BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48900.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1 2318 0.0
Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1 1136 0.0
Ahg359757 jgi|Araly1|359757|fgenesh1_pg.C_scaffold_890000001 942 0.0
Ahg930576 jgi|Araly1|930576|scaffold_303033.1 756 0.0
Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036 669 0.0
Ahg496502 jgi|Araly1|496502|fgenesh2_kg.8__2318__AT5G63180.1 259 4e-68
> Ahg494953 jgi|Araly1|494953|fgenesh2_kg.8__769__AT5G48900.1
Length=1517
Score = 2318 bits (1255), Expect = 0.0
Identities = 1448/1537 (94%), Gaps = 29/1537 (2%)
Strand=Plus/Plus
Query 4 tcttttcatcttccttcttcc-t-t-cttcttc--t-tT-AAACACAAAAAACCGACAAA 56
||||||||||||||||||||| | | ||||||| | || |||||||||| |||||||||
Sbjct 1 TCTTTTCATCTTCCTTCTTCCTTCTCCTTCTTCTTTGTTCAAACACAAAAGACCGACAAA 60
Query 57 AGCCTCTGTCTCGGACAGAGACAAAGAAACAGAACAGAGCAAGAACAATGGCTGTTACAC 116
||||||||||| |||| ||| |||||||||||||| || |||| |||||||| ||||||
Sbjct 61 AGCCTCTGTCTTAGACAAAGATAAAGAAACAGAACAAAGAAAGAGCAATGGCTATTACAC 120
Query 117 AAATACTTGTCGTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTCACTGGCGTCGATT 176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTCACTGGCGTCGATT 180
Query 177 CCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCAGAGGAAGTAGCTG 236
|||||| | || | | || | ||||||||||||||||||||||||||||
Sbjct 181 CCACAA-G-----TG--A-A---CA-G-----GCAGTTGAGAATCCAGAGGAAGTAGCTG 222
Query 237 CCATGGTGGACATGAGCATTCGAAACAGCACAGCGA-GAAGAAGATTAGGATACTTCTCA 295
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 223 CCATGGTGGACATGAGCATTCGAAACAGCACAG-AACGAAGAAAATTAGGATACTTCTCA 281
Query 296 TGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTGACCGGAGATGGCAATCCCGG 355
|| |||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct 282 TGTTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAGATGGCAATCTCGG 341
Query 356 CGAAAA-CATCTAGCCAATTGCGCAATCGGGTTCGGTCGCAATGCAATCGGCGGTAGAGA 414
|||||| | | ||||||||||||||||||| |||||||| || |||||||| || ||||
Sbjct 342 CGAAAAGC-TTTAGCCAATTGCGCAATCGGATTCGGTCGAAACGCAATCGGAGGCCGAGA 400
Query 415 CGGTCGTTACTACGTAGTGAGTGATCCAAACGACGATAACCCGGTTAACCCTAAACCGGG 474
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 401 CGGTCGTTACTACGTCGTAAGCGACCCAAACGACGATAACCCGGTTAACCCTAAACCGGG 460
Query 475 AACATTACGTCACGCAGTAATTCAAGAAGAACCATTATGGATCGTCTTTAAACGTGACAT 534
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 461 AACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTCTTTAAACGTGACAT 520
Query 535 GGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGG 580
Query 595 CGTCAACGTTCACATAGCTAATGGTGCATGCATCACGATTCAGTTCGTGACTAACATTAT 654
|| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 581 TGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTCGTGACTAACATTAT 640
Query 655 CATTCATGGGATACATATTCATGATTGTAGACCAACTGGTAACGCTATGGTTAGAAGCTC 714
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CATTCATGGGATTCATATTCATGATTGTAGACCAACTGGTAACGCTATGGTTAGAAGCTC 700
