BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48540.1 Length=957 Score E Sequences producing significant alignments: (Bits) Value Ahg494916 jgi|Araly1|494916|fgenesh2_kg.8__732__AT5G48540.1 1454 0.0 Ahg925769 jgi|Araly1|925769|scaffold_201330.1 333 1e-90 > Ahg494916 jgi|Araly1|494916|fgenesh2_kg.8__732__AT5G48540.1 Length=924 Score = 1454 bits (787), Expect = 0.0 Identities = 881/927 (95%), Gaps = 4/927 (0%) Strand=Plus/Plus Query 32 TAATGAAGACATTAGTTGTGAAATGTTTCCTTCTATTGGCTCTTGTATGTAGCTGCAGAG 91 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1 TAATGAAGACATTAATTGTGAAATGTTCCCTTCTATTGGCTCTTGTATGTAGCTGCAAAG 60 Query 92 CAGCAGATTCAATATGGCAACTCTGCAACACAAATTCAAACATCTCAGCAAGCAGCCAAG 151 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 CAGCAGATTCAATATGGCAACTCTGCAACACAAACTCAAACATCTCAGCAAGCAGCCAAG 120 Query 152 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCAAAAGGTT 211 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCACAAGGTT 180 Query 212 TCAAGACCACAACTTCTTCAAGTTACAACAACAAAGAGAAAGTGTATGGACTTGCTCAAT 271 || ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 TCGTGACCACAACTTCTCCAAGTTACAACAAAAAAGAGAAAGTGTATGGACTTGCTCAAT 240 Query 272 GTAGAGGAGATATCAGCAATACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 331 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTAGAGGAGATATCAGCAAGACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 300 Query 332 TCCGTGAAGTGTGTCAGAACCAATCCGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 391 |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 301 TCCGTGAAGTATGTCCGAACCAATCTGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 360 Query 392 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 420 Query 452 ACGTCGCTAACGTAACCGAAA-TCGACCCCAAAAAGTTCGATAATGAGCTCGGGGCACTC 510 ||||||||||||||||||||| | |||||||||| ||| || |||||||| ||||||||| Sbjct 421 ACGTCGCTAACGTAACCGAAACT-GACCCCAAAACGTTTGACAATGAGCTTGGGGCACTC 479 Query 511 TTTGACAAAATTAGGTCTGAGGCTGTTTTACCTAAGAATAAAGGTTTAGGTAAAGGTAAG 570 ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| Sbjct 480 TTTGACAAAATTAGGTCTGAGGCGGTTTTGCCTAAGAGTAAAGGTTTAGGTAAAGGTAAG 539 Query 571 ACAAAATTGACACCTTTTGTGACACTAAACGGTTTGGTCCAATGCACGAGAGACTTAAGC 630 |||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 540 ACAAAACTGACACCTTTTGTGACACTAAACGGTTTGGTTCAATGCACAAGGGACTTAAGC 599 Query 631 GAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 690 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GCTTTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 659 Query 691 AACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 750 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 719 Query 751 TTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 810 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 720 TTTTATTTCCCTCTTGATCCGGCTAAAACTGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 779 Query 811 CATCTCTCTCCGTAATCGCATAGTCTAATAAAAGAGTAAGTTTGTTTCTAAAGAGTATAT 870 | ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| Sbjct 780 CGTCTCTCTCCGTAATCACAAAGTCTAATAAAAGAGTAAGTTTGACTCTAAAGAGTATAT 839 Query 871 GTATATGTGTGCAAAATAAGGCTCTTTGCTTATGTTTCTTTCTTTAAGATGCAAGACAAT 930 ||||||||||||||||||||||||| | ||| |||||||| |||||||||| ||| |||| Sbjct 840 GTATATGTGTGCAAAATAAGGCTCTCTCCTTTTGTTTCTT-CTTTAAGATGTAAG-CAAT 897 Query 931 TAAGTAACCAAGTTATTTATGTTCTAG 957 ||||| ||||||||||| |||||||| Sbjct 898 TAAGTTGCCAAGTTATTTGTGTTCTAG 924 > Ahg925769 jgi|Araly1|925769|scaffold_201330.1 Length=428 Score = 333 bits (180), Expect = 1e-90 Identities = 198/207 (96%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 621 AGACTTAAGCGAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGAC 680 ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 204 AGACTTAAGTGCTTTGGATTGCGCTCAATGCTTTGCAACTACGGTCGGGAGCTTCATAAC 263 Query 681 AACTTGCCACAACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 740 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 264 AACTTGCCACAACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 323 Query 741 GTTTTATCCGTTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 800 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 GTTTTATCCGTTTTATTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 383 Query 801 TTCTTCCGTTCATCTCTCTCCGTAATC 827 ||||||||||| ||||||||||||||| Sbjct 384 TTCTTCCGTTCGTCTCTCTCCGTAATC 410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35530558644 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5