BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48810.1
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494944 jgi|Araly1|494944|fgenesh2_kg.8__760__AT5G48810.1 1038 0.0
Ahg887889 jgi|Araly1|887889|Al_scaffold_0516_2 302 3e-81
> Ahg494944 jgi|Araly1|494944|fgenesh2_kg.8__760__AT5G48810.1
Length=701
Score = 1038 bits (562), Expect = 0.0
Identities = 661/708 (93%), Gaps = 10/708 (1%)
Strand=Plus/Plus
Query 45 AAGTAGACCAAAAAAGCGGTTGGTGTAAGATCCCAAACTCACAGATTCCCAAATAATAGT 104
||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||| |
Sbjct 1 AAGTAGACCAAAAAAGCGGTTGGTGAAAGATCCCAAA-T--CAGATTCCCAATTAATAAT 57
Query 105 AATAC-TCTTCCTCTTCTCAACTCTCACCAGTCACCAGCAGATCATCGGAGATGGGCGGA 163
| | | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 ACT-CGTCTTCCTCTTCGAAACTCTCACCACTCACCAGCAGATCATCGGAGATGGGCGGA 116
Query 164 GACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGCGC-CAAGGATTGTTG 222
||||| ||||||||||||||| ||||||||||||||||||||||| | | ||||||||||
Sbjct 117 GACGGCAAAGTTTTCACCTTGGCCGAGGTTTCTCAGCACAGTAGCTCTC-AGGATTGTTG 175
Query 223 GATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGG 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCATCCTGGTGG 235
Query 283 TGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGAGGATGTGGG 342
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 236 TGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCAACTGATGATTTCGAGGATGTGGG 295
Query 343 ACATAGTTCGACTGCGAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGC 402
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACATAGTTCGACTGCAAAAGCCATGCTAGATGAGTACTATGTGGGTGATATTGACACAGC 355
Query 403 TACTGTGCCGGTTAAAGCTAAGTTTGTGCCTCCTACGTCGACGAAAGCCGTGGCTACTCA 462
|||||| |||||||||||||||||||| |||||||| |||| || || || || || |||
Sbjct 356 TACTGTCCCGGTTAAAGCTAAGTTTGTACCTCCTACTTCGAAGACAGTCGAGGATAATCA 415
Query 463 GGATAAGAGCTCGGATTTTGTTATTAAGCTCCTTCAGTTCCTTGTTCCACTTCTAATCTT 522
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 416 GGATAAGAGCTCGGATTTTGTCATTAAGCTCCTTCAGTTCCTTGTTCCTCTTCTAATCTT 475
Query 523 AGGCTTGGCTTTCGGCATTCGGTACTACACTAAGACCAAGGCTCCTTCTTCTTGAAAGAT 582
||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||| |||
Sbjct 476 AGGGTTGGCTTTCGGCATCCGGTATTACACTAAGACCAAGACCCCTTCTTCTTGAA-GAT 534
Query 583 TGAATTGTGGCCTAAGTGAATTGCTTGTGTACGACGTGGTTAAACTCTGTCTCTACCTCT 642
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 535 TGAATTGTGGCCTAAGTGAATTGCTTGTGTACGACGTGGTAAAACTCTGTCTCGATCTCT 594
Query 643 GTTTGTCTTGTAAGACATCATTATATTCTCTATTCCAATCAACTGATAGACCTTTGATTT 702
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 595 GTTTGTCTTGTAAGACATCATTATATTCTCTATTGCAATCAACTGAGAGACCTTTGATTT 654
Query 703 TTAAGCCATCTACCTTT-GTTGTCTTATATCAATCAAATCCATTTACA 749
| ||| |||||| |||| |||||||||||| |||||||||||||||||
Sbjct 655 T-AAGTCATCTATCTTTTGTTGTCTTATATAAATCAAATCCATTTACA 701
> Ahg887889 jgi|Araly1|887889|Al_scaffold_0516_2
Length=192
Score = 302 bits (163), Expect = 3e-81
Identities = 176/182 (97%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 155 ATGGGCGGAGACGGAAAAGTTTTCACCTTGTCCGAGGTTTCTCAGCACAGTAGC-GCCAA 213
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1 ATGGGCGGAGACGGCAAAGTTTTCACCTTGGCCGAAGTTTCTCAGCACAGTAGCTCCCAA 60
Query 214 GGATTGTTGGATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCA 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 -GATTGTTGGATCGTCATCGACGGCAAGGTTTATGATGTGACAAAGTTCTTGGATGATCA 119
Query 274 TCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCTGGTGGTGATGAGGTTATCTTGACTTCTACAGGGAAAGATGCGACCGATGATTTCGA 179
Query 334 GG 335
||
Sbjct 180 GG 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27982221078
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5