTGAAGCTGG 536
|||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 474 AAGGACCTCTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCACGAGCTTTCTGAAGCTGG 533
Query 537 GTTAAGAACTGAATATTTGTCTAGTGCTGAGTTGTTGTTAAAGGAGCCTGCGATACTTGT 596
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 534 GTTAAGAACTGAATATTTGTCTAGTGATGAGTTGTTGTTAAAGGAGCCTGCGGTTCTTGT 593
Query 597 AAATGATAATACTGGTGCTGCATTTCTTCCTGATGATTCACAGTTGGACGCCCATCGTGC 656
|||||||| | || |||||||||||||| ||||||||||| |||| || ||||| ||
Sbjct 594 GGATGATAATTCCGGGGCTGCATTTCTTCCCGATGATTCACAACTGGATGCTCATCGCGC 653
Query 657 GGTTGCTTATATCGAGAAGGGTAATAGAGCGTTTGCAACAGCAGGCAGATATGCCGAGTT 716
||||||||||| ||||||||||| |||| ||||||| | | ||| ||||||||||||||
Sbjct 654 AGTTGCTTATATTGAGAAGGGTAACAGAGAGTTTGCACCTGAAGGAAGATATGCCGAGTT 713
Query 717 CTATAATGAACCAGTTACAGGTTTAATAAGGTCTGATGGG-GATAGCAAGGTGGTTGCTG 775
|||| ||||||||||||||||||||||||||||||||||| | |||| || |||||| |
Sbjct 714 CTATCATGAACCAGTTACAGGTTTAATAAGGTCTGATGGGCG-TAGCGCGGAGGTTGCAG 772
Query 776 GCGTTAAGACTT-TGAAACGCAACTTGTATGGTAAGAAGGCTACTATAGTAGCTGCTGGT 834
| ||| |||||| | ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 773 GTGTTCAGACTTCT-AAACGTAACTTGTATGGTAAGAAGGCTACGATAGTAGCTGCTGGT 831
Query 835 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTCCGCTGGACGTT 894
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTTCGCTGGACGTT 891
Query 895 CCGGTGAAGCCAAGAAAGGGGCATCTGCTTGTGGTAGAGAACTTTGATTCATTCCACTTA 954
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 892 CCTGTGAAGCCAAGAAAGGGGCATCTACTTGTGGTAGAAAATTTTGATTCATTCCACTTA 951
Query 955 AATCATGGGA-TAATGGAGGCTGGTTACTCGAATCATCAAAGTGCTTCAGTTTCAGGATT 1013
|||||| ||| ||||||||||||||||| | ||||||||||||||||||| | |||||||
Sbjct 952 AATCAT-GGATTAATGGAGGCTGGTTACACAAATCATCAAAGTGCTTCAGCTCCAGGATT 1010
Query 1014 GGATGTCGATGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1073
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGATGTCGAGGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1070
Query 1074 CCTTGTTCTTGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1133
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CCTTATCCTCGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1130
Query 1134 CATCCGTTGCATATGGGAGCGTGCTGCAGAATTCTTTCCTAAGTTACGTGATATTTCCCT 1193
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1131 CATCCGTTGCATATGGGAGCGTGCAGCAGAATTCTTCCCCAAGTTACGTGATATTTCCCT 1190
Query 1194 CGAAGATTTCATCCGTAACAGGAAAGTGAGAGTCGGGTTGCGCCCTTACATGCCTGACGG 1253
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1191 CGAAGATTTCATCCGGAACAGGAAAGTGAGAGTCGGGTTGCGTCCTTACATGCCTGATGG 1250
Query 1254 GAAGCCAGTGATAGGATCCGTGCCCGGATTACAAAACATGTACTTAGCAGCTGGGCATGA 1313
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 1251 AAAGCCAGTGATAGGATCCGTGCCCGGACTACAAAACCTATACTTAGCAGCTGGGCATGA 1310
Query 1314 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACGGACATGGTACTAGG 1373
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1311 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACAGACATGGTACTTGG 1370
Query 1374 AAAACCATCA-CAAGTGGATACTTCAACGTTTGGGGTTAAAGGGCGTCGTTGTTGCTGAT 1432
||||| | | || |||||||| ||| |||||||||||||||| ||| | |||||||||
Sbjct 1371 GAAACC-TGAACAGGTGGATACCTCAGCGTTTGGGGTTAAAGGACGT--T-GTTGCTGAT 1426
Query 1433 GAAATAGAAGCAGTTTGGTTTAGTTAAGAGAGTGAATCCTCTTAAGCATTGTGGTTGCTA 1492
||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1427 GAAATAGTAGCAGTTCGGTTTAGTTAAGAGACTGAATCTTCTTAAGCATTGTGGTTGCTA 1486
Query 1493 TAAACGGGGTCTTAAAGGAAATGTCTATGAGCTACATAAATCTAGTGTTGGTTTAGTCC- 1551
|| || ||| ||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1487 -AAT-GGTGTCCCAAAGGAAATTTCTATGAGCTACACAAATCCGGTGTTGGTTTAGTCCC 1544
Query 1552 GGTTTTAGTA-TA----CTAAGACCAATTCTAATTCTACGTCTTTAAACCAGACTTTTTC 1606
|||||||||| || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1545 GGTTTTAGTAATATGTACTAAGACCAATTTTAATTCTACGTCTTGAAACCAGACTTTTTC 1604
Query 1607 TCTAGCTTTCGACATGCATGATCTATTTTT-A-ATACGGTTGATTACAAATATG-TTCCA 1663
|||||||||| |||||| | || ||||||| | ||||||||||||||||||||| |||||
Sbjct 1605 TCTAGCTTTCTACATGCGTTATATATTTTTTATATACGGTTGATTACAAATATGGTTCCA 1664
Query 1664 TTCAAAATATTCTCAAACAATAATTTAACCATTTA 1698
|||||||||| ||||| |||||| |||||||||||
Sbjct 1665 TTCAAAATATACTCAA-CAATAAGTTAACCATTTA 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5