BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49730.1
Length=2529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949484 jgi|Araly1|949484|scaffold_801371.1 3435 0.0
Ahg949485 jgi|Araly1|949485|scaffold_801372.1 3190 0.0
> Ahg949484 jgi|Araly1|949484|scaffold_801371.1
Length=2270
Score = 3435 bits (1860), Expect = 0.0
Identities = 2124/2252 (94%), Gaps = 16/2252 (1%)
Strand=Plus/Plus
Query 38 GAAGTGGAAATTCAAATAAAGATGGATGATTATGAAACCCCTCTTTTGTCCAAGG----- 92
||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 GAAGTAGAAATTCAAATAAAGATGGATGATCATAAAACCCCTCTTTTGTCCAAGGACTCA 60
Query 93 --A-C-tcatcatca--t-catcatcTGTGATTACTTCATCTTTGAAATGGATATTGAAA 145
| | ||||||||| | ||||||||||| | |||||||||||||||||| ||||||||
Sbjct 61 TCATCATCATCATCATCTACATCATCTGTGGTGACTTCATCTTTGAAATGGGTATTGAAA 120
Query 146 GTTGTAATGTCTATGATTTTTGTGACTTGGGTTGTTTTTCTTATGATGA-TGTACCCTGA 204
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 GTTGTAATGTCTATGATTTTTGTGACTTGGGTTGTTTTTCTTATGAT-ATTGTACCCTGA 179
Query 205 ACAACTCGGTGATGATTTCCTCACATTTGTCTCCTCCAAGACTTTCCTAGGCACCACAGG 264
||||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct 180 ACAACTCGGCGATGATTTCCTCACATTAGTCGCCTCCAAGACTTTCCTCGGCACCACAGG 239
Query 265 AACCATGTTCTTGATTTTCAGTTGTCCGATTCTTGTCATCTCTGTCTTAGCTTCTCTCTA 324
|| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 240 AAGCATGTTCTTAATTTTCAGTGGTCCGATTCTTGTCATCGCTGTCTTAGCTTCTCTCTA 299
Query 325 TCTCATTATCTCCGGGGAAGACAAGGTCTTCACTAAGAAGAAGATATCGAAATTCCCGAG 384
||||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||
Sbjct 300 TCTCATTATATCCGGAGAAGACAAGGTCTTCACTAAAAACAAGATATCAAAATTCCCGAG 359
Query 385 GTTTAGGCTATGGACATTCCCTGTTCTTGTGGATGGACCATTTGGAGTTGTTTCTGCAGC 444
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GTTTAGGCTATGGACATTTCCTGTTCTTGTGGATGGACCATTTGGGGTTGTTTCTGCAGC 419
Query 445 TGAGTTTCTTGGAATTATGGTCTTCTCTGtttttttCCTTTGGTCTATCTATGCTTATAC 504
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 420 TGAGTTTCTTGGAATTATGGTCTTCTCTGTTTTCTTCCTTTGGGCTATATATGCTTATAC 479
Query 505 CTTGAGGAATCTTGACCTTCTTGAACGCTTCCACGTCCTTCCCAAGAATCGAAGTATTCT 564
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGAGGAATCTTGATCTTCTTGAACGCTTCCACGTCCTTCCCAAGAATCGAAGTATTCT 539
Query 565 TCTGTTGGAGGTAACGGGTCTGCGTTTAGGAATGATTGGATTGTTGTGTATGGttttttt 624
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 540 GCTGTTGGAGGTAACTGGTCTGCGTTTAGGAGTGATTGGATTGTTGTGTATGGTATTTTT 599
Query 625 GTTTCTTCCAATCTCGAGAGGTTCCATTCTTCTCCGTCTTATCGATATCCCTTTTGAACA 684
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 600 GTTTCTTCCAATCTCGAGAGGCTCCATTCTTCTCCGCCTTATCGATATCCCTTTCGAACA 659
Query 685 TGCTACAAGATATCATGTTTGGCTTGGTCATATCACCATGGCTTTCTTCTCCTTACATGG 744