Query 715 TCCTTCGCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTC 774
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TCCTTCACATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTC 760
Query 775 GAGTCATATTTGGATTGATCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 GAGTCATATTTGGATTGATCATAATTCGCTTTCGAATTGTGCTGATGGGCTTATTGATGC 820
Query 835 TGTTATGGCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TGTTATGGCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGT 880
Query 895 TATGTTATTGGGACATAGTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATAGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 881 TATGTTATTGGGACATAGTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATTGC 940
Query 955 TTATAATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTT 1014
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 941 TTATAATCATTTCGGTGAAGGTCTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTT 1000
Query 1015 TCATGTAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAG 1074
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1001 TCATGTAGTGAACAATGACTATACGCATTGGGAAATGTATGCAATCGGTGGCAGTGCGAG 1060
Query 1075 TCCTACCATTAACAGCCAAGGAAATAGATATCTCGCCCCAAGAAACCGGTTTGCTAAAGA 1134
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 1061 TCCTACCATTAACAGCCAAGGAAACAGATATCTCGCCCCGAGAAACCGGTTTGCGAAAGA 1120
Query 1135 GGTGACAAAGAGAGACTATGCAGGGCAATGGCAATGGAGGCATTGGAATTGGAGATCAGA 1194
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GGTAACAAAGAGAGACTATGCAGGGCAATGGCAATGGAGGCATTGGAATTGGAGATCAGA 1180
Query 1195 AGGAGATCtttttttAAACGGAGCTTTCTTCACACGTTCTGGATCAGGTCTTGGAGCTAG 1254
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1181 AGGAGATCTTTTCTTAAACGGAGCATTCTTCACACGTTCTGGATCAGGACTTGGAGCGAG 1240
Query 1255 CTACGCTAGAGCTTCAAGTTTAGCAGCCAAATCATCATCTCTTGTTGGCGTCATTACCTA 1314
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1241 CTACGCTAGAGCTTCAAGTTTAGCAGCCAAGTCATCATCACTTGTTGGCGTCATCACCTA 1300
Query 1315 CAATGCCGGTGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAATAGTTACTAAAGTCTAT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1301 CAATGCCGGTGCTCTTAATTGCAGAGGTGGTCGCCGGTGTTAATAGTTACTAATTTTTAT 1360
Query 1375 CTTCTTTTGGTTTCTTGCATTATACATGGCAATAGCACTATTGAATGTCGAGGCTTGATT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 CTTCTTTTGGTTTCTTGCATTATACATGGCAATAGCACTATTGAATGTCGAGGCTTGATT 1420
Query 1435 TAAAATTGCCTCAACTGTATTATAAAGTTGTAATGATTTGTTTCACCGCCAATTATTGAT 1494
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TAAAACTGTCTCAACTGTACTATAAAGTTGTAATGATTTGTTTCACCGCCAATTATTGAT 1480
Query 1495 GTATCTATAAAAGCAAACAAAGTTGGAACTCTCCCTT 1531
|||||||||||||||||||||||||||||||| ||||
Sbjct 1481 GTATCTATAAAAGCAAACAAAGTTGGAACTCTTCCTT 1517
> Ahg478021 jgi|Araly1|478021|fgenesh2_kg.3__722__AT3G07010.1
Length=1685
Score = 1136 bits (615), Expect = 0.0
Identities = 1063/1277 (83%), Gaps = 39/1277 (3%)
Strand=Plus/Plus
Query 100 AACAATGGCTGTTACACAAATACTT-GTCGTCTTTGCTTCTGCATTACTCCTATCAATGT 158
||||||||||| | |||||| |||| || |||||||||||||||| || ||| ||| |
