BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49230.1 Length=933 Score E Sequences producing significant alignments: (Bits) Value Ahg916495 jgi|Araly1|916495|Al_scaffold_0008_1246 942 0.0 > Ahg916495 jgi|Araly1|916495|Al_scaffold_0008_1246 Length=636 Score = 942 bits (510), Expect = 0.0 Identities = 598/640 (93%), Gaps = 8/640 (1%) Strand=Plus/Plus Query 123 ATGGATTCGAATTCATGGATCAATTGTCC-CCCTGTGTTTTCATCATCGCCTTCTTCACG 181 ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 1 ATGGATTCGAATTCATGGATCAATTGTCCTCCC-GTGTTTTCATCATCGTCTTCTTCACG 59 Query 182 CCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCGTTACCAATCTCGATCAGATTTGTATTTGGGAGATGTTGAAGGAGAAGACGATTTGAA 119 Query 242 AGCTGAGTTTATGTGTCCTTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 301 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AGCAGAGTTTATGTGTCCGTTTTGTGCAGATGAGTTTGATATTGTTGGTCTTTGTTGTCA 179 Query 302 TATTGATGTGAATCATCCTGTTGAAGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAA 361 ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 180 TATTGATGTGAATCATCCTGTGGAGGCTAAGAATGGGGTTTGTCCTGTCTGCACAAAGAG 239 Query 362 GGTGGGATTGGACATTGTTGGCCATATAACAACGCAACACGGGAACGTATTTAAGGTGCA 421 ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 240 GGTTGGATTGGACATTGTTGGCCATATTACAACGCAACACGGGAGCGTATTTAAGGTGCA 299 Query 422 GCGAAGAAGAAGGTTGCGTAAAGGTGGATATAGCTCTACCTATCTTACTCTTAAAAAAGA 481 |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || Sbjct 300 GCGAAGGAGAAGGTTGCGTAAAGGTGGATATAGCTCTGCCTATCTTACGCTTAAAAAGGA 359 Query 482 GCTTCGAGAAGCTAACTTACAGTCTCTTGGAGGGTCTTCCACTTTCATTCCCTCTTCCAA 541 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 360 GCTTCGAGAAGCTAACTTACAGTCTTTTGGAGGATCTTCCACTTTCATTCCCTCTTCCAA 419 Query 542 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCCCCTTCGGCTATACCTAT 601 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 420 TATAGATTCTGATCCTCTACTCTCATCCTTTATGTTTAAACCTCCTTCGGCTATACCCAT 479 Query 602 CACTGAAGGAGACTCGGTAGCACAA-GTCTCACCTAAGGACACCTCTAAAAGCAAAATAC 660 | |||||||||||||| ||||| | || ||||||||||||||| |||||||||| |||| Sbjct 480 CGCTGAAGGAGACTCGTTAGCA-ATTGTTTCACCTAAGGACACCCCTAAAAGCAACATAC 538 Query 661 AACAAGAATCA-TTCTCAAACGAAGATCAAGAGAAGGC-AAAGAAGAGCAAGTTTGTGCG 718 ||||| |||| || || | |||||||||||||||||| ||| |||||| ||||||||| Sbjct 539 GACAAGTATCACTT-TCCATCGAAGATCAAGAGAAGGCGAAA-AAGAGCGAGTTTGTGCA 596 Query 719 GGGCTTGCTTTGGTCAACCATGCTTGAAGACAAGTTCTAA 758 |||| |||||||||| ||||||||||||||||| ||||| Sbjct 597 GGGCATGCTTTGGTCTACCATGCTTGAAGACAACATCTAA 636 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34615608636 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5