BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48930.1 Length=1727 Score E Sequences producing significant alignments: (Bits) Value Ahg924173 jgi|Araly1|924173|scaffold_105454.1 1812 0.0 > Ahg924173 jgi|Araly1|924173|scaffold_105454.1 Length=1342 Score = 1812 bits (981), Expect = 0.0 Identities = 1204/1315 (92%), Gaps = 2/1315 (0%) Strand=Plus/Plus Query 70 TATGAAAATTAACATCAGAGATTCCACCATGGTCCGGCCTGCCACCGAGACACCAATCAC 129 |||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| Sbjct 20 TATGAAAATTAACATCCGAGATTCCACCATGGTCCGGCCTGCCGCCGAGACGCCTATCAC 79 Query 130 TAATCTTTGGAACTCCAACGTCGACCTTGTCATCCCCAGATTCCATACCCCTAGTGTCTA 189 ||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 80 TAATCTTTGGAACTCCAACGTTGACCTTGTTATCCCCAGATTCCACACCCCCAGTGTCTA 139 Query 190 CTTCTACAGACCCACCGGCGCTTCCAATTTCTTTGACCCTCAGGTCATGAAGGAAGCTCT 249 |||||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||||| Sbjct 140 CTTCTACAGACCCACCGGTGCCTCCAATTTCTTCGACCCTCAGATCATGAAGGACGCTCT 199 Query 250 TTCCAAAGCCCTTGTCCCTTTTTACCCTATGGCTGGTCGCTTGAAGAGAGACGATGATGG 309 ||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 200 CTCCAAGGCCCTCGTCCCCTTTTACCCCATGGCCGGTCGCTTGAAGAGAGACGATGATGG 259 Query 310 TCGTATTGAGATCGATTGTAACGGTGCTGGTGTTCTCTTCGTTGTGGCTGATACTCCTTC 369 |||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||| || Sbjct 260 TCGTATCGAGATTGATTGCAACGGCGCCGGTGTTCTCTTCGTCGTTGCCGATACTCCCTC 319 Query 370 TGTTATCGATGATTTTGGTGATTTTGCTCCTACCCTTAATCTCCGTCAGCTTATTCCCGA 429 ||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct 320 TGTCATCGATGATTTTGGTGACTTCGCTCCTACCCTCAATCTCCGCCAGCTTATTCCCGA 379 Query 430 AGTTGATCACTCCGCTGGCATTCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACTTTCTT 489 |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 380 TGTTGATCACTCCGCCGGCATCCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACCTTCTT 439 Query 490 TAAATGTGGGGGAGCTTCACTTGGGGTTGGGATGCAACATCACGCGGCAGATGGTTTCTC 549 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 440 TAAATGCGGGGGAGCTTCCCTTGGGGTTGGTATGCAACACCACGCTGCAGATGGTTTCTC 499 Query 550 TGGTCTTCATTTTATCAACACATGGTCTGATATGGCTCGTGGTCTTGACCTAACCATTCC 609 |||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 500 TGGTCTCCACTTTATCAACACATGGTCTGATATGGCCCGTGGTCTTGACCTTACCATTCC 559 Query 610 ACCTTTCATTGATCGAACACTCCTCCGAGCTAGGGACCCGCCACAGCCTGCTTTTCATCA 669 ||| |||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| Sbjct 560 ACCCTTCATTGATCGAACCCTCCTCCGCGCTCGGGACCCGCCTCAGCCTGCTTTTCATCA 619 Query 670 TGTTGAATATCAGCCTGCACCAAGTATGAAGATACCTCTTGATCCGTCTAAATCAGGACC 729 |||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||| || Sbjct 620 TGTTGAATATCAGCCTGCCCCCAGTATGAGGATCCCTCTTGATCCGTCCAAATCAGGCCC 679 Query 730 TGAGAATACCACTGTCTCTATATTCAAATTAACACGAGACCAGCTTGTTGCTCTTAAGGC 789 ||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| ||||| Sbjct 680 TGACAATACCACCGTCTCTATTTTCAAATTATCACGCGACCAGCTTGTTGCTCTCAAGGC 739 Query 790 GAAATCCAAGGAGGATGGGAACACTGTCAGCTACAGCTCATACGAGATGTTGGCAGGGCA 849 |||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| || Sbjct 740 TAAATCCAAGGAGGATGGGAACATTGTAAGTTACAGCTCATACGAGATGCTGGCAGGCCA 799 Query 850 TGTGTGGAGATCAGTGGGAAAGGCGCGAGGGCTTCCAAACGACCAAGAGACGAAACTGTA 909 ||||||||||||||||| |||||||| || |||||| ||||||||||||| ||| |||| Sbjct 800 CGTGTGGAGATCAGTGGGCAAGGCGCGCGGACTTCCAGACGACCAAGAGACCAAATTGTA 859 Query 910 CATTGCAACTGATGGAAGGTCTAGACTACGTCCGCAGCTGCCTCCTGGTTACTTTGGGAA 969 |||||||||||||||||||| ||||| | |||||||| || |||||||||||||| || Sbjct 860 TATTGCAACTGATGGAAGGTCCAGACTGCACCCGCAGCTTCCCCCTGGTTACTTTGGCAA 919 Query 970 TGTGATATTCACTGCAACACCATTGGCTGTTGCAGGGGATTTGTTATCTAAGCCAACATG 1029 ||| |||||||| || ||||||||||| |||||||||||| || |||| |||||||| || Sbjct 920 TGTTATATTCACCGCGACACCATTGGCCGTTGCAGGGGATCTGCTATCAAAGCCAACGTG 979 Query 1030 GTATGCTGCAGGACAGATTCATGAT-TTCTTGGTTCGTATGGATGATAACTATCTGAGGT 1088 |||||||||||||| ||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 980 GTATGCTGCAGGACTTATTCATGATGTT-TTGGTTCGCATGGACGATAACTATCTGAGGT 1038 Query 1089 CAGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1148 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 CTGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1098 Query 1149 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTTAGATTACCTATTTATGATGCAG 1208 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1099 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTCAGATTACCCATTTATGATGCAG 1158 Query 1209 ACTTTGGTTGGGGTCGTCCTATCTTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1268 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1159 ACTTTGGTTGGGGTCGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1218 Query 1269 CTTTTGTGCTACCAAGTCCTACTAATGATGGCAGCTTATCCGTTGCCATTGCCCTCCAAT 1328 | |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| Sbjct 1219 CGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCCTATCCGTGGCCATTGCCCTCCAAT 1278 Query 1329 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTTTGAGATATGAGAGCGTTAAGC 1383 ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 1279 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTACGAGATATGAGAGAGATAAGC 1333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64791506745 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5