BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49330.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949426 jgi|Araly1|949426|scaffold_801313.1 1602 0.0
> Ahg949426 jgi|Araly1|949426|scaffold_801313.1
Length=1072
Score = 1602 bits (867), Expect = 0.0
Identities = 1005/1072 (94%), Gaps = 7/1072 (1%)
Strand=Plus/Plus
Query 68 AGAAGAGA-C-CGAGAAGCAATGGGAAGGGCTCCGTGTTGTGAGAAAATCGGGTTGAAGA 125
|||||||| | ||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AGAAGAGATCGAGAGAAACGATGGGAAGGGCTCCGTGTTGCGAGAAAATCGGGTTGAAGA 60
Query 126 GAGGGAGATGGACAGCCGAGGAAGATGAGATCCTCACCAAGTATATTCAGACCAATGGTG 185
|||| ||||||| ||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 61 GAGGTCGATGGACCGCCGAGGAAGATGAGATTCTAACCAACTATATTCAGACCAATGGTG 120
Query 186 AAGGTTCTTGGCGATCTTTGCCTAAGAAAGCTGGATTGTTGAGATGTGGAAAGAGCTGTA 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGTTCTTGGCGATCTTTGCCTAAGAAAGCTGGATTGTTGAGATGTGGAAAGAGCTGTA 180
Query 246 GACTAAGGTGGATAAACTACTTAAGAAGAGACTTAAAAAGAGGAAATATTACTTCCGACG 305
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 181 GACTAAGGTGGATAAACTATTTAAGAAGAGACTTGAAAAGAGGAAATATTACGGCCGACG 240
Query 306 AAGAAGAAATAATCGTCAAGTTGCATTCCCTTCTCGGCAACAGATGGTCACTTATTGCAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGAAGAAATAATCGTCAAGTTGCATTCCCTTCTCGGCAACAGATGGTCACTTATTGCAA 300
Query 366 CACATCTACCAGGAAGAACAGACAACGAAATTAAAAACTATTGGAACTCACATCTCAGCC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACATCTACCAGGAAGAACAGACAACGAAATTAAAAACTATTGGAACTCACATCTCAGCC 360
Query 426 GCAAAATCTATGCCTTCACTGCCGTTTCCGGAGATGGACACAATCTACTCGTCAACGATG 485
|||||||||| ||||||||||||||||||||||| | |||||||||| ||||| |||||
Sbjct 361 GCAAAATCTACGCCTTCACTGCCGTTTCCGGAGACGAACACAATCTAGTCGTCGACGATT 420
Query 486 TAGTCTTGAAGAAATCTTGTTCATCGTCTTCTGGAGCCAAGAACAATAACAAGACCAAGA 545
||||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 421 TAGTCCTGAAGAAATCTTGTTCTTCGTCTACTGGAGCCAAGAACAATATTAAGACCAAGA 480
Query 546 AGAAGAAGAAGGGAAGGACTAGTAGGTCATCCATGAAGAAACACAAGCAAATGGTGACGG 605
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 AGAAGAAGAAAGGAAGAACTAGTAGGTCATCCATGAAGAAACACAAACAAATGGTGACGG 540
Query 606 CCTCACAATGTTTCTCACAACCTAAGGAGCTAGAGAGTGATTTCAGTGAGGGAGGGCAAA 665
|||| |||||||||||||||||||| |||||||||||||| ||| |||||||| | |||
Sbjct 541 CCTCGCAATGTTTCTCACAACCTAAAGAGCTAGAGAGTGAGATCAATGAGGGAGAGAAAA 600
Query 666 ATGGTAATTTTGAAGGAGAGTCTTTGGGGCCTTATGAGTGGTTGGATGGTGAGTTAGAAC 725
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATGGTAATTTCGAAGGAGAGTCTTTGGGGCCTTATGAGTGGTTGGATGGTGAGATAGAAC 660
Query 726 GGCTCTTGAGTAGTTGTGTCTGGGAATGCACTAGTGAAGAGGCTGTGATTGGAGTAAATG 785
||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 661 GGCTCTTGAGTGGTTGTGTCTGGGAGTGTACTAGTGAAGAACCTGTGATTGGAGTAAATG 720
Query 786 ATGAAAAGGTGTGTGAGAGTGGGGACAATAGTAGTTGTTGTGTTAATTTGTTTGAAGAAG 845
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 ATGAAAAGGTTTGTGAGAGTGGGGACAATAGTAGTTGTTGTGTCGGTTTGTTTGAAGAAG 780
Query 846 AACAAGGAAGCGAGACAAAGATTGGTCACGTAGGAATCACAGAGGTTGAT---CATGATA 902
||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||||
Sbjct 781 AACAAGGAAGCGAGACAAAGATTGGTCACATAGGAATTACAAACGTTGATGATCATGATA 840
Query 903 TGACGGTGGAAAGAG-AAAGAGAGGGAAGTTTTTTAAGTTCGAATTCAAATGAAAATAAT 961
||| ||| |||| || |||||||||||||| |||| ||||||| ||| ||||||| ||||
Sbjct 841 TGAAGGTAGAAA-AGGAAAGAGAGGGAAGTGTTTTGAGTTCGACTTCGAATGAAAGTAAT 899
Query 962 GATAAAGATTGGTGGGTTGGTCTATGTAATTCTTCAGAAGTTGGGTTTGGGGTTGATGAG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 GATAAAGATTGGTGGGTTGGTCTATGTAATTCTTCAGAAGTTGGGTTTGGGATTGATGAG 959
Query 1022 GAGTTGCTTGATTGGGAGTTTCAAGGTAATGTCACTTGTCAAAGTGATGATCTATGGGAT 1081
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 960 GAGTTGCTTGATTGGGAGTTTCAAGGTAATGTGACTTGTCAAAGTGATGATCTCTGGGAT 1019
Query 1082 CTCTCAGATATTGGAGAGATAACATTGGAGTGATACTACCGAGCAAGTGGAT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTCTCAGATATTGGAGAGATAACATTGGAGTGATACTACCGAGCAAGTGGAT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5