||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 660 TGCTACACGATACCATGTTTGGCTTGGTCATATCACTATGGCTTTCTTCTCTTTACATGG 719
Query 745 CCTCTGTTATGTTGTTGGATGGATCATTCAAGGTCAACTTTTAGAGCTTATATTTTCATG 804
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 720 CCTCTGTTATGTTGTTGGATGGACCATTCAAGGTCGACTTTTAGAGCTTATATTTTCATG 779
Query 805 GAATGCTATCGGAATTGCTATCTTACCCGGAGTTATCAGTCTAGTGGCGGGTTTACTGAT 864
||||||||| ||||||||| | ||||| |||||||||||||||||||| |||||| | ||
Sbjct 780 GAATGCTATTGGAATTGCTGTGTTACCGGGAGTTATCAGTCTAGTGGCTGGTTTATTCAT 839
Query 865 GTGGGTCACATCGCTTCACACCGTGAGAAAGAATTACTTTGAGCTCTTCTTCTACACACA 924
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGGGTCACGTCGCTTCACACCGTGAGAAAGAATTACTTTGAGCTCTTCTTCTACACACA 899
Query 925 TCAACTATACATCGTCTTTATTGTGTTCTTGGCACTTCATGTTGGTGATTACATGTTTAG 984
||||||||||||||||||| | || ||||||||||||||||||||||| ||| | || ||
Sbjct 900 TCAACTATACATCGTCTTTGTCGTCTTCTTGGCACTTCATGTTGGTGACTACTTATTCAG 959
Query 985 TATAGTTGCTGGAGGAATATTTCTTTTCATTCTAGACCGCTTCTTGAGGTTCTGCCAATC 1044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATAGTTGCTGGAGGAATATATCTTTTCATTCTAGACCGCTTCTTGAGGTTCTGCCAATC 1019
Query 1045 AAGAAGGACTGTTGATGTAATCTCTGCAAAGAGTTTACCTTGTGGAACTCTTGAACTAGT 1104
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1020 CAGAAGGACTGTTGATGTAATCTCTGCAAAGAGTTTGCCTTGTGGAACTCTGGAACTAGT 1079
Query 1105 CCTTTCAAAACCACCAAATATGCGATACAATGCGCTTAGCTTTATCTTTCTTCAAGTGAG 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCTTTCAAAACCACCAAATATGCGATACAATGCGCTTAGCTTTATCTTTCTTCAAGTGAG 1139
Query 1165 GGAACTATCTTGGCTACAATGGCATCCATTT-AGTGTTTCTTCAAGCCCTCTAGATGGGA 1223
||||||||| ||||||||||||||||| ||| |||||||| ||||| |||||||||||||
Sbjct 1140 GGAACTATCATGGCTACAATGGCATCC-TTTCAGTGTTTCATCAAGTCCTCTAGATGGGA 1198
Query 1224 ACCATCATGTTGCGGTTCTCATAAAGGTTCTTGGTGGATGGACTGCAAAGCTTAGAGACC 1283
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1199 ACCATCATGTTGCGGTTCTCATAAAGGTTCTTGGTGGATGGACCGCAAAGCTTAGAGACC 1258
Query 1284 AGTTGTCAAATCTATACGAGGCAGAGAACCAAGATCAGCTCATTTCTCCTCAGTCATATC 1343
|||||||||||||||| ||||||||||| ||||| ||||| ||||||||| | |||||||
Sbjct 1259 AGTTGTCAAATCTATATGAGGCAGAGAATCAAGACCAGCTTATTTCTCCTGAATCATATC 1318
Query 1344 CTAAAATCACAACTTGTGTGGAGGGACCTTATGGCCATGAATCTCCATACCATTTAGCGT 1403
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1319 CTAAAATCACAACTTGTGTGGAGGGACCTTATGGCCATGAATCTCCATACTACTTAGCGT 1378
Query 1404 ATGAGAACCTGGTCTTAGTAGCAGGAGGAATCGGGATTACGCCTTTTTTCGCCATCTTAA 1463
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACGAGAACCTGGTCTTAGTAGCAGGAGGAATCGGGATTACGCCTTTTTTCGCCATCTTAA 1438
Query 1464 GCGATATCCTACACCGTAAAAGAGATGGGAAAGCTTGTTTACCTAGTAAGGTTTTAGTTG 1523
