BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48790.1
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494942 jgi|Araly1|494942|fgenesh2_kg.8__758__AT5G48790.1 1537 0.0
> Ahg494942 jgi|Araly1|494942|fgenesh2_kg.8__758__AT5G48790.1
Length=975
Score = 1537 bits (832), Expect = 0.0
Identities = 931/979 (95%), Gaps = 5/979 (1%)
Strand=Plus/Plus
Query 72 ATATGTCACCGTCCTTCTCCATCGCCACCACCGTCTCACCGGCTTCTCTAGCCGGGACTC 131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1 ATATGTCACCGTCCTTCTCCATCGCCACCGCCGTCTCACCGGCTTCTCTAGCCGGAACTC 60
Query 132 TGGCCTCGAACTCAAAGAATGTTTTGTGTAGTTTACATTCAAAGAACAATGATAT-TACC 190
||| ||| ||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 61 TGGTCTCTAACTCAAAGAATGTTTTGTGTAGTTTACATTGGAAGAACAATGAT-TGTACC 119
Query 191 AAGACAAATAGGAATCTGAAGTTTAGAGCTTGTTCTGTTTCTGGAGGGTATAACAACAAT 250
||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AAGACGAATAGGAATCTCAAGTTTAGAGCTGGTTCTGTTTCTGGAGGGTATAACAAC--- 176
Query 251 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACGTCGAGCTCATTAATCAGGCCAAA 310
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 177 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACTTCGAGCTCATTAACCAAGCCAAA 236
Query 311 GAAGCAGTGGAAATGGCTTTGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 370
|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAAGCAGTTGAATTGGCAATGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 296
Query 371 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 356
Query 431 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAAGTACAAGA 490
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 357 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAACCACAAGA 416
Query 491 ATTTTCTTCCCGGAAGCAAATGAAGTCAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 550
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 417 ATTTTCTTCCCGGAAGCAAACGAAGTAAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 476
Query 551 TACTTCAAGTTGGACTATCTAACAAAACCATCTCTTTTTGAGGATTTTGGTTTCTTTGAG 610
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 TACTTCAAGTTGGACTATCTAACAAAACCCTCTCTTTTTGAGGATTTTGGTTTCTTTGAG 536
Query 611 AGAGTAAAAATGGCAGATCGAGTGAAGCCAGAAGACGAACTGTTTCTTGTCGCATACCCG 670
|||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 AGAGTAAAAATGTCGGATCGAGTGAAGCCAGAAGACGAATTGTTTCTTGTCGCATACCCA 596
Query 671 TATTTTAATGTCAACGAGATGCTTGTAGTGGAAGAGCTCTACAAGGAAGCTGTTGTGAAC 730
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 597 TATTTTAATGTCAACGAGATGCTCGTAGTGGAAGAGCTATACAAGGAAGCTGTTGTGAAC 656
Query 731 ACTGACCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGTTACTAT 790
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 ACTGATCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGCTACTAT 716
Query 791 CCAAAGTTCTTTTATCCGAAACTGGCTGCACTTACCAAGACACTTCTTCCAAAGATGGAG 850
|||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 717 CCAAAGTTCTTTTACCCGAAACTTGCTGCACTGACCAAGACTCTTCTTCCAAAGATGGAG 776
Query 851 ACAGTGTACTACATCCACAATTTCAAAGGACAGAAAGGAGGTGTACTTTTCAGATGTTAT 910
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 777 ACAGTGTACTACATCCACAATTTCAAGGGACAAAAAGGAGGTGTCCTTTTCAGATGTTAT 836
Query 911 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAAATACATTTGTGTTCATCAGCAA 970
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 837 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAGTTACATATGTGTTCATCAGCAA 896
Query 971 GAATCCATGCCTTCTCTTAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTTT 1030
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 GAATCCATGCCTTCTCTCAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTCT 956
Query 1031 TGTATTGAAACTTTTTCAT 1049
|||| |||||||| |||||
Sbjct 957 TGTAATGAAACTTCTTCAT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43803231633
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5