Sbjct 175 AACAATGGCTG-T-CACAAA-ACTTATTC-TCTTTGCTTCTGCATTGCTTCTAACAA-CT 229
Query 159 -TCTTCACT-GGCGTCGATTCCA-CAAGGTCTAATGAAACATGGCATGAACATGCAGTTG 215
|||| | | ||||| ||| || | ||||| ||||||||||||||||||||||||||||
Sbjct 230 CTCTTTA-TCGGCGTTAATT-CATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTG 287
Query 216 AGAATCCAGAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGCGAGAA 275
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 288 AGAACCCAGACGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGC 347
Query 276 GAAGATTAGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTG 335
|||||||||| |||||||| ||| | ||||| ||||||||||| ||||| |||||||| |
Sbjct 348 GAAGATTAGGTTACTTCTCCTGCGCCACCGGCAATCCAATCGACGATTGCTGGCGTTGCG 407
Query 336 ACCGGAGATGGCAA-TCCCGGCGAAAACATCTAGCCAATTGCGCAATCGGGTTCGGTCGC 394
|||| | |||||| ||| | || |||| | ||||| ||||| ||||||| || || |||
Sbjct 408 ACCGCAAATGGCAGCTCC-GTCGCAAACGTTTAGCCGATTGCTCAATCGGATTTGGCCGC 466
Query 395 AATGCAATCGGCGGTAGAGACGGTCGTTACTACGTAGTGAGTGATCCAA-ACGACGATAA 453
|| |||||||| || | |||||||||| |||||| || | || ||| | ||||| ||
Sbjct 467 AACGCAATCGGAGGCCGCGACGGTCGTTTCTACGTCGTAACCGACCCAGGA-GACGACAA 525
Query 454 CCCGGTTAACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCATTATG 513
|||||||| || | |||||||||| | |||||||| || || || || || ||| | ||
Sbjct 526 TCCGGTTAATCCGACACCGGGAACACTCCGTCACGCCGTGATCCAGGACGAGCCACTCTG 585
Query 514 GATCGTCTTTAAACGTGACATGGTCATAACATTAAAAG-AAGAACTAATCATGAACAGTT 572
|||| |||| ||||| |||||||||||||| || || | |||| || ||||||||||| |
Sbjct 586 GATCATCTTCAAACGCGACATGGTCATAACCTTGAA-GCAAGAGCTGATCATGAACAGCT 644
Query 573 TCAAAACAATCGATGGTCGTGGCGTCAACGTTCACATAGCTAATGGTGCATG-CATCACG 631
||||||| || ||||||||||| ||||| ||||||||||||||||| || || | |||||
Sbjct 645 TCAAAACCATTGATGGTCGTGGTGTCAATGTTCACATAGCTAATGGAGCTTGTC-TCACG 703
Query 632 ATTCAGTTCGTGACTAACATTATCATTCATGGGATACATATTCATGATTGTAG-ACCAAC 690
||||||| ||| || |||||||| | |||||||| ||||||||||| ||| | ||| ||
Sbjct 704 ATTCAGTACGTTACGAACATTATTGTCCATGGGATTCATATTCATGACTGT-GTACCTAC 762
Query 691 TGGTAACGCTATGGTTAGAAGCTCTCCTTCGCATTATGG-TTGGAGAACTATGGCTGATG 749
||||| |||||||||||||||||||| ||||||||||| || ||| | ||||||||||
Sbjct 763 GGGTAATGCTATGGTTAGAAGCTCTCCGTCGCATTATGGGTTT-AGATCGATGGCTGATG 821
Query 750 GAGATGGGATTTCGATTTTCGGGTCGAGTCATATTTGGATTGATCATAATTCGCTTTCGA 809
| || | || |||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 822 GTGACGCCATCTCGATTTTTGGGTCGAGTCATATTTGGATTGATCACAATTCGCTTTCTA 881
Query 810 ATTGTGCTGATGGGCTTATTGATGCTGTTATG-GCTTCTACTGCTATTACTATCTCCAAT 868
||||||||||||||||| |||| ||||||||| | ||| || || |||||| |||| ||
Sbjct 882 ATTGTGCTGATGGGCTTGTTGACGCTGTTATGAG-TTCCACCGCCATTACTGTCTCAAAC 940
Query 869 AATTACTTCACACACCACAATGAGGTTATGTTATTGGGACATAGTGA-TACCTATACAAG 927
|||| |||||| || ||||||||||||||||| ||||| || ||||| | | || |||||
Sbjct 941 AATTTCTTCACCCATCACAATGAGGTTATGTTGTTGGGGCACAGTGACT-CATACACAAG 999
Query 928 GGATAAGGTTATGCAAGTTACAATAGCTTATAATCATTTTGGTGAAGGTCTTATTC-AGA 986
|| ||||| |||||||| ||||| ||||| || ||||||||||||||| ||| || |||