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCGATATCCTACATCGTAAAAGAGATGGGAAAGCTTGTTTACCTAGTAAGGTTTTAGTTG 1498
Query 1524 TATGGGCCATTAAAAACTCAGACGAGCTCTCTCTGCTCTCAGCAATTGACATACCTTCCA 1583
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1499 TATGGGCCATTAAAAACTCAGACGAACTCTCTCTTCTCTCAGCAATTGACATACCTTCCA 1558
Query 1584 TTTGCCCTTTCTTCTCTAAGAAACTAAACCTTGAGATTCACATATATATCACTCGACAAT 1643
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1559 TTTGCCCTTTCTTCTCTAAGAAACTAAACCTTGAGATTCACATATATGTCACTCGACAAT 1618
Query 1644 CCGAGCCTCGCTTGGAAGATGGGATGGTTCACAAGGTGGTGCATCCTTCTGTCAAGCTAC 1703
||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1619 CCGAGCCCCGCTTGGAAGATGGGATGGTTCACAAGGTGGTGCATCCTTCTGTTAAACCAC 1678
Query 1704 CACGGACCAACGGATGTTCTATGTCGGTACTAGTTGGTACAGGGGATAACATATGGTCTG 1763
||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||
Sbjct 1679 CACGGACCAACGGATGTTCCATGTCGGTTCTAGTTGGTACAGGGGACAACTTATGGTCTG 1738
Query 1764 GACTCTATCTAATTATATCCACCATTGGATTTATTTCAATGATCACATTGTTGGACATCT 1823
|||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1739 GACTCTATCTAATTGTCTCCACCATTGGGTTTATTGCAATGATCACATTGTTGGACATCT 1798
Query 1824 TTTACATAAAAAGATACAACATAACAACGTGGTGGTACAAGGGACTTCTATTTGTTGGTT 1883
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1799 TTTACATAAAAAAATACAACATAACGACGTGGTGGTACAAGGGACTTCTATTTGTTGTTT 1858
Query 1884 GTATGGTTGCAAGTGTCTTGATTTTTGGAGGTCTTGTGGTTGTTTTCTGGCATCGCTGGG 1943
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1859 GTATGGTTGCAAGTGTGTTGATTTTTGGAGGTCTTGTGGTTGTTTTCTGGCATCTCTGGG 1918
Query 1944 AACACAAAACCGGTGAAGTGGAAGCAAATGGCAACGACAAGGTAGATTTGAATGGAGAAG 2003
||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1919 GTCACAAAATCGGTGAAGTGGAAGGAAATGGCAATGACAAGGTGGATTTGAATGGAGAAG 1978
Query 2004 AAACCCATAATCCATCTGCAGCAGAGCTTAAGGGCTTGGCAATAGAAGAAGATGTCCAGA 2063
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 1979 AAACCCATAATCCATCTGCAGCAGAGCTCAAGGGGTTGGCAACAGAAGAAGATGTCCAGA 2038
Query 2064 ATTACACCACTATTCGTTATGGCACCAGACCGGCCTTTAGAGAGATATTTGAGTCATTGA 2123
||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 2039 GTTACACCACTATTCGTTATGGCACCAGACCGAACTTTAGAGAGATATTTGCGTCGTTGA 2098
Query 2124 ATGGGAAATGGGGGAGTGTGGATGTTGGAGTGATAGTATGCGGTCCAGCGACTCTTCAGA 2183
||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2099 ATGGGAAATGGGGAAGTGTGGATGTTGGAGTAATAGTATGCGGTCCAGGGACTCTTCAGA 2158
Query 2184 CGACCGTAGCCAAAGAAATACGGTCACATAGCATCTGGCGATCGGCGAATCATCCTCTTT 2243
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2159 CGACCGTAGCCAAAGAGATACGGTCACATAGCATCTGGCGGTCTGCGAATCATCCTCTTT 2218
Query 2244 TCCACTTCAACAGCCACAGTTTCGATCTCTAA 2275
||||||||||||||||||||||||||||||||
Sbjct 2219 TCCACTTCAACAGCCACAGTTTCGATCTCTAA 2250
