BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49910.1
Length=2387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495046 jgi|Araly1|495046|fgenesh2_kg.8__862__AT5G49910.1 3834 0.0
Ahg492423 jgi|Araly1|492423|fgenesh2_kg.7__1856__AT4G24280.1 2170 0.0
Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1 113 5e-24
Ahg314911 jgi|Araly1|314911|fgenesh1_pm.C_scaffold_1003691 84.2 4e-15
> Ahg495046 jgi|Araly1|495046|fgenesh2_kg.8__862__AT5G49910.1
Length=2339
Score = 3834 bits (2076), Expect = 0.0
Identities = 2268/2358 (96%), Gaps = 23/2358 (1%)
Strand=Plus/Plus
Query 30 GGTTTTATCAATCTCTCATT-TCCA-ACCATGGCTTCCTCCGCCGCCCAAATTCACATCC 87
|||||| |||||||||| || |||| | |||||||||||||||||||||||||||||||
Sbjct 1 GGTTTTTTCAATCTCTC-TTCTCCAGA-AATGGCTTCCTCCGCCGCCCAAATTCACATCC 58
Query 88 TCGGCGGAATCGGATTCCCTACTTCGTCTTCTTCCTCCTCCACCAAAAACCTCGACAACA 147
||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 59 TCGGCGGAATCGGATTCCCTA-------------CT--TCCGGCAAAAACCTCGACAACA 103
Query 148 AAACCAATTCCATTCCACGAAGCGTCTTCTTCGGCAACAGAACAAGTCCTTTCACTACTC 207
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 104 AAACCAATTCCATTCCACGAAGCGTCTTCTTCGGCAACAGAACAAGTCCTTTCTCTACTC 163
Query 208 CAACCTCCGCCTTCCTTCGTATGGGACGAAGAAACAACAACGCTTCCCGATACACCGTTG 267
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 164 CAACCTCCGCCTTCCTTCGTATGGGACGAAGAAACAACAACGCTTCCCGTTACACCGTTG 223
Query 268 GTCCAGTCCGTGTGGTTAACGAGAAAGTCGTCGGAATCGATTTAGGCACGACGAATTCAG 327
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 224 GTCCAGTCCGTGTTGTTAACGAGAAAGTCGTCGGAATCGATTTAGGTACGACGAACTCAG 283
Query 328 CTGTTGCTGCTATGGAAGGAGGTAAACCAACGATTGTGACTAACGCTGAAGGTCAAAGAA 387
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CCGTAGCTGCTATGGAAGGAGGTAAACCAACGATTGTGACTAACGCTGAAGGTCAAAGAA 343
Query 388 CTACACCTTCTGTTGTGGCTTATACTAAGAGTAAAGATAGACTTGTTGGTCAGATTGCTA 447
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 344 CTACGCCTTCTGTTGTTGCTTATACTAAGAGTAAAGATAGACTTGTTGGTCAGATTGCGA 403
Query 448 AACGTCAAGCTGTTGTTAATCCGGAGAATACTTTCTTCTCTGTTAAGAGGTTTATTGGTA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 AACGTCAAGCTGTTGTTAATCCGGAGAATACTTTCTTCTCTGTTAAGAGGTTTATTGGTA 463
Query 508 GAAGAATGAATGAAGTTGCTGAAGAGTCTAAGCAGGTTTCTTATAGAGTTATTAAAGATG 567
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 464 GGAGAATGAATGAAGTTGCTGAAGAGTCGAAGCAGGTTTCTTATAGAGTTATTAAAGATG 523