Sbjct 1000 AGACAAGGTGATGCAAGTCACAATTGCTTACAACCATTTTGGTGAAGGT-TTAATCCAGA 1058
Query 987 GAATGCCGAGGTGTAGGCATGGATATTTTCATGTAGTTAACAATGACTATACACATTGGG 1046
||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1059 GAATGCCAAGGTGTAGGCATGGATATTTCCATGTAGTTAACAATGACTACACGCATTGGG 1118
Query 1047 AAATGTATGCGATCGGTGGCAGTGCGAGTCCTACCATTAACAGCCAAGGAAATAGATATC 1106
|||||||||| || ||||| ||||| ||||| ||||| ||||| || || ||| ||| ||
Sbjct 1119 AAATGTATGCAATTGGTGGTAGTGCTAGTCCCACCATCAACAGTCAGGGCAATCGATTTC 1178
Query 1107 TCGCCCCAAGAAACCGGTTTGCTAAAGAGGTGACAAAGAGAGACTATGCAGG-GCAATGG 1165
| ||||||| ||||| |||||||| |||||||| |||||||| || |||| | ||| |
Sbjct 1179 TTGCCCCAACAAACCCATTTGCTAAGGAGGTGACTAAGAGAGAGTACACAGGAG-AATCG 1237
Query 1166 CAATGGAGGCATTGGAATTGGAGATCAGAAGGAGATCtttttttAAACGGAGC-TTTCTT 1224
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 1238 AAATGGAAGCACTGGAATTGGAGATCAGAAGGAGATCTTTTCTTAAACGGAGCATTT-TT 1296
Query 1225 CACACGTTCTGGATCAGGT-CTTGGAGCTAGCTACGCTAGAGCTTCAAGTTTAGCAGCCA 1283
||||||||||||| | || || ||| | | ||| || |||||||| |||||| ||||||
Sbjct 1297 CACACGTTCTGGAGCTGGAGCT-GGATCCAACTATGCCAGAGCTTCGAGTTTATCAGCCA 1355
Query 1284 AATCATCATCTCTTGTTGGCGTCATTACCTACAATGC-C-GGTGCTCTTAATTGCAGAGG 1341
||||||| || || |||||| ||| |||| | | | | ||||||||||| |||||||
Sbjct 1356 AATCATCCTCACTCGTTGGCACCATGACCT-CT-TACTCAGGTGCTCTTAACTGCAGAGC 1413
Query 1342 TGGTCGCCGGTGTTAAT 1358
|||||| || |||||||
Sbjct 1414 TGGTCGTCGATGTTAAT 1430
> Ahg359757 jgi|Araly1|359757|fgenesh1_pg.C_scaffold_890000001
Length=600
Score = 942 bits (510), Expect = 0.0
Identities = 573/603 (95%), Gaps = 6/603 (1%)
Strand=Plus/Plus
Query 104 ATGGCTGTTACACAAATACTTGTCGTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTC 163
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTATTACACAAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTC 60
Query 164 ACTGGCGTCGATTCCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGGCGTCGATTCCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCA 120
Query 224 GAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGCGA-GAAGAAGATT 282
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 GAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGA-ACGAAGAAGATT 179
Query 283 AGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTGACCGGAG 342
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 180 AGGTTACTTCTCATGCTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAG 239
Query 343 ATGGCAATCCCGGCGAAAA-CATCTAGCCAATTGCGCAATCGGGTTCGGTCGCAATGCAA 401
||||||||| ||||||||| | | |||||||||||||||| || ||||||||||| ||||
Sbjct 240 ATGGCAATCTCGGCGAAAAGCTT-TAGCCAATTGCGCAATTGGATTCGGTCGCAACGCAA 298
Query 402 TCGGCGGTAGAGACGGTCGTTACTACGTAGT-GAGTGATCCAAACGACGATAACCCGGTT 460
|||| || |||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 299 TCGGTGGCCGAGACGGTCGTTACTACGTAGTAGAC-GACCCAAACGACGATAACCCGGTT 357
Query 461 AACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCATTATGGATCGTC 520
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 358 AACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTC 417
Query 521 TTTAAACGTGACATGGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTTAAACGTGACATGGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACA 477
Query 581 ATCGATGGTCGTGGCGTCAACGTTCACATAGCTAATGGTGCATGCATCACGATTCAGTTC 640
|||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||
Sbjct 478 ATCGATGGTCGTGGTGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTC 537
Query 641 GTGACTAACATTATCATTCATGGGATACATATTCATGATTGTAGACCAACTGGTAACGCT 700
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GTGACTAACATTATCATTCATGGGATTCATATTCATGATTGTAGACCAACTGGTAACGCT 597
Query 701 ATG 703
|||
Sbjct 598 ATG 600
> Ahg930576 jgi|Araly1|930576|scaffold_303033.1
Length=1369
Score = 756 bits (409), Expect = 0.0
Identities = 831/1030 (81%), Gaps = 48/1030 (5%)
Strand=Plus/Plus
Query 195 CATGGCATGAACATGCAGTTGAGAATCCAGAGGAAGTAGCTGCCATGGTGGACATGAGC- 253
||||| ||||||| || ||| | || ||||| ||||||||||| ||||| || |||| |
Sbjct 187 CATGGAATGAACACGCCGTTAAAAACCCAGAAGAAGTAGCTGCAATGGTCGATATGA-CG 245
Query 254 ATTCGA-AACAGCAC--AGCGAGAAGAAGATTAGGATACTTCTCATGCTCAACCGGAAAT 310
||| | ||||| || |||| | || || ||||||| |||||||||| | ||||||||
Sbjct 246 ATT-AAGAACAGTACGGAGCG-G-AGGAGGTTAGGATTCTTCTCATGCGCCACCGGAAAC 302
Query 311 CCAATCGATGATTGTTGGCGTTGTGACCGGAGA-TGGCAATC-CCGGCGAAAACATCTAG 368
|||||||| || |||||| | ||||| |||| | |||| ||| ||| ||||| | ||| |
Sbjct 303 CCAATCGACGACTGTTGGAGATGTGATCGGA-ACTGGC-ATCTCCGACGAAAGCGTCTCG 360
Query 369 CCAATTGCGCAATCGGGTTCGGTCGCAATGCAATCGGCGGTA-GAGACGGTCGTTACTAC 427
| |||||||||||||| |||||||| || ||| |||| || | |||| ||||||||||||
Sbjct 361 CGAATTGCGCAATCGGATTCGGTCGTAACGCAGTCGGAGG-ACGAGATGGTCGTTACTAC 419
Query 428 GTAGTGAGTGATCCAAAC-GACGATAACCCGGTTAACCCTA-AACCGGGAACATTACGTC 485
|| || | ||||| | | ||| | || ||||||| || | ||||||||| | ||||
Sbjct 420 GTCGTCACAGATCC-ATCAGACCACGACGCGGTTAATCC-ACGACCGGGAACGCTCCGTC 477
Query 486 ACGCAGTAATTCAAGA-AGAACCATTATGGATCGTCTTTAAACGTGACATGGTCATAACA 544
|||| || |||||||| | || |||||||||||||| ||||| |||||||| || ||
Sbjct 478 ACGCCGTGATTCAAGACCG-TCCGTTATGGATCGTCTTCAAACGCGACATGGTGATTAC- 535
Query 545 T-TAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGGCGTCAACGT 603
| ||| |||| ||||||||||| || |||||||| |||||||| | ||||| |||||
Sbjct 536 TCTAACTCAAGAGCTAATCATGAATAGCTTCAAAACGATCGATGGAAGAGGCGTGAACGT 595
Query 604 T-CACATAGCTA-ATGGTGCATGCATCACGATTCAGTTCGTGACTAACATTATCATTCAT 661
| || || || | ||||| || |||||||| ||||| ||||| || |||||||| |||
Sbjct 596 TGCA-ATCGC-AGGCGGTGCTTGTATCACGATCCAGTTTGTGACGAATATTATCATCCAT 653
Query 662 GGGA-TACATATTCATGATTGTAGACCAACTGGTAACGCTATGGTTAGAAGCTCTCCTTC 720
|||| || |||| |||||||||||| |||||||| ||||||||| ||||||| || ||
Sbjct 654 GGGATTA-ATATACATGATTGTAGAAGGACTGGTAATGCTATGGTTCGAAGCTCGCCGTC 712
Query 721 GCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTCGAGTCA 780
||||||||| ||||| |||||||| ||||| |||| || |||||||| || ||||||||
Sbjct 713 GCATTATGGGTGGAGGACTATGGCGGATGGTGATGCTATATCGATTTTTGGATCGAGTCA 772
Query 781 TATTTGGATTGATCATAATTCGCTT-TCGAATTGTGCTGATGGGCTT-ATTGATGCTG-T 837
