BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48590.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949280 jgi|Araly1|949280|scaffold_801167.1 1701 0.0
Ahg952182 jgi|Araly1|952182|scaffold_4300007.1 1698 0.0
> Ahg949280 jgi|Araly1|949280|scaffold_801167.1
Length=1079
Score = 1701 bits (921), Expect = 0.0
Identities = 1029/1081 (95%), Gaps = 8/1081 (1%)
Strand=Plus/Plus
Query 50 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 108
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 5 TTTTTTGCTTCTCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTCTCC-TTT 63
Query 109 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 168
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 123
Query 169 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 228
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 124 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 183
Query 229 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 288
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 184 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 243
Query 289 GTGAAAAAACGGCAGCTCTTTCATTTCGCCGTCGCTGATTTGCTTAAACAGCTCGCTGAT 348
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 244 GTGAAAAAGCGGCAGCTCTTTCACTTCGCCGTCGCTGATTTGCTTAAACAGCTTGCCGAT 303
Query 349 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTATGGTTCCGATGAAGCTTCCCTC 408
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 304 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTCTGGTTCCGATGAAGCTTCTCTA 363
Query 409 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAATTGCAATTGAAGACATAATG 468
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAACAGCAATTGAAGACATAATG 423
Query 469 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 483
Query 529 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCGAAAGACTGGGAACTTGAGTCA 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 484 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCAAAAGACTGGGAACTGGAGTCA 543
Query 589 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACATAGTAACGCAGTCATCAGTTTA 648
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 544 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACACAGTAACGCAGTCATCAGTTTA 603
Query 649 AGAGTGAATTCGAGTTTGACTGACGATTGTGCGACAACGGAGATAGATAAGAATCGTCTC 708
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 604 CGAGTGAATTCGAGTTTGACTGACGATTGTGCAACAACGGAGATAGATAAGAATCATCTC 663
Query 709 AGTAAAGTATACACAGCTTCGGTCTTATATGGATACTTTTTAAAATCTGCTTCTCTTAGA 768
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 664 AGTAAAGTATACACAGCATCGGTCTTGTATGGATACTTCTTGAAATCCGCTTCTCTTAGA 723
Query 769 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACTAAGCAACTGAGGCAT 828
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 724 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACCAAGCAACTGAGACAT 783
Query 829 TACATTTCTGAGTTCGATCCCAAGATATTGCGGAGATGCGCAAAACCAAGGTCACATGAA 888
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 784 TACATTTCTGAGTTCGATCCCAAGATATTGCAGAGATGCGCAAAGCCAAGGTCACATGAA 843
Query 889 GCAAAAAGCCTGATAGAAAAGCAGAGTTTAGCTCTTTTTGGTCCTGAGGAAAGCAGCAAA 948
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 844 GCAAAAAGCCTGATAGAGAAGCAGAGCTTAGCTCTTTTCGGTCCTGAGGAAAGCAGCAAA 903
Query 949 GAGAGCATTGTGACATCGTTTTCTAGCCTGAAGAGGTTGCTTCTTGAGGCTGTGGCGTTT 1008
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 904 GAGAGCATTGTGACATCGTTTTCTAACCTGAAGAGGCTGCTTCTTGAGGCTGTGGCTTTT 963
Query 1009 GGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAAT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAAT 1023
Query 1069 GAGAATGCAGAGGAAGAA-ACAAATAGCAGTGTTTGAAGTATGTATGAACCAGTTTGCTA 1127
|||||||||||||||||| | |||||||||||| ||||||||| | | |||||||||||
Sbjct 1024 GAGAATGCAGAGGAAGAAGA-AAATAGCAGTGTATGAAGTATG-A--A-CCAGTTTGCTA 1078
Query 1128 G 1128
|
Sbjct 1079 G 1079
> Ahg952182 jgi|Araly1|952182|scaffold_4300007.1
