BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48520.1 Length=2337 Score E Sequences producing significant alignments: (Bits) Value Ahg494914 jgi|Araly1|494914|fgenesh2_kg.8__730__AT5G48520.1 3360 0.0 > Ahg494914 jgi|Araly1|494914|fgenesh2_kg.8__730__AT5G48520.1 Length=2048 Score = 3360 bits (1819), Expect = 0.0 Identities = 1978/2054 (96%), Gaps = 13/2054 (1%) Strand=Plus/Plus Query 161 GAGGCAATCGCATAA-TTCCCACCGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 219 |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GAGGCAATCGTATAATTTCCCACAGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 60 Query 220 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGATAGCTTCGAATGGC 279 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 61 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGACAGCTTCGAGTGGC 120 Query 280 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGTCCTT 339 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 121 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGCCCCT 180 Query 340 CCAATGTCCTCTCTCTCGCCGAACTATCACTATATGAGCAATTTCAACGAGATGGGAAAC 399 ||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||| Sbjct 181 CCAATGTCCTCTCCCTCGCTGAACTATCCCTATATGAGCAATTTCAAAGAGATGGGAAAC 240 Query 400 TCTTAGAGGGCGATGATCTAGACCAGGCATATGATAGCATATCAGCATTTTCTTCCAGGA 459 |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 241 TCTTAGAGGGTGACGATCTAGACCAGGCTTATGATAGCATATCAGCATTTTCTTCCAGGA 300 Query 460 GAAATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 519 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAATAACCAGGAGGCGGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 360 Query 520 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAAACTC 579 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 361 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAGACTC 420 Query 580 AATATGATTTACTCACTGGCCAATCTTCAGCTCTTATTCAAGGGAGACGTGCTCGAGTTG 639 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 421 AATATGATTTACTCACTGGCCAATCTTCAGCTCTGATTCAAGGGAGGCGTGCTCGAGTTG 480 Query 640 CTGCAACTTCTGCTGTCTCTGGACAGATAACAGCTATAGAAGACAGTTTATCTGCTCGAA 699 |||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||| Sbjct 481 CTGCAACTTCTGCTGTCTCTGGACAGATAACATCTATAGAAGACAGCCTGTCTGCTAGAA 540 Query 700 ATTTGCAGATGAATGGAGTTCTAGGAAGACTGGCTTCCACTTCTCAAGAGCTGGCGCATT 759 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 541 ATTTGCAGATGAATGGAGTTCTAGGAAGATTGGCTTCCACTTCTCAAGAGCTGGCGCATT 600 Query 760 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCCGATTTCCATGCCTACTTGG 819 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 601 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCTGATTTCCATGCCTACTTGG 660 Query 820 CTGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAGCTAGACACAG 879 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 661 CCGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAACTAGATACAG 720 Query 880 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 780 Query 940 ATACATCTAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGTGTAGCTGAACTCC 999 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 781 ATACATCAAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGCGTAGCTGAACTGC 840 Query 1000 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCCCAGGTGGAGA 1059 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 841 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCTCAGGTCGAGA 900 Query 1060 ATGCTAAGCAACAAGCTATTCTTTTGACACTCAAATCTCAAGTAACATCAGTGGAAGCTC 1119 |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 901 ATGCTAAGCAACAAGCTATTCTCTTGACGCTCAAATCTCAAGTAACATCAGTTGAAGCTC 960 Query 1120 ATATTCATTTTGATCTACATTCTCTGAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1179 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 961 ATATTCATTTTGATCTACATTCTCTAAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1020 Query 1180 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAACTATGTTGGG 1239 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1021 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAATTATGTTGGG 1080 Query 1240 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTCATGC 1299 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1081 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTGATGC 1140 Query 1300 GTCAAGAACTGTATATTAGTAAACAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1359 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1141 GTCAAGAGCTGTATATTAGTAAGCAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1200 Query 1360 CAAGACACCAGTTCTTAAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1419 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 CAAGACACCAGTTCTTGAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1260 Query 1420 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGCTACCTCTCCGCCACAAGAAGCC 1479 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1261 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGTTACCTCTCCGCCACAAGAAGCC 1320 Query 1480 GTGTGGGGCGATGTTCGGCACTGATACAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1539 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1321 GTGTGGGGCGGTGTTCGGCACTGATCCAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1380 Query 1540 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1440 Query 1600 CCCAAGCCGGATTATCAACTTATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1659 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CCCAAGCCGGATTATCAACATATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1500 Query 1660 TTCAATCCGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1719 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1501 TTCAATCGGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1560 Query 1720 ATAGATGCATTAATGAGCTGTGTACCCATATTCAGAATCT-GCAGCAACTGCTCTTTGCG 1778 | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1561 ACAGATGCATTAATGAGCTGTGTACCCATATTCAGAA-CTTGCAGCAACTGCTCTTTGCG 1619 Query 1779 TCTTCAACTACGGCACAACCCATATTGACACCTTGGCCACTGATGAAAGAACTTGATGAA 1838 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1620 TCTTCAACTACGGCACAACCCATATTGACACCATGGCCACTGATGAAAGAACTTGATGAA 1679 Query 1839 ATGGGGAAAATCAACTCCAAACTCTCTACAGCAGTGGAAGAGGTGACGCTTGAGCACCGC 1898 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1680 ATGGGAAAAATCAACTCCAAACTCTCTACAGCGGTGGAAGAGGTGACGCTTGAGCACCGC 1739 Query 1899 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGACGTGGAACTTCAAAGGCGGGTATTT 1958 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1740 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGATGTGGAACTTCAAAGACGGGTATTT 1799 Query 1959 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCACTC 2018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1800 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCGCTC 1859 Query 2019 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTTCTCACTTCTCACCATAAGTACATAGCA 2078 |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| Sbjct 1860 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTCCACACCA-TCACCATAAGTACATAGCA 1918 Query 2079 CAAGTGATCTCTCTT-AGTTTTTTGTCATTTCACTTTGTGATTGTATTATCTAGTGGTTG 2137 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1919 CAAGTGATCTCTCTTTAGTTTTTTGTCATTTCGCTTTGTGATTGTATTATCTAGTGTTTG 1978 Query 2138 ATTGATTTTACTTACTGCCCATCTTCTATTGTTTCTGAG-TTTCGTGGTTT-GT-T-GGG 2193 ||||||||||||| ||| ||||||| | | |||||| || ||| ||||||| || | ||| Sbjct 1979 ATTGATTTTACTTTCTGTCCATCTT-T-T-GTTTCTAAGCTTT-GTGGTTTCGTGTTGGG 2034 Query 2194 GTTATTTGAGCTTT 2207 |||||||| ||||| Sbjct 2035 GTTATTTGTGCTTT 2048 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88026556195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5