BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49700.1 Length=831 Score E Sequences producing significant alignments: (Bits) Value Ahg949481 jgi|Araly1|949481|scaffold_801368.1 1225 0.0 Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1 497 4e-140 > Ahg949481 jgi|Araly1|949481|scaffold_801368.1 Length=855 Score = 1225 bits (663), Expect = 0.0 Identities = 779/832 (94%), Gaps = 20/832 (2%) Strand=Plus/Plus Query 1 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCAT 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |||| Sbjct 21 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTCTCCAAGCTT-C-C-TCAT 77 Query 61 caacaacaacagcaacaacaacaacaacaacaCTCTCTTACCTCTCACTTCCACCTCTCC 120 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 ---------------CAACAACAACAACAACACTCTCTTACCTCTCACTTCCACCTCTCC 122 Query 121 TCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGC 180 ||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 123 TCCACCGCAACACCCACCATCGATGACTCCTCCATCGAAGTCGTCCGACGTCCACGTGGC 182 Query 181 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGAC 240 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct 183 AGACCACCAGGTTCCAAAAACAAACCTAAACCACCTGTCTTCGTTACACGTGATACCGAC 242 Query 241 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC 300 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 243 CCTCCTATGAGTCCTTACATCCTCGAAGTTCCATCAGGAAACGACGTCGTTGAAGCCATC 302 Query 301 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTA 360 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 303 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTTTGTGTCCTTAGTGGCTCTGGCTCTGTA 362 Query 361 GCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACCATAACTTTCCAT 420 ||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||| Sbjct 363 GCTAACGTCACTTTACGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACCATAACTTTCCAC 422 Query 421 GGAAAGTTTGAtctcctctccgtctccgcaacgttt-ctccctcctccgcctcgtacttc 479 |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 423 GGAAAGTTCGATCTCCTCTCCGTCTCCGCAAC-TTTCCTCCCTCCTCCGCCTCGTACTTC 481 Query 480 cttgtctcctcccgtTTCTAACTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAAT 539 |||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 482 CTTGTCCCCTCCCGTCTCTAACTTCTTCACCGTCTCTCTAGCCGGACCTCAAGGACAAAT 541 Query 540 CATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGC 599 |||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 542 CATCGGTGGGTTCGTCGCTGGTCCACTTATCTCCGCAGGAACAGTTTACGTCATCGCTGC 601 Query 600 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 AAGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGC 661 Query 660 GGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGGTGGCGGTGAAGAGTCAGG 719 ||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 662 GGGGACAGGAGAAAGAGAGGGCCAATCTCCACCGGTGTCTGGTGGCGGTGAAGAGTCAGG 721 Query 720 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGG 781 Query 780 TGGCTCTGATGTTATTTGGGCCCCTACAGCCAGAGCTCCACCGCCATACTAA 831 |||||||||||||||||||||||| || ||||| |||||||||||||||||| Sbjct 782 TGGCTCTGATGTTATTTGGGCCCCCACCGCCAGGGCTCCACCGCCATACTAA 833 > Ahg471623 jgi|Araly1|471623|fgenesh2_kg.1__1577__AT1G14490.1 Length=816 Score = 497 bits (269), Expect = 4e-140 Identities = 464/555 (84%), Gaps = 26/555 (5%) Strand=Plus/Plus Query 169 CGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCTAAACCACCCGTCTTCGTCACA 228 ||||||||||||||||| | |||||||||||||||||||||| | || |||| || | | Sbjct 16 CGTCCACGTGGCAGACCTCGAGGTTCCAAAAACAAACCTAAAGCTCCAATCTTTGT-A-A 73 Query 229 CGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTC 288 | || ||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 74 C----CATCGACCCTCCTATGAGTCCTTACATCCTCGAAGTGCCATCCGGAAACGACGTC 129 Query 289 GTCGAAGCCATCAACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGC 348 || |||||| | ||||||||||||||||||||| ||||||| | |||||||| |||||| Sbjct 130 GTTGAAGCCCTAAACCGTTTCTGCCGCCGTAAAGCCATCGGCTTTTGCGTCCTCAGTGGC 189 Query 349 TCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTGGCTCTACC 408 || ||||| || ||| | ||||| || |||||||| || |||||||||| |||||| ||| Sbjct 190 TCAGGCTCCGTCGCTGATGTCACCTTGCGTCAGCCTTCTCCGGCAGCTCCTGGCTCAACC 249 Query 409 ATAACTTTCCATGGAAAGTTTGAtctcctctccgtctccgcaacgtttc-tccctcctcc 467 || |||||||| |||||||| ||||| ||||| |||||||| || |||| |||||||||| Sbjct 250 ATTACTTTCCACGGAAAGTTCGATCTTCTCTCTGTCTCCGCCAC-TTTCCTCCCTCCTCC 308 Query 468 gcctc-gtacttccttgtctcctcccgtT-TCTAACTTCTTCACCGTCTCTCTCGCTGGA 525 ||||| | ||||||||| | |||||| || ||||| |||||||||||||||||||| ||| Sbjct 309 GCCTCAG-ACTTCCTTGCCCCCTCCC-TTCTCTAATTTCTTCACCGTCTCTCTCGCCGGA 366 Query 526 CCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTT 585 ||||| |||||| ||||||| || |||||||||||||| || || | || ||||| ||| Sbjct 367 CCTCAGGGACAAGTCATCGGTGGATTCGTCGCTGGTCCTCTCGTTGCCGCCGGAACTGTT 426 Query 586 TACGTCATCGCCGCAAGTTTCAACAACCCTTCTTATCACCGGTTACC-G--GCGGAAGAA 642 |||||| |||| | |||||||| |||||| | |||||||||||||| | ||||| ||| Sbjct 427 TACGTCGTCGCTACTAGTTTCAATAACCCTGCCTATCACCGGTTACCCGCTGCGGAGGAA 486 Query 643 GAGCAAA-AACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTGG 701 ||||||| || |||| |||| | |||||| | | | ||||| |||||||||||||| Sbjct 487 GAGCAAAGAA-ACTCAGCGG--A-AGGGGA--G-G-GC--CAATCGCCGCCGGTCTCTGG 536 Query 702 TGGCGGTGAAGAGTC 716 || |||| |||||| Sbjct 537 AGGTGGTGGAGAGTC 551 Score = 84.2 bits (45), Expect = 1e-15 Identities = 58/64 (91%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 760 ATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC-CCCTACAGCCAGAGCTCC 818 |||||||||||||||||||||||||||||||| |||||| | ||| || |||| |||||| Sbjct 553 ATGTACAGTTGCCACATGGGTGGCTCTGATGTCATTTGGTCTCCCAAC-GCCAAAGCTCC 611 Query 819 ACCG 822 |||| Sbjct 612 ACCG 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30727071102 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5