Query 568 AGAATGGTAATGTTAAGCTTGATTGTCCTGCTATTGGTAAACAATTTGCTGCTGAGGAGA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGAATGGTAATGTTAAGCTTGATTGTCCTGCTATTGGTAAACAATTTGCTGCTGAGGAGA 583
Query 628 TTTCTGCTCAGGTTTTGAGGAAGCTTGTGGATGATGCTTCGAGATTTTTGAATGATAAAG 687
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 584 TTTCTGCTCAGGTTTTGAGGAAGCTTGTGGATGATGCTTCGAGATTCTTGAATGATAAAG 643
Query 688 TAACGAAAGCTGTCATCACTGTGCCTGCTTACTTCAATGATTCACAAAGGACGGCTACTA 747
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 644 TAACCAAAGCTGTTATCACTGTGCCTGCTTACTTCAATGATTCACAGAGGACAGCTACTA 703
Query 748 AAGATGCTGGTCGTATTGCTGGATTGGAAGTTCTTAGGATTATTAATGAGCCTACTGCTG 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AAGATGCTGGTCGTATTGCTGGATTGGAAGTTCTTAGGATTATTAATGAGCCTACTGCTG 763
Query 808 CTTCTTTGGCTTATGGGTTTGAGAGGAAAAGCAATGAAACTATTCTTGTTTTTGATCTTG 867
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 764 CTTCTTTGGCTTATGGGTTTGAGAGGAAAAGCAATGAAACTATTCTTGTCTTTGATCTTG 823
Query 868 GTGGTGGTACTTTTGATGTCTCAGTCCTTGAGGTTGGTGACGGTGTTTTTGAAGTGCTTT 927
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 824 GTGGTGGTACCTTCGATGTCTCAGTCCTTGAGGTTGGTGATGGTGTTTTTGAAGTGCTTT 883
Query 928 CGACTTCTGGTGATACACATTTGGGAGGTGATGACTTTGACAAGAGAGTCGTTGATTGGC 987
| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 884 CTACATCTGGTGATACACATTTGGGAGGTGATGACTTTGACAAGAGAGTTGTTGATTGGC 943
Query 988 TTGCTTCAACCTTCAAGAAGGATGAAGGTATAGATCTTCTCAAAGACAAGCAAGCGCTTC 1047
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTGCTTCAACTTTCAAGAAAGATGAAGGTATAGATCTTCTCAAAGACAAGCAAGCGCTTC 1003
Query 1048 AGAGGTTGACGGAGGCAGCTGAAAAAGCTAAAATTGAGCTTTCCTCACTGACTCAGACAA 1107
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AGAGGTTAACTGAGGCAGCTGAAAAAGCTAAAATTGAGCTTTCCTCACTGACTCAGACAA 1063
Query 1108 ACATGAGTTTGCCTTTTATCACTGCAACGGCTGATGGGCCTAAGCACATTGAAACCACTC 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1064 ACATGAGTTTGCCTTTTATCACTGCAACGGCTGATGGGCCTAAGCACATTGAAACTACTC 1123
Query 1168 TCACCAGGGGCAAGTTTGAAGAATTGTGCTCTGACTTACTCGACAGGGTCAGGACACCTG 1227
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 TCACCCGGGCCAAGTTTGAAGAATTGTGCTCTGACTTACTCGACAGGGTCAGGACACCTG 1183
Query 1228 TGGAGAATTCCCTGAGGGATGCAAAACTCAGCTTCAAAGATATTGATGAGGTGATCCTTG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGGAGAATTCCCTGAGGGATGCAAAACTCAGCTTCAAAGATATTGATGAGGTGATCCTTG 1243
Query 1288 TTGGTGGATCCACACGTATCCCTGCTGTTCAGGATCTTGTAAGGAAGCTGACAGGAAAAG 1347
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1244 TTGGTGGATCCACACGTATTCCTGCTGTTCAGGAACTTGTAAGGAAGCTGACAGGGAAAG 1303
Query 1348 AACCCAATGTCTCAGTCAATCCTGATGAAGTTGTAGCTTTAGGTGCTGCAGTTCAGGCCG 1407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1304 AACCCAATGTCTCAGTCAATCCTGATGAAGTTGTAGCTTTAGGTGCTGCAGTTCAGGCTG 1363
Query 1408 GTGTTCTATCAGGAGATGTGAGTGACATTGTTCTTCTTGATGTGACGCCGCTATCGCTTG 1467
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1364 GTGTTCTATCTGGAGATGTGAGTGACATTGTTCTTCTTGATGTGACGCCGTTATCGCTTG 1423
Query 1468 GTTTGGAAACTCTTGGTGGTGTCATGACCAAGATCATTCCAAGAAACACCACACTTCCAA 1527
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1424 GTTTGGAAACTCTTGGTGGTGTCATGACCAAGATTATACCAAGAAACACCACACTTCCAA 1483
Query 1528 CTTCTAAGTCAGAAGTCTTCTCAACTGCTGCAGATGGACAGACAAGCGTTGAGATTAATG 1587
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1484 CTTCTAAGTCAGAAGTCTTCTCAACCGCTGCAGATGGACAGACAAGCGTTGAGATTAATG 1543
Query 1588 TGTTACAGGGTGAGAGAGAGTTCGTAAGAGATAACAAGTCTATTGGTAGCTTCCGTCTTG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TGTTACAGGGTGAGAGAGAGTTCGTAAGAGATAACAAGTCTATTGGTAGCTTCCGTCTTG 1603
Query 1648 ATGGTATTCCACCTGCACCACGTGGAGTTCCACAAATCGAGGTCAAATTCGACATTGATG 1707
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 ATGGTATTCCGCCTGCACCACGTGGAGTTCCACAAATCGAGGTCAAATTCGACATTGATG 1663
Query 1708 CCAATGGAATTCTATCTGTCAGTGCTTCGGACAAAGGTACAGGAAAGAAGCAGGACATCA 1767
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1664 CCAATGGAATTCTATCTGTCAGTGCTTCGGACAAAGGCACAGGAAAGAAGCAGGACATCA 1723
Query 1768 CCATTACTGGTGCTAGTACCTTACCAAAGGATGAGGTAGACACAATGGTGCAAGAAGCAG 1827
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1724 CCATTACTGGTGCTAGTACCTTGCCTAAGGATGAGGTAGACACAATGGTGCAAGAAGCAG 1783
Query 1828 AGAGGTTTGCAAAGGAAGACAAAGAAAAGAGAGATGCGATTGACACAAAGAACCAGGCTG 1887
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1784 AGAGGTTTGCAAAGGAAGACAAAGAAAAGAGAGATGTGATTGACACAAAGAACCAGGCTG 1843
Query 1888 ACTCCGTCGTTTACCAGACAGAGAAGCAGCTTAAAGAACTTGGAGAGAAAATTCCAGGTC 1947
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 ATTCCGTAGTTTACCAGACGGAGAAGCAGCTTAAAGAACTTGGAGAGAAAATTCCAGGTC 1903
Query 1948 CAGTGAAAGAAAAGGTTGAGGCTAAGCTCCAAGAGCTGAAGGAGAAGATAGCAAGCGGAT 2007
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1904 CAGTGAAAGAAAAGGTTGAGGCTAAGCTCCAAGAGCTGAAGGAAAAGATAGGAAGCGGAT 1963
Query 2008 CAACTCAAGAAATCAAAGACACCATGGCAGCTCTTAACCAAGAAGTGATGCAGATTGGCC 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1964 CAACTCAAGAAATCAAAGACACCATGGCAGCTCTTAACCAAGAAGTGATGCAGATTGGCC 2023
Query 2068 AGTCTCTGTACAACCAACCCCAACCAGGTGGTGCTGATTCTCCTCCTGGAGGTGAAGCTT 2127
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2024 AGTCTCTGTACAACCAACCCCAACCAGGTGGTGCTGGTTCTCCTCCTGGAGGTGAAGCTT 2083
Query 2128 CCTCGTCGTCTGACACATCATCCTCAGCCAAAGGTGGAGACAACGGCGGTGATGTGATTG 2187
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2084 CCTCGTCGTCTGACTCATCATCTTCAGCCAAAGGTGGAGACAACGGTGGTGATGTGATTG 2143
Query 2188 ACGCTGACTTCACAGACAGCAATTAATACGAATTGGATTCATACAAGGATTATTTATGGG 2247
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 2144 ACGCTGACTTCACAGACAGCAAATAATACAAATTGGATTCATACAAGGATTATTTCTGGG 2203
Query 2248 GTTTGTCCATGATTTTGTAGGAATGATAATGTGATTTGTTGGCAGCAAATGAATGGTAAG 2307
||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 2204 GTTTGTCCATGATTTTGTAGGAAGGATAATGTGATTTGTGGGCAACAAATGAATGGTAAG 2263
Query 2308 AGTCAAATTTTGTCTTTTTAAACACATGAT-TGAAGCAATATTCTGGAGCACATATTGTC 2366
||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 2264 AGTCAAATTTTGTCTTTTTAAACACAT-ACGTGAAGCAATATTCTGGAGAACATATTGTC 2322
Query 2367 GATA-AATGCAGTGTTGT 2383
||| || ||||||||||
Sbjct 2323 CATAGAA-GCAGTGTTGT 2339
> Ahg492423 jgi|Araly1|492423|fgenesh2_kg.7__1856__AT4G24280.1
Length=2340
Score = 2170 bits (1175), Expect = 0.0
Identities = 1761/2045 (86%), Gaps = 36/2045 (2%)
Strand=Plus/Plus
Query 57 ATGGCTTCCTCCGCCGCCCAAATTCACATCCTCGGCGGAATCGGATTCCCTACTTCGTCT 116
||||| || |||||||||||||||||| |||| |||||||| ||||| | |||| |||
Sbjct 6 ATGGCATCTTCCGCCGCCCAAATTCACGTCCTTGGCGGAATTGGATT--C-GCTTCTTCT 62
Query 117 TCTTCCTCCTCCACCAAAAACCTCGACAACAAAACCAATTCC---ATTCC-ACGAAGCGT 172
|||| || |||| | ||| || | ||| | | || || || | |||| |
Sbjct 63 TCTT-CT--TCCAAGAGAAATCTTAATGGTAAAGGCGGTACCTTTATGCCGA-GAAGTGC 118
Query 173 CTTCTTCGGCAAC-AGAACAAGTCCTTTCACTACTCCAACCTCCGCCTTCCTTC-GTATG 230
||||||||| || ||||| |||||||| | || || || || || || | || | |||
Sbjct 119 CTTCTTCGG-TACAAGAACCGGTCCTTTCTCAACACCCACTTCTGCTTTTC-TCAGAATG 176
Query 231 GG-ACGAAGAAA---CAACAACGCTTCCCGATACACCGTTGGTCCAGTCCGTGTGGTTAA 286
|| || ||||| | | |||||| ||||| | |||||||| || |||||||||||
Sbjct 177 GGCAC-CAGAAATGGCGGCGGCGCTTCTAGATACGCGGTTGGTCCGGTTCGTGTGGTTAA 235
Query 287 CGAGAAAGTCGTCGGAATCGATTTAGGCACGACGAATTCAGCTGTTGCTGCTATGGAAGG 346
|||||| || || ||||| ||||| || ||||| || || || |||||||||||||||||
Sbjct 236 CGAGAAGGTTGTTGGAATTGATTTGGGTACGACTAACTCCGCCGTTGCTGCTATGGAAGG 295
Query 347 AGGTAAACCAACGATTGTGACTAACGCTGAAGGTCAAAGAACTACACCTTCTGTTGTGGC 406
|||||| || |||||||| ||||||||||||||||| || || || || ||||| |||||
Sbjct 296 AGGTAAGCCTACGATTGTTACTAACGCTGAAGGTCