BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49440.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904144 jgi|Araly1|904144|Al_scaffold_0003_1272 610 8e-174
Ahg907121 jgi|Araly1|907121|Al_scaffold_0002_202 340 1e-92
> Ahg904144 jgi|Araly1|904144|Al_scaffold_0003_1272
Length=504
Score = 610 bits (330), Expect = 8e-174
Identities = 447/503 (89%), Gaps = 9/503 (2%)
Strand=Plus/Plus
Query 763 CCACCACGAACAATCCACAAGAGCC-AAACGACTCCTTGGATTGCCTCCACAAGAGAAGC 821
||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 1 CCACCACGAACAAACCACAAGAGCCAAAACGACTCCGTGAATTGCCTCCACAAGAGAAGT 60
Query 822 CCGTCGGATCAATCACACCATCACCAGAGCTGGAGAAAA-AACAGGTAGAGAGACCCGAG 880
||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||
Sbjct 61 CCGTCGGATCAATCACACCATCACCGGAGCTGGAGAAAACTA-AGGCGGAGAGACCCGAG 119
Query 881 AAGAGAAGATCTGCCACACCGAAAACTCACCGTTGTGCCCAAATCA-AAGAAGAACGACG 939
||||||||||| | |||||||| ||||| ||| ||||||||| || |||| ||||||||
Sbjct 120 AAGAGAAGATCCGTCACACCGAGAACTCGCCGAAGTGCCCAAACCACAAGAGGAACGACG 179
Query 940 ATGTCTGAAGAAACATGGCGATGCACCACCAATTTATCAGATCTGGAAGATGGTCCCGTC 999
| ||||||||||||| || |||||||||||||||| ||||||||||| |||||||||| |
Sbjct 180 ACGTCTGAAGAAACACGGTGATGCACCACCAATTTCTCAGATCTGGAGGATGGTCCCGCC 239
Query 1000 GATAGGAGCCGCACAACCGCTACAGTCGTCTCATCAAAGCCACTGCCTTAAACGGAGAGA 1059
| |||||||||||| | |||||| ||| | |||||||||||| ||| |||| ||||||
Sbjct 240 GTTAGGAGCCGCACCGCTGCTACAATCGCCGCATCAAAGCCACAACCTAAAACAGAGAGA 299
Query 1060 GACACGCCGCACGTCCTTTGCTCCGTGCGTGACCACTCGCCGCAT-ACCACCAACAAGAG 1118
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 300 GACACGCCGCACGTCCTTTGCTCCGTGCGTGGCCACTCGCCGCTTTACCACCAACAAGAG 359
Query 1119 ACGAAGAGCAAGCCAGA-TTTGAACACCACCGGAGCTTCAaaggagaggcagaggagata 1177
||||||||||||| || |||| ||||||||| | ||||||||| ||||| |||||||||
Sbjct 360 ACGAAGAGCAAGCT-GAATTTGGACACCACCGAAACTTCAAAGGGGAGGCGGAGGAGATA 418
Query 1178 agagagaggaaaggagaa-gagggagaagCCCTCTCCGGCCACCGGTGAGAAGCACCGTG 1236
| ||||||||| || ||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 419 ACAGAGAGGAAGGG-GAAAGAGAGAGAAGCCCTCTCCGGCCACCGGTGAGGAGCACCGTG 477
Query 1237 ACCGGAGAGGCACAGATCTAGAT 1259
|||||||||||| ||||| ||||
Sbjct 478 ACCGGAGAGGCAGAGATCGAGAT 500
> Ahg907121 jgi|Araly1|907121|Al_scaffold_0002_202
Length=435
Score = 340 bits (184), Expect = 1e-92
Identities = 360/440 (82%), Gaps = 31/440 (7%)
Strand=Plus/Minus
Query 835 CACACCATCACCAGAGCTGGAGAAAA-AACAGGTAGAGAGACCCGAGAAGAGAAGATCTG 893
||||||| |||| |||| |||||||| | |||| |||||||||||||||||||||| ||
Sbjct 431 CACACCAACACCGGAGC-GGAGAAAACTA-AGGTGGAGAGACCCGAGAAGAGAAGATTTG 374
Query 894 CCACACCGAAAACT-CACCGTTGTGCCCAAATCA-AAGAAGAACGACGATGTCTGA-AGA 950
|||||||||| || || || |||||||||| | |||| ||||| |||||||| | ||
Sbjct 373 TCACACCGAAAGCTCCA-TGTAGTGCCCAAATTACAAGAGGAACGGCGATGTCT-AGAGC 316
Query 951 AACATGGCGATGCACCACCAATTTATCAGATCTGGAAGATGGTCCCGTCGATAGGAGCCG 1010
|||| || ||||||||||| ||| ||||||||||||| | |||||| || |||||||||
Sbjct 315 AACACGGTGATGCACCACCGGTTTCTCAGATCTGGAAGTTTGTCCCGCCGTTAGGAGCCG 256
Query 1011 CACAACCGCTACAGTCGTCTCATCAAAGCCACTGCCTTA-AACGGAGAGAGACACGCCGC 1069
||| | |||||||||| | ||||||| |||| || || || |||||| |||| || |
Sbjct 255 CACTGCTGCTACAGTCGCCGCATCAAA-CCACAACC-TAGGACAGAGAGACACACACCAC 198
Query 1070 ACGTCCTTTGC-TCCGTGCGTGACCACTCGCCGC-ATACCACCAACAAGAGACGAAGAGC 1127
||||||||||| | |||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 197 ACGTCCTTTGCAT-CGTGCGTGGCCACTCGCTGCTCTACCACCAACAAGAGACGAAGAGC 139
Query 1128 AAGCCAG-AT--T-TGAACACCACCGGAGCTTCAaagga-gaggca-gaggagataagag 1181
||||| | || | ||| || | |||||||| | || || |||| | ||||||| || |
Sbjct 138 AAGCC-GTATAATCTGAGCATCTCCGGAGCTGC-AA-GACGAGG-AGGAGGAGA-AA-AC 85
Query 1182 agaggaaaggagaagagggagaagCCCTCTCCGGCCACCGGTGAGAAG-C-ACCGTGACC 1239
|||| ||| |||| ||| |||||||||||||||||||||||| | ||| | |||||||||
Sbjct 84 AGAGAAAAAGAGAGGAGAGAGAAGCCCTCTCCGGCCACCGGT-A-AAGACCACCGTGACC 27
Query 1240 GGAGAGGCACAGATCTAGAT 1259
||||| ||| ||| | ||||
Sbjct 26 GGAGACGCAGAGAAC-AGAT 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5