Length=1079
Score = 1698 bits (919), Expect = 0.0
Identities = 1030/1083 (95%), Gaps = 10/1083 (1%)
Strand=Plus/Plus
Query 50 TTTTTTGCTTATCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTC-CCGTTT 108
|||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 4 TTTTTTGCTTCTCTCTTTCAATGGACACCTCTCTCTCCCACCACGGATCTCTCTCC-TTT 62
Query 109 CCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 168
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTCCCGTCGCGCCGCAATTCCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCC 122
Query 169 TCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAG 228
|||||||||||| |||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 123 TCGCGTCGTAAGGTCCGGTACGATTCGTTGGTGGTGGTTGCGGCTACGTCTTCGGGACAG 182
Query 229 AGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTG 288
||||||||||||||||| |||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 183 AGCATCGACGCGCCTCTGGTTCCACGCTCGGCTCAGGGAAGGTTTCTAAGTACCGTCTTG 242
Query 289 GTGAAAAAACGGCAGCTCTTTCATTTCGCCGTCGCTGATTTGCTTAAACAGCTCGCTGAT 348
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 243 GTGAAAAAGCGGCAGCTCTTTCACTTCGCCGTCGCTGATTTGCTTAAACAGCTTGCCGAT 302
Query 349 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTATGGTTCCGATGAAGCTTCCCTC 408
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 303 GATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTCTGGTTCCGATGAAGCTTCTCTA 362
Query 409 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAATTGCAATTGAAGACATAATG 468
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 363 CACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAACAGCAATTGAAGACATAATG 422
Query 469 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCC 482
Query 529 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCGAAAGACTGGGAACTTGAGTCA 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 483 AGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCAAAAGACTGGGAACTGGAGTCA 542
Query 589 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACATAGTAACGCAGTCATCAGTTTA 648
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 543 ATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACACAGTAACGCAGTCATCAGTTTA 602
Query 649 AGAGTGAATTCGAGTTTGACTGACGATTGTGCGACAACGGAGATAGATAAGAATCGTCTC 708
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 603 CGAGTGAATTCGAGTTTGACTGACGATTGTGCAACAACGGAGATAGATAAGAATCATCTC 662
Query 709 AGTAAAGTATACACAGCTTCGGTCTTATATGGATACTTTTTAAAATCTGCTTCTCTTAGA 768
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||
Sbjct 663 AGTAAAGTATACACAGCATCGGTCTTGTATGGATACTTCTTGAAATCCGCTTCTCTTAGA 722
Query 769 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACTAAGCAACTGAGGCAT 828
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 723 CACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACCAAGCAACTGAGACAT 782
Query 829 TACATTTCTGAGTTCGATCCCAAGATATTGCGGAGATGCGCAAAACCAAGGTCACATGAA 888
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 783 TACATTTCTGAGTTCGATCCCAAGATATTGCAGAGATGCGCAAAGCCAAGGTCACATGAA 842
Query 889 GCAAAAAGCCTGATAGAAAAGCAGAGTTTAGCTCTTTTTGGTCCTGAGGAAAGCAGCAAA 948
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 843 GCAAAAAGCCTGATAGAGAAGCAGAGCTTAGCTCTTTTCGGTCCTGAGGAAAGCAGCAAA 902
Query 949 GAGAGCATTGTGACATCGTTTTCT-AGCCTGAAGAGGTTGCTTCTTGAGGCTGTGGCGTT 1007
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||
Sbjct 903 GAGAGCATTGTGACATCGTTTTCTGA-CCTGAAGAGGCTGCTTCTTGAGGCTGTGGCATT 961
Query 1008 TGGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TGGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAA 1021
Query 1068 TGAGAATGCAGAGGAAGAA-ACAAATAGCAGTGTTTGAAGTATGTATGAACCAGTTTGCT 1126
||||||||||||||||||| | |||||||||||| ||||||||| | | ||||||||||
Sbjct 1022 TGAGAATGCAGAGGAAGAAGA-AAATAGCAGTGTATGAAGTATG-A--A-CCAGTTTGCT 1076
Query 1127 AGA 1129
|||
Sbjct 1077 AGA 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5