> Ahg949485 jgi|Araly1|949485|scaffold_801372.1
Length=2266
Score = 3190 bits (1727), Expect = 0.0
Identities = 2098/2274 (92%), Gaps = 37/2274 (2%)
Strand=Plus/Plus
Query 45 AAATTCAAATAAAGATGGATGATTATGAAACCCCTCTTTTGTCCAAGGA--C-tcatcat 101
||||||||| ||| ||||||||| | |||| |||||||||||| ||||| | || |||
Sbjct 7 AAATTCAAAGAAAAATGGATGATCACGAAAGCCCTCTTTTGTCTAAGGAGTCACCACCAT 66
Query 102 catcatcatcTGTGATT-ACTTCATCTTTGAAATGGATATTGAAAGTTGTAATGTCTATG 160
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 67 CATCATCATCAGTG-TTGGTTTCATCTTTGAAATGGATATTGAAAGTTGTAATGTCTGTG 125
Query 161 ATTTTTGTGACTTGGGTTGTTTTTCTTATGATGATGTACCCT-GAACAACTCGGTGATGA 219
||||||||||||||||||| | ||| | | |||||||||||| || | |||||||||| |
Sbjct 126 ATTTTTGTGACTTGGGTTG-TGTTCCT-T-ATGATGTACCCTGGATC-ACTCGGTGATCA 181
Query 220 TTTCCTCAC--A-T---TTG---TCTCCTCCAAGACTTTCCTAGGCACCACAGGAACCAT 270
||||||| | | | |||||||||| ||| || | |||| |||||||| |||
Sbjct 182 AGTCCTCACAAACTGGAGAGAAATCTCCTCCAACACTCTCTTTGGCATCACAGGAAGCAT 241
Query 271 GTTCTTGATTTTCAGTTGTCCGATTCTTGTCATCTCTGTCTTAGCTTCTCTCTATCTCAT 330
||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 242 TTTCTTGATTTTCAGTGGTCCGATTCTTGTCATCGCCGTCTTAGCTTCTCTCTATCTGAT 301
Query 331 TATCTCCGGGGAAGACAAGGTCTTCACTAAGAAGAAGATATCGAAATTCCCGAGGTTTAG 390
|| || |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 302 CATATCAGGGGAAGAGAAGGTTTTCACTAAGAAGAAGATATCGAAGTTCCCGAGGTTTAG 361
Query 391 GCTATGGACATTCCCTGTTCTTGTGGATGGACCATTTGGAGTTGTTTCTGCAGCTGAGTT 450
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCTATGGACATTTCCTGTTCTTGTGGATGGACCATTTGGAGTTGTTTCTGCAGCTGAGTT 421
Query 451 TCTTGGAATTATGGTCTTCTCTGtttttttCCTTTGGTCTATCTATGCTTATACCTTGAG 510
|||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 TCTTGGGATTATGATCTTCTCTGTTTTTTTCCTTTGGGCTATCTATGCTTATACCTTGAG 481
Query 511 GAATCTTGACCTTCTTGAACGCTTCCACGTCCTTCCCAAGAATC-GAAGTATTCTTCTGT 569
|||||| | |||||||| ||||||||| ||||| ||||| | |||||||| ||||||
Sbjct 482 GAATCTCAATGTTCTTGAATACTTCCACGTGCTTCCTAAGAA-CAGAAGTATTTTTCTGT 540
Query 570 TGGAGGTAACGGGTCTGCGTTTAGGAATGATTGGATTGTTGTGTATGGtttttttGTTTC 629
||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 541 TGGAGTTAACCGGTCTGCGTTTTGGGATGATTGGATTGTTGTGTATGGTGTTTTTGTTTC 600
Query 630 TTCCAATCTCGAGAGGTTCCATTCTTCTCCGTCTTATCGATATCCCTTTTGAACATGCTA 689
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 601 TTCCAATCTCGAGAGGCTCCATTCTTCTCCGGCTTATCGATATCCCTTTCGAACATGCTA 660
Query 690 CAAGATATCATGTTTGGCTTGGTCATATCACCATGGCTTTCTTCTCCTTACATGGCCTCT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGATATCATGTTTGGCTTGGTCATATCACCATGGCTTTCTTCTCCTTACATGGCCTCT 720
Query 750 GTTATGTTGTTGGAT-GGATCATTCAAGGTCAACTTTTAGAGCT-TATATTTTCATGGAA 807
