BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48545.1
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494917 jgi|Araly1|494917|fgenesh2_kg.8__733__AT5G48545.1 1232 0.0
> Ahg494917 jgi|Araly1|494917|fgenesh2_kg.8__733__AT5G48545.1
Length=836
Score = 1232 bits (667), Expect = 0.0
Identities = 755/797 (95%), Gaps = 8/797 (1%)
Strand=Plus/Plus
Query 66 AATTCATTATTTGCTCGATTCGGAAAATCGTAATTGAATTCAGATAATGGAAGCTAGAAG 125
||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 43 AATTCATTATTTGCTGGATTCGG--AATAATAATTGAATTCAGAAAATGGAAGCTAGAAG 100
Query 126 ACTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GCTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAT 160
Query 186 TCTCAGGGTCTCCGA-T-T-GTAGCTCTGGTTCTTCCGGCGACGGGAAAGTGGAATCATC 242
||||||||| ||||| | | ||||||| | ||||||||||||||||||||||||||||||
Sbjct 161 TCTCAGGGTTTCCGATTGTAGTAGCTCAGCTTCTTCCGGCGACGGGAAAGTGGAATCATC 220
Query 243 TACTCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 302
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CAATCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 280
Query 303 GTTGTACGAGGATGATATGTGTTTGTGTATTCTGGATACTAATCCACTAAGTCATGGGCA 362
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 281 GTTGTACGAGGATGATATGTGTTTGTGTATTTTGGATACTAATCCACTAAGCCATGGGCA 340
Query 363 CTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 422
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTCTCTTATCATTCCCAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 400
Query 423 TGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAG 482
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 401 TGCTGCCATGTGTTCTAAAGTGCCGCTTATCAGCAACGCCATCGTGAAAGCTACCGGTAG 460
Query 483 TGACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACAC 542
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 461 TGATTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGGCAAGTCATATTTCACAC 520
Query 543 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 580
Query 603 GAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTATCGTGTGTTCGACGACA 662
||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 581 GAGACACACTCTGAAACTTGACAAGGAAGCATCTCAATTGGTATCGCGTGTTCGACAACA 640
Query 663 CTTGTGCAGCCTTCCTGAAGAACAACTGGTTCAACCCTCGTAAAAGTCCCTTCTCAAGAA 722
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 641 ATTGTGCAACCTTCCTGAAGAACAAATGGTTCAACCCTCATAAAAGTCCCTTCTCAAGAA 700
Query 723 ACCCATTGTTGTAACTTTAGATACAGAATCCAAACCCAAA-GTATATTCTGTATAGTTCA 781
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 701 ACCCATTGTTGAAACTTTAGATACAGAATCCAAACCCAAAAGTATATTCTGTATAGTTCA 760
Query 782 TATTCAGTCTCA-TTTGATTTCATCTAAATTCTTGAATCTCTGTTACTTTATCAAGATTT 840
|||||||||||| ||| |||| || || |||||||||||| ||||| |||||||||||||
Sbjct 761 TATTCAGTCTCAGTTTCATTT-ATATATATTCTTGAATCTTTGTTATTTTATCAAGATTT 819
Query 841 AGTGATACAAGTAGAAG 857
||||||| |||||||||
Sbjct 820 AGTGATAGAAGTAGAAG 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32175741948
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5