BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49480.1 Length=896 Score E Sequences producing significant alignments: (Bits) Value Ahg495005 jgi|Araly1|495005|fgenesh2_kg.8__821__AT5G49480.1 1040 0.0 > Ahg495005 jgi|Araly1|495005|fgenesh2_kg.8__821__AT5G49480.1 Length=699 Score = 1040 bits (563), Expect = 0.0 Identities = 660/704 (94%), Gaps = 18/704 (3%) Strand=Plus/Plus Query 11 AAAGCTTCCTTCACAATCTCAAAAGCCATTTTTCAAATTTC---AAACTCagagaga--g 65 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1 AAAGCTTCCTTCACAATCTCAAAAGCCA-TTTTCAAATTTCAAAAAACTCAGAGAGATCA 59 Query 66 agagaTGTGTCCTTCTGGTAGAATCGCGATTCCGATAACCACCACCGCGAATCCAAATTT 125 || |||||||||||| |||||||||||||||||||||||||||||||||||| || |||| Sbjct 60 AGCGATGTGTCCTTCCGGTAGAATCGCGATTCCGATAACCACCACCGCGAATTCAGATTT 119 Query 126 CCGACCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 185 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CCGTCCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCT 179 Query 186 CCGTGCATTCTACGCCGGAATCCCTTCCGGTGAAAACAACGACGAGACGATGATCGGAAC 245 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 180 CCGTGCATTCTACGCCGGAATCACTTCCGGTGAAAACAACGACGAGGCGATGATCGGAAC 239 Query 246 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAATTCGAGAA 305 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 240 GATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAGTTCGAGAA 299 Query 306 AGTTCTAGAAACGACGCCG-T-TT-TCTAGATCTGGTAACGGAGGAGACGATGGATTGAT 362 ||||||||||||| ||||| | || | ||||||||||||||||||||||||||||||||| Sbjct 300 AGTTCTAGAAACGGCGCCGTTGTTGTGTAGATCTGGTAACGGAGGAGACGATGGATTGAT 359 Query 363 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGACTGAGTTACGGAGATCT 422 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 360 GAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGATTGAGTTACGGAGATCT 419 Query 423 GAAGAGTTATATGGATTCGGCTGGTTTAGCTG-TAACCGACGATGAAATCAAATCTATGA 481 ||| |||||||||||||||||||||||||||| | |||| |||||||||||| |||||| Sbjct 420 GAAAAGTTATATGGATTCGGCTGGTTTAGCTGCTT-CCGATGATGAAATCAAAGCTATGA 478 Query 482 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTCGACGGTCTGCTTAAGATCT 541 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | Sbjct 479 TTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTTGACGGTTTGCTTAAGATTT 538 Query 542 TTGGGTGTTGaaaaaaaaaGTTCGttttttttgacaccgcacattttccaactttattt- 600 ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 539 TTGGGTGTTGAAAAAAAAA-TT-GTTTTTTTTGACACCGCACATTTTCCAACTTTATTTA 596 Query 601 tgttt-ctcagttttgtttgtttgtttgcagaagtgtatttgtgtccacccagattttgt 659 | | || |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TCTCAGCTTTGTTT-GTTTGTTTGTTTGCAGAAGTGTATTTGTGTCCACCCAGATTTTGT 655 Query 660 tttat--gttgttATAAAAATGTGAGAAAACTAATGTTGGAACA 701 ||| | ||||||||||||||||||||||| ||||||||||||| Sbjct 656 TTTCTCTGTTGTTATAAAAATGTGAGAAAATTAATGTTGGAACA 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33205060707 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5