BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48630.2
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949285 jgi|Araly1|949285|scaffold_801172.1 1205 0.0
Ahg357071 jgi|Araly1|357071|fgenesh1_pg.C_scaffold_8000858 593 6e-169
Ahg952004 jgi|Araly1|952004|scaffold_29300001.1 512 2e-144
> Ahg949285 jgi|Araly1|949285|scaffold_801172.1
Length=815
Score = 1205 bits (652), Expect = 0.0
Identities = 706/733 (96%), Gaps = 0/733 (0%)
Strand=Plus/Plus
Query 91 CAAAGAGCTTAAGGACCCAGAAGAGGTTAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 150
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 65 CAAAGAGCTTAAGGACCCAGAAGAGGTCAATGTTGTTCATCCTCTTGATGCTCAGAGAGG 124
Query 151 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCATATGTCTAATTATATATCGAAACT 210
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 125 AATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCACATGTCTAATTATATATCGAAACT 184
Query 211 GGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTAACCTATATGCGTCG 270
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 185 GGCACAAAACATTAAGATTAGGCAAAGAGTTATTGCAACTGCAGTAACGTATATGCGTCG 244
Query 271 TGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTTGCTCCTACATGCTT 330
||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 245 CGTTTACACAAGAAAGAGTTTGTCGGAATACGAGCCTCGGCTTGTTGCTCCCACCTGCTT 304
Query 331 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACAT 364
Query 391 GAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGATATTCTGGAAATGGA 450
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 365 GAAAAAACTTTATGCTGATGAAAAGTTTAGATATGAGATCAAAGATATTCTGGAAATGGA 424
Query 451 GATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGATCTCT 510
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 425 GATGAAGGTCTTGGAAGCTTTGAACTTCTATCTTGTTGTATTCCACCCATACCGATCTCT 484
Query 511 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAACTTGGGG 570
|||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 485 GCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACAAGTATGACTCATTTAACTTGGGG 544
Query 571 TCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCTCATAAC 630
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 545 TCTTGTCAACGACACATACAGAATGGATCTCATCCTTATACATCCGCCGTTTCTCATCAC 604
Query 631 ACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATGGTTTGA 690
||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 605 ACTTGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAGGACTTGGTTTGA 664
Query 691 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGATTTCTA 750
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 665 AGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTGGATTTCTA 724
Query 751 TGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 810
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 725 TGAAAACCATAGACTGTTCACGGAGGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTAC 784
Query 811 AAACCCATAAAGT 823
|||||| ||||||
Sbjct 785 AAACCCGTAAAGT 797
> Ahg357071 jgi|Araly1|357071|fgenesh1_pg.C_scaffold_8000858
Length=375
Score = 593 bits (321), Expect = 6e-169
Identities = 358/376 (95%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 446 ATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGA 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATACCGA 60
Query 506 TCTCTGCCTGAGTTCT-TGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAAC 564
|||||||||||||||| | |||||||||| ||| ||||||| |||||||||||| ||||
Sbjct 61 TCTCTGCCTGAGTTCTCT-CAGGATTCTGAAATTTATGACACAAGTATGACCCATTTAAC 119
Query 565 TTGGGGTCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCT 624
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 TTGGGGTCTTGTTAACGACACATACAGAATGGACCTCATCCTTATACATCCGCCGTTTCT 179
Query 625 CATAACACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATG 684
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 180 CATCACACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAGGACTTG 239
Query 685 GTTTGAAGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGA 744
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GTTTGAAGAGCTTTTTCTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTGGA 299
Query 745 TTTCTATGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACT 804
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TTTCTATGAAAACCATAGACTGTTCACGGAGGAGAGAGTTCACGCCGCCTTCAACAAACT 359
Query 805 TGCTACAAACCCATAA 820
|||||||||||| |||
Sbjct 360 TGCTACAAACCCGTAA 375
> Ahg952004 jgi|Araly1|952004|scaffold_29300001.1
Length=440
Score = 512 bits (277), Expect = 2e-144
Identities = 308/323 (95%), Gaps = 1/323 (0%)
Strand=Plus/Plus
Query 197 TATATATCGAAACTGGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTA 256
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 99 TATATATCGAAACTGGCACAACACATAAAGATTAGGCAAAGAGTTATTGCAACTGCAGTA 158
Query 257 ACCTATATGCGTCGTGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTT 316
|| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 159 ACGTATATGCGTCGCGTTTACACAAGAAAGAGTTTGTCGGAATACGAGCCTCGGCTTGTT 218
Query 317 GCTCCTACATGCTTGTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTT 376
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCTCCCACCTGCTTGTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTT 278
Query 377 CTTGTCTTCTACATGAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGAT 436
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 279 CTTGTCTTCTACATGAAAAAACTTTATGCTGATGAAAAGTTTAGATATGAGATCAAAGAT 338
Query 437 ATTCTGGAAATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCAC 496
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 339 ATTCTGGAAATGGAGATGAAGGTCTTGGAAGCTTTGAACTTCTATCTTGTTGTATTCCAC 398
Query 497 CCATATCGATCTCTGC-CTGAGT 518
||||| |||||||| | ||||||
Sbjct 399 CCATACCGATCTCTTCACTGAGT 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5