||||||||||||||||||||| || || |||||||||||||| || |||||||| | |
Sbjct 773 TATTTGGATTGATCATAATTCT-TTGTCTAATTGTGCTGATGGA-TTGATTGATGC-GAT 829
Query 838 TATGGCTTCTACTGCTATTACTATCTCCAATAATTACT-TCACACACCACAATGAGGTTA 896
||||| |||||||||||||||||||||||||| || | | || |||||||| |||||||
Sbjct 830 TATGGGATCTACTGCTATTACTATCTCCAATAACTA-TATGACTCACCACAACGAGGTTA 888
Query 897 TGTT-ATTGGGACATAGTGATACCTATACAAGGGATAAGGTT-ATGCAAGTTACAATAGC 954
|||| || ||| ||||||||| | || || || || ||| || |||||||| ||||||||
Sbjct 889 TGTTGATGGGG-CATAGTGATTCATACACTAGAGACAAG-TTGATGCAAGTGACAATAGC 946
Query 955 TTATAATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTT 1014
||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct 947 ATATAACCATTTTGGGGAAGGGCTTATACAGAGAATGCCGAGGTGTAGACATGGTTATTT 1006
Query 1015 TCATGTAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAG 1074
||||| || |||||||| ||||| ||||||| ||||||||| || ||||| ||||| |
Sbjct 1007 CCATGTTGTAAACAATGATTATACTCATTGGGTAATGTATGCAATTGGTGGAAGTGCTAA 1066
Query 1075 TCCTACCATTAACAGCCAAGGAAATAGATATC-TCGCCCCAAGAAACCGGTTTGCTAAAG 1133
|||||||| || |||||||| ||| | | || | ||||| |||||| ||||| ||||
Sbjct 1067 CCCTACCATCAATAGCCAAGGCAATCGGT-TCCTTGCCCCGGGAAACCCTTTTGCCAAAG 1125
Query 1134 AGGTGACAAAGAGAG-AC-TATGCAGGGCAATG-GCAATGGAGGCATTGGAATTGGAGAT 1190
||||||||||||| | | | | || ||||| | | |||||| ||| ||||| |||||||
Sbjct 1126 AGGTGACAAAGAGGGTAGGT-T-CATGGCAAGGAG-AATGGAAGCAATGGAACTGGAGAT 1182
Query 1191 CAGAAGGAGA 1200
|| | |||||
Sbjct 1183 CACAGGGAGA 1192
> Ahg333008 jgi|Araly1|333008|fgenesh1_pm.C_scaffold_9000036
Length=1257
Score = 669 bits (362), Expect = 0.0
Identities = 819/1035 (79%), Gaps = 50/1035 (5%)
Strand=Plus/Plus
Query 196 ATGGCATGAACATGCAGTTGAGA-ATCCAGAGGAAGTAGCTGCCA-TGGTGGACATGAGC 253
|||||||||||| || ||| | | | ||||| ||| |||| | || |||| || |||||
Sbjct 93 ATGGCATGAACACGCCGTT-AAAGACCCAGAAGAAATAGCAG-CACTGGTCGATATGAGT 150
Query 254 ATTCGAAACAGCAC--AGCG-AGAAGAAGATTAGGATAC-T-T-CTCATGCTCAACCGGA 307
|| || ||||| || | || || | ||| |||| | | | | ||| ||| ||| |||
Sbjct 151 ATACGTAACAGTACGTATCGTAG-A-AAG-CTAGGGTTCTTCTCCTCTTGCGAAACTGGA 207
Query 308 AATCCAATCGATGATTGTTGGCGTTGTGACCGGAGATGGCAATC-CCGGCGAAAAC-ATC 365
|| |||||||||||||||||||| || || | ||||| ||| |||| |||||| ||
Sbjct 208 AACCCAATCGATGATTGTTGGCGATGCGATAAAAAATGGC-ATCGCCGGAGAAAACGAT- 265
Query 366 TAGCCAATTGCGCAATCGGGTTCGGTCGCAATGCAATCGGCGGTAGAGACGGTCGTTACT 425
|||| |||||| || || ||||| || || ||| | || || | || || |||||||
Sbjct 266 TAGCGGGTTGCGCGATTGGTTTCGGACGTAACGCAGTTGGAGGCCGTGATGGACGTTACT 325
Query 426 ACGTAGTGAGTGATCCAAAC-GA-CGATAACCCGGTTAACCCTAAACCGGGAACATTAC- 482
|| | || | |||||| | | || | || ||||||||||||| ||||| || ||| | |
Sbjct 326 ACATTGTTACTGATCC-ATCTGATC-ATGACCCGGTTAACCCAAAACCCGGTACACTCCG 383
Query 483 GTCACGCAGTAATTCAAGAAGAACCATTATGGATCGTCTTTAAACGTGACATGGTCATAA 542
|| |||| || || ||||| ||||| |||||||||| |||||||||||||||||||| |
Sbjct 384 GT-ACGCTGTGATACAAGACGAACCGCTATGGATCGTATTTAAACGTGACATGGTCATTA 442
Query 543 CATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACAATCGATGGTCGTGGCGTCAACG 602
| |||| |||||||||||||||| || |||||||| || |||||||||||||| ||||
Sbjct 443 CTTTAAGCCAAGAACTAATCATGAATAGCTTCAAAACGATTGATGGTCGTGGCGTGAACG 502
Query 603 TTCACATAGCTAATGGTGCATGCATCACGATTCAGTTCGTGACTAACATTATCATTCATG 662
| || |||||| ||||||||| ||||||||||||| ||| || || |||||||| ||||
Sbjct 503 TACATATAGCTGGTGGTGCATGTATCACGATTCAGTACGTTACGAATATTATCATCCATG 562
Query 663 GGA-TACATATTCATGATTGT-AGACCAACTGGTAACGCTATGGTTAGAAGCTCTC-CTT 719
||| || ||||||| |||||| || | ||||||||||||||||||| | || | ||
Sbjct 563 GGATTA-ATATTCACGATTGTAAG-CGAACTGGTAACGCTATGGTTCGGAG-T-TCGGAG 618
Query 720 CG-CATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCGATTTTCGGGTCGAGT 778
| ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||
Sbjct 619 AGTCATTATGGTTGGAGAACTATGGCTGATGGTGATGGGATATCGATTTTTGGATCGAGT 678
Query 779 CATATTTGGATTGATCATAATTCGCTTTCGAATTGTGCTGATGGGCTT-ATTGATGCTGT 837
||||||||||||||||||||||| |||||||||||||||||||| || || ||||| |
Sbjct 679 CATATTTGGATTGATCATAATTCTCTTTCGAATTGTGCTGATGGA-TTGATAGATGCAAT 737
Query 838 TATGGCTTCTACTGCTATTACTATCTCCAATAATTA-CTTCACACACCACAATGAGGTTA 896
||||| |||||||||||||| ||||| |||||||| || ||| ||||||||||||| ||
Sbjct 738 TATGGGATCTACTGCTATTACCATCTCTAATAATTATCT-CACTCACCACAATGAGGCTA 796
Query 897 TGTTATTGGGACATAGTGATACCTATACAAGGGATAAGGTTATGCAAGTTACAATAGCTT 956
| || ||||| |||| ||| | || || || || || | |||||||| || || || |
Sbjct 797 TTTTGTTGGGGCATACCGATTCATACACCAGAGACAAAATGATGCAAGTAACCATTGCAT 856
Query 957 ATAATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTTTC 1016
| || |||||||| || |||||| | ||||||||||| ||||| ||||||||||| || |
Sbjct 857 ACAACCATTTTGGAGAGGGTCTTGTACAGAGAATGCCAAGGTGCAGGCATGGATACTTCC 916
Query 1017 ATGTAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAGTC 1076
||||||| ||||| || || || || |||| ||||||||| || ||||| ||||| | ||
Sbjct 917 ATGTAGTAAACAACGATTACACTCACTGGGTAATGTATGCAATTGGTGGAAGTGCTAATC 976
Query 1077 CTACCATTAACAGCCAAGGAAATAGATATC-TCGCCCCAAGAAACCGGTTT-GCTAAAGA 1134
||||||| || || |||||||| | | || | ||||| ||||||| ||| ||||| ||
Sbjct 977 CTACCATCAATAGTCAAGGAAACCGGT-TCCTTGCCCCGGGAAACCG-TTTCGCTAAGGA 1034
Query 1135 GGTGAC-AAA-GAG-AGACTATGCAGGGCAATG-GCAATGGAGGCA-TTGGAATTGGAGA 1189
|||||| ||| | | || | |||||| || | | |||||| || |||||| ||||||
Sbjct 1035 GGTGACGAAACGGGTAGG-T--GCAGGGGAAGGAG-AATGGAA-CAATTGGAACTGGAGA 1089
Query 1190 TCAGAAGGAGATCtt 1204
|| ||||||| |||
Sbjct 1090 TCCCAAGGAGA-CTT 1103
> Ahg496502 jgi|Araly1|496502|fgenesh2_kg.8__2318__AT5G63180.1
Length=1469
Score = 259 bits (140), Expect = 4e-68
Identities = 707/971 (73%), Gaps = 78/971 (8%)
Strand=Plus/Plus
Query 272 AGAA-GAAGATTAGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCG 330
|||| |||| |||| | |||||| ||| || || |||||||| ||||||||||||||
Sbjct 214 AGAAGGAAG-CTAGGTTTCTTCTCGTGCGGGACTGGTAATCCAATAGATGATTGTTGGCG 272
Query 331 TTGTGACCGGA-GA-TGGCA-ATCCCGGCGAAAACATCTAGCCAATTGCGCAATCGGGTT 387
|| || | | || ||| | | | ||||||| |||||| |||||| ||||| ||
Sbjct 273 ATGCGA--GAAGGATTGGGAGA-ACAACCGAAAACGGCTAGCCGATTGCGGTATCGGTTT 329
Query 388 CGGTC-GCAATGCAATCGGCGGTAGAGACGGTCGTTA-CTACGTAGTGA-GTGATCC--- 441
