BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48570.1 Length=2130 Score E Sequences producing significant alignments: (Bits) Value Ahg494919 jgi|Araly1|494919|fgenesh2_kg.8__735__AT5G48570.1 2778 0.0 > Ahg494919 jgi|Araly1|494919|fgenesh2_kg.8__735__AT5G48570.1 Length=2023 Score = 2778 bits (1504), Expect = 0.0 Identities = 1900/2080 (91%), Gaps = 72/2080 (3%) Strand=Plus/Plus Query 1 TCGGGACACATCTTTAGGCTCAAGGATTCAAATGAAAATCAGAAGTCTCTAGAAAAACCC 60 ||||||||||||||||||||| ||| | || ||||||||| |||||||| |||||| Sbjct 1 TCGGGACACATCTTTAGGCTC----ATT--ATTG-AAATCAGAATTCTCTAGAGAAACCC 53 Query 61 CAAAA-CACTCT-TT--CT-TCACTC-C-CCCTATAAATTCTCATCACAATTTCTCAAAC 113 |||| |||||| || || || ||| | ||||||||||||||||||||| || | | | Sbjct 54 AAAAAGCACTCTCTTCACTCTCTCTCTCTCCCTATAAATTCTCATCACAA-TT-T--ACC 109 Query 114 CATCTCATCTCTGCCAACACACTCTCTAGAATT-CTCTCGTGATTATCGATTTCACTCTC 172 || || | ||| ||||||| || | | || | ||| | || | | || ||||| Sbjct 110 CAACT--T-TCT--CAACACA--CT-T-G--TTACGCTC-T--CTA-C-AATT--CTCTC 151 Query 173 TTAA-ATTTGATCAGAAAATGGAAGACGATTTCGACACGCAGAACCAGTTTCCGGAAGAG 231 ||| ||||||||| |||||||||||||||| |||| |||| |||||||| |||||| Sbjct 152 GTAATTTTTGATCAG-AAATGGAAGACGATTTTGACATGCAG---CAGTTTCCAGAAGAG 207 Query 232 GAGCCAGAGGAGATGGATATGGATCTCCCCGACAATGACGAAGCTGACTCTGCTCCTTAT 291 || |||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || Sbjct 208 GAACCAGAGGAGATGGATATGGATCTCGCCGACGACGACGAAGCTGACTCTGCTCCTAAT 267 Query 292 CTGAAAATCGGCGAGGA-AATGGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 350 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 268 CTGAAAATCGGCGAGGAGAA-GGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 326 Query 351 GGAATGTGAAAAATGGGACACGCCTGAGAACGGTGACGAAGTTGAAGTGCATTACACTGG 410 |||| ||||||||||||| | |||||||| || ||||||||||||||||||||||| || Sbjct 327 GGAAGGTGAAAAATGGGATATACCTGAGAATGGAGACGAAGTTGAAGTGCATTACACGGG 386 Query 411 AACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 470 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 387 AACTTTGTTAGATGGTACCAAGTTCGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 446 Query 471 TACTCTTGGCCAAGGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 530 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 447 CACTCTTGGCCAAGGACATGTGATCAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 506 Query 531 AGGTGAAAATGCTATTTTCACCATTCCTCCTGAGCTGGCATATGGTGAAACCGGTTCACC 590 ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| Sbjct 507 AGGTGAAAATGCTATTTTCACCATTCCGCCTGAGTTGGCTTATGGTGAAACCGGTTCACC 566 Query 591 GCCGACTATACCTCCGAACGCTACTCTTCAGTTTGATGTGGAGTTGATAGCATGGAGGAG 650 |||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 567 ACCGACTATTCCTCCGAACGCTACTCTTCAATTTGATGTGGAGTTGATATCATGGAGGAG 626 Query 651 TGTTAAGGATATATGTGGTGATGGTGGTGTGTCTAAGAAAATAATTGTGGAAGGAGAAAA 710 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 627 TGTTAAGGATATATGTGGTGATGGTGGGGTGTTTAAGAAAATAATTGTGGAAGGAGAAAA 686 Query 711 ATGGGAGAAGCCAAAAGACCTTGATGAAGTTTACGTCAAGTATGAAGCTCGGCTTGAGGA 770 ||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||| Sbjct 687 ATGGGAGAAGCCAAAGGATCTTGATGAAGTGTATGTCAAGTATGAAGCTCGGCTTGAGGA 746 Query 771 TGGCACCATTGTTGGAAAGTCTGATGGTGTAGAGTTTACTGTCAAGGAGGGCCATTTCTG 830 ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| Sbjct 747 TGGCACCATTGTTGGAAGGTCTGATGGTGCAGAGTTCACTGTCAAGGAGGGCCATTTCTG 806 Query 831 TCCTGCGCTTTCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTGACTGT 890 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 807 TCCTGCGCTTGCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTAACTGT 866 Query 891 GAAGCCACAATATGGATTTGGGGAATTTGGAAGACCAGCTTCTGATGGTCTTCAAGCTGC 950 ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 867 GAAGCCACAATATGGCTTTGGGGAAATTGGAAGACCAGCTTCTGATGGCCTTCAAGCTGC 926 Query 951 AATCCCACCAAATGCAACCCTTCAGATTGACCTTGAGTTGGTTTCTTGGAAGACTGTGGT 1010 |||||||||||||| || ||||| || |||||||||||||||||||||||||| ||||| Sbjct 927 AATCCCACCAAATGTGACTCTTCAAATCGACCTTGAGTTGGTTTCTTGGAAGACGGTGGT 