||||||||||||||| || | ||||||||||||||||||||||| | ||||| ||||||
Sbjct 721 GTTATGTTGTTGGATGGGCT-ATTCAAGGTCAACTTTTAGAGCTCT-TATTTGAATGGAA 778
Query 808 TGCTATC-GGAATTGCTATCTTACCCGGAGTTATCAGTCTAGTGGCGGGTTTACTGATGT 866
|||| | ||||| ||| | |||||||||||||||||||||||||| |||||||| ||||
Sbjct 779 AGCTA-CTGGAATCGCTGTTTTACCCGGAGTTATCAGTCTAGTGGCTGGTTTACTCATGT 837
Query 867 GGGTCACATCGCTTCACACCGTGAGAAAGAATTACTTTGAGCTCTTCTTCTACACACATC 926
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 GGGTCACGTCCCTTCACACCGTGAGAAAGTTTTACTTTGAGCTCTTCTTCTACACACATC 897
Query 927 AACTATACATCGTCTTTATTGTGTTCTTGGCACTTCATGTTGGTGATTACATGTTTAGTA 986
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 898 AACTATACATCGTCTTTGTTGTGTTCTTGGCACTTCATGTTGGTGACTACTTGTTCAGTA 957
Query 987 TAGTTGCTGGAGGAATATTTCTTTTCATTCTAGACCGCTTCTTGAGGTTCTGCCAATCAA 1046
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 958 TAGTTGCTGGAGGAATATTCCTTTTCATTCTCGACCGCTTCTTGAGGTTCTGCCAATCCA 1017
Query 1047 GAAGGACTGTTGATGTAATCTCTGCAAAGAGTTTACCTTGTGGAACTCTTGAACTAGTCC 1106
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1018 GAAGGACTGTTGATGTAATCTCTGCAAAGAGTTTACCCTGTGGAACTCTGGAACTAGTCC 1077
Query 1107 TTTCAAAACCACCAAATATGCGATACAATGCGCTTAGCTTTATCTTTCTTCAAGTGAGGG 1166
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 TTTCAAAACCACCAAATATGCGATACAATGCTCTTAGCTTTATCTTTCTTCAAGTGAGGG 1137
Query 1167 AACTATCTTGGCTACAATGGCATCCATTT-AGTGTTTCTTCAAGCCCTCTAGATGGGAAC 1225
||||||||||| ||||||||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct 1138 AACTATCTTGGTTACAATGGCATCC-TTTCAGTGTTTCATCAAGTCCTCTAGATGGGAAC 1196
Query 1226 CATCATGTTGCGGTTCTCATAAAGGTTCTTGGTGGATGGACTGCAAAGCTTAGAGACCAG 1285
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1197 CATCATGTTGCGGTTCTCATAAAAGTTCTTGGTGGATGGACCGCAAAGCTTAGAGACCAG 1256
Query 1286 TTGTCAAATCTATACGAGGCAGAGAACCAAGATCAGCTCATTTCTCCTCAGTCATATCCT 1345
|||||||||||||| ||||||||||| ||||| ||||| ||||||||| | ||||||||
Sbjct 1257 TTGTCAAATCTATATGAGGCAGAGAATCAAGACCAGCTTATTTCTCCTGATTCATATCCC 1316
Query 1346 AAAATCACAACTTGTGTGG-AGGGACCTTATGGCCATGAATCTCCATACCATTTAGCGTA 1404
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1317 AAAATCACAACTTGTGTGGAAGGG-CCTTATGGCCATGAATCTCCATACCACTTAGCGTA 1375
Query 1405 TGAGAACCTGGTCTTAGTAGCAGGAGGAATCGGGATTACGCCTTTTTTCGCCATCTTAAG 1464
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1376 CGAGAACCTGGTTTTAGTAGCAGGAGGAATCGGTATTACACCTTTTTTCGCCATCTTAAG 1435
Query 1465 CGATATCCTACACCGTAAAAGAGATGGGAAAGCTTGTTTACCTAGTAAGGTTTTAGTTGT 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TGATATCCTACACCGTAAAAGAGATGGGAAAGCTTGTTTACCTAGTAAGGTTTTAGTTGT 1495
Query 1525 ATGGGCCATTAAAAACTCAGACGAGCTCTCTCTGCTCTCAGCAATTGACATACCTTCCAT 1584