|| | || || || || ||| | || ||| | | |||||| || | | |||||
Sbjct 330 TGG-CAAAAACGCTATTGGTGGTCGTGATGGT-GAAATCTACGTGGTCACG-GATCCAGG 386
Query 442 AAACGACGATAACCCGGTTAACCCTAAACCGGGAACATTACG-TCACGCAGTAATTCAAG 500
|||||||||| || || || |||||||| |||||| || | | |||| ||||||||||
Sbjct 387 AAACGACGAT---CCAGTAAATCCTAAACCCGGAACACTAAGAT-ACGCGGTAATTCAAG 442
Query 501 AAGAACCATTATGGATCGTCTTTAAACGTGACATGGTC-ATAAC-ATTAAAAGAAGAACT 558
| ||||| |||||||| | ||||| || ||||| | | || | | |||||||||||||
Sbjct 443 ATGAACCGCTATGGATCATTTTTAAGCGAGACAT-GACGAT-CCAACTAAAAGAAGAACT 500
Query 559 AATCATGAACAGTTTCAAAACAATCGATGGTCGTGGCGTCA-ACGTTCACATAGCTAATG 617
|||||||| ||||||||| | || || || || | || || | ||||| || |
Sbjct 501 CATCATGAATTCTTTCAAAACCCTAGACGGACGAGGAG-CATCCG-T-ACATATCT-CCG 556
Query 618 GT--G-CATGCATCACGATTCAGT-TCGTGACTAACATTATCATTCATGGGATACATATT 673
|| | |||| || || || || | | || || ||||| ||||| ||||| |||| ||
Sbjct 557 GTGGGCCATGTATAACCATACAATAT-GTAACCAACATCATCATCCATGGTTTACACATA 615
Query 674 CATGATTGTAGACCAA-CTGGTAACGC-TATGGTTA-GAAG-CTCTCCTTCGCATTATGG 729
||||| || | | ||| ||| || | || | || | | ||| || |||||| ||
Sbjct 616 CATGACTGCA-AGCAAGGTGGAAATACTTA-CG-TACG-TGACTCACCAGAGCATTACGG 671
Query 730 TTGGAGAAC--TATGGCTGATGGAGATGG-GATTTCGATTTTCGGGT-CGAGTCATATTT 785
| ||||| ||| | || || || || | | || || ||| ||| |||||| | |
Sbjct 672 ATATAGAACGGTAT--CGGACGGTGACGGTG-TGTCCATCTTC-GGTGGGAGTCACGTGT 727
Query 786 GGATTGATCATAATTCGCTTTCGAATTG-TGCTGATGGGCTT-ATTGATGCTG-TT-ATG 841
|| |||||||| ||||| |||||||| | |||||| || || ||||| | || ||
Sbjct 728 GGGTTGATCATTGCTCGCTCTCGAATTGCAAC-GATGGG-TTGATCGATGC-GATTCGTG 784
Query 842 GCTTCTACTGCTATTACTATCTCCAATAATTACTTCACACACCACAATGAGGTTATGTTA 901
| || || ||||| || ||||| || ||||| || || || || ||| |||||||||||
Sbjct 785 G-ATCAACGGCTATAACGATCTCTAACAATTATTTGACGCATCATAATAAGGTTATGTTA 843
Query 902 TTGGGACATAGTGATACCTA--TACAAGGGATAAGGTTATGCAAGTTACAATAGCTTATA 959
|||||||| |||||||| || |||| || ||| |||||||| || || |||| ||
Sbjct 844 TTGGGACACAGTGATACGTACGAACAA--GACAAGAACATGCAAGTCACTATCGCTTTTA 901
Query 960 ATCATTTTGGTGAAGGTCTTATTCAGAGAATGCCGAGGTGTAGGCATGGATATTTTCATG 1019
| |||||||| ||||| || | || |||||||| |||||||| ||||||||||| ||||
Sbjct 902 ACCATTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTCCATG 961
Query 1020 TAGTTAACAATGACTATACACATTGGGAAATGTATGCGATCGGTGGCAGTGCGAGTCCTA 1079
| || |||||||||||||||||||||||||||||||| || || || ||||| | |||||
Sbjct 962 TGGTGAACAATGACTATACACATTGGGAAATGTATGCAATTGGAGGAAGTGCTAATCCTA 1021
Query 1080 CCATTAACAGC-CAAGGAAATAGATATCTCGCCCCAAGAA-AC-CGGTTT-GCTAAAGAG 1135
| || ||| | ||||| || | | ||| ||||| || || | | | || ||||||
Sbjct 1022 CAATCAACT-CTCAAGGCAACCGTTTTCTTGCCCCT-GATGACTCA-TCTAGC-AAAGAG 1077
Query 1136 GTGACAAAG-A-GAG-ACTATGCAGGGCAATGGCAATGGAGGCATTGGAATTGGAGATCA 1192
|| |||||| | ||| | | || | || | ||||||| ||||||||||||||||
Sbjct 1078 GTAACAAAGCACGAGGA-TGCGCCCGAAAACG--AATGGAGAAATTGGAATTGGAGATCC 1134
Query 1193 GAAGGAGATCt 1203
|||||||||||
Sbjct 1135 GAAGGAGATCT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5