986 Query 1011 GGAAGTAACTGATGACAGGAAGGTTATTAAGAAAATACTCAAGGAAGGAGAAGGATATGA 1070 ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 987 GGAAGTAACTGATGACAAGAAGGTCATTAAGAAAATACTGAAGGAAGGAGAAGGATATGA 1046 Query 1071 GCGTCCCAATGAAGGAGC-GATTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1129 |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1047 GCGTCCTAATGAAGGAGCAG-TTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1105 Query 1130 CAACCGTGTTTGTGAAGAAAGGTCATGAAGAAGATGAGGAGCCGTTCGAGTTCAAGATTG 1189 | ||||| ||||||||||| |||||||||||||||| || ||||||||||| | || Sbjct 1106 CT---GTGTTCATGAAGAAAGGTTATGAAGAAGATGAGGAACCATTCGAGTTCAAAACTG 1162 Query 1190 ATGAAGAACAAGTGATAGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1249 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 ATGAAGAACAAGTAATTGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1222 Query 1250 TAGCACTCATCACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAACAGGAGC 1309 ||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1223 TAGGACTCATAACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAGCAGGAGC 1282 Query 1310 TGGCTGTAATACCGCCAAACTCGACTGTATACTATGAGGTCGAGTTGGTATCTTTCATCA 1369 |||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| Sbjct 1283 TGGCTGTAATACCGCCAAACTCGACTGTATTCTACGAGGTTGAGCTGGTATCTTTCATCA 1342 Query 1370 AGGAGAAAGAGTCTTGGGATATGAACACACAGGAAAGGATAGAAGCTGCAGGCAAGAAGA 1429 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1343 AGGAGAAAGAGTCTTGGGATATGAACACGCAGGAAAAGATAGAAGCTGCAGGCAAGAAGA 1402 Query 1430 AAGAAGAAGGCAATGTGTTGTTCAAAGCTGGAAAATACGCAAGAGCTTCAAAGAGATACG 1489 | |||||||| ||| || |||||||||||||||||||||| ||||||||||||||||| | Sbjct 1403 AGGAAGAAGGGAATATGCTGTTCAAAGCTGGAAAATACGCGAGAGCTTCAAAGAGATATG 1462 Query 1490 AGAGGGGTGTCAAATATATAGAATATGACTCAACTTTCGACGAAGAGGAGAAAAAGAAAT 1549 ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1463 AGAGGGGTGTCAAGTACATAGAATATGAGTCAACTTTCGACGAAGAGGAGAAAAAGAAAG 1522 Query 1550 CAAAAGATCTCAAGATTGCCTGTAACCTGAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1609 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1523 CAAAAGATCTCAAGATTGCCTGTAACCTTAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1582 Query 1610 ATTACAAGGAAGCAGCAAAATTGTCCACAAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1669 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1583 ATTACAAGGAAGCAGCAAAATTGTCCACTAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1642 Query 1670 AGGCAATGTATAGGAGAGCACATGCCTACTTGGAGACGGCGGATCTTGATCTGGCTGAGC 1729 ||||||||| ||||||||||||||||||| |||||||||| ||||||||| | ||||||| Sbjct 1643 AGGCAATGTTTAGGAGAGCACATGCCTACATGGAGACGGCAGATCTTGATTTAGCTGAGC 1702 Query 1730 TTGATATCAAGAAAGCTCTCGAAATCGATCCAGACAACAAGGAGGTGAAGATAGAATATA 1789 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1703 TTGATATCAAGAAAGCTCTCGAAATCGATCCTGACAACAAGGAGGTGAAGATAGAATATA 1762 Query 1790 AGAAGTTGAAGGAGAAGGTGAAAGAGTATAACAAGAAAGATGCTAAGTTTTACAGCAACA 1849 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1763 AGAAGTTGAAGGAGAAGGTGAAAGAGTACAACAAGAAAGATGCTAAGTTTTACAGCAACA 1822 Query 1850 TGTTGTCGAAAATGCTTGAGCCACACAAAGGAACTCAGAAGGAAGCACAAGCGATGAGTA 1909 |||||||||||||||||||||||||||||||| | | | ||||||| Sbjct 1823 TGTTGTCGAAAATGCTTGAGCCACACAAAGGA-----G-------C----G--ATGAGTA 1864 Query 1910 TTGACACCAAGGCATGAGTCTTTGAATCACTTTAGAGAGTCGCATTGATTCCAAAAACTA 1969 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || Sbjct 1865 TTGACACCAAGGCATGAGTCTTTAAATCACTTTAGAGAGTAACATTGATTCCAAAAAGTA 1924 Query 1970 AATGTGAAAAGTCTACAAATTTCTGTTTTTACTCTTTGTAATCAATCTTGGTGTGTGTTA 2029 |||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||| Sbjct 1925 AATGTGAAGAGTCTGTAATTTTCTGTTTT-ACTCTTTGTAATCAATCTTGGTGTGTGTTA 1983 Query 2030 CTGTTTCAGA-GTTGTT-A--TAAAACAGACTTGTAATAA 2065 |||||||||| |||||| | ||||||||||||||||||| Sbjct 1984 CTGTTTCAGACGTTGTTGAAATAAAACAGACTTGTAATAA 2023 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80141875480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5