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1496 ATGGGCCATTAAAAACTCAGACGAGCTCTCTCTACTCTCAGCAATCGACATACCTTCCAT 1555
Query 1585 TTGCCCTTTCTTCTCTAAGAAACTAAACCTTGAGATTCACATATATATCACTCGACAATC 1644
|||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 1556 TTGCCCTTTCTTCTCTAAGAAACTAAGCCTTGAGATTCACGTATATGTCACTCGACAATC 1615
Query 1645 CGAGCCTCGCTTGGAAGATGGGATGGTTCACAAGGTGGTGCATCCTTCTGTCAAGCTACC 1704
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 1616 CGAGCCTCGCTTGGAAGATGGGATGGTTCACAAGGTTGTGCATCCTTCTGTCAAACCACC 1675
Query 1705 ACGGACCAACGGATGTTCTATGTCGGTACTAGTTGGTACAGGGGATAACATATGGTCTGG 1764
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ACGGACCAACGGATGTTCCATGTCGGTACTAGTTGGTACAGGGGATAACATATGGTCTGG 1735
Query 1765 ACTCTATCTAATTATATCCACCATTGGATTTATTTCAATGATCACATTGTTGGACATCTT 1824
||||||||||||| | ||||||||||| |||||| ||||||||||||| |||||| ||||
Sbjct 1736 ACTCTATCTAATTGTCTCCACCATTGGGTTTATTGCAATGATCACATTTTTGGACGTCTT 1795
Query 1825 TTACATAAA-AAGATACAACATAACAACGTGGTGGTACAAGGGACTTCTATTTGTTGGTT 1883
||||||||| || |||||||||||| |||||||||||||| |||||||||||| ||| ||
Sbjct 1796 TTACATAAACAA-ATACAACATAACGACGTGGTGGTACAAAGGACTTCTATTTATTGTTT 1854
Query 1884 GTATGGTTGCAAGTGTCTTGATTTTTGGAGGTCTTGTGGTTGTTTTCTGGCATCGCTGGG 1943
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1855 GTATGGTTGCAAGTGTGTTGATTTTTGGAGGCCTTGTGGTTGTTTTCTGGCATCGTTGGG 1914
Query 1944 AACACAAAACCGGTGAAGTGGAAGCAAATGGCAACGACAAGGTAGATTTGAATGGAGAAG 2003
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1915 GTCACAAAACCGGTAAAGTGGAAGCAAATGGCAATGACAAGGTATATTTGAATGGAGAAG 1974
Query 2004 AAACCCATAATCCATCTGCAGCAGAGCTTAAGGGCTTGG-CAATAGAAGAAGATGTCCAG 2062
|||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||
Sbjct 1975 AAACCCATAATCCATCTGCAGCAGTGCTCAAGGGCTTGGACA-TAGAAGAAGATGTCCA- 2032
Query 2063 AA-TTACACCACTATTCGTTATGGCACCAGACCGGCCTTTAGAGAGATATTTGAGTCATT 2121
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2033 AAGTTACACCACTATTCGTTATGGAACCAGACCGGCCTTTAGAGAGATATTTGAGTCATT 2092
Query 2122 GAATGGGAAATGGGGGAGTGTGGATGTTGGAGTGATAGTATGCGGTCCAGCGACTCTTCA 2181
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 2093 GAATGGGAAATGGGGAAGTGTGGATGTTGGAGTAATAGTGTGTGGTCCAGCGACTCTTCA 2152
Query 2182 GACGACCGTAGCCAAAGAAATACGGTCACATAGCATCTGGCGATCGGCGAATCATCCTCT 2241
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2153 AACGACCGTAGCCAAAGAGATACGATCACATAGCATCTGGCGATCAGCGAATCATCCTCT 2212
Query 2242 TTTCCACTTCAACAGCCACAGTTTCGATCTCTAACGATGCTTTCAAGGCCAAAG 2295
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2213 TTTCCACTTCAACAGCCACAGTTTCGATCTATAACTATGCTTTCAAGGCCAAAG 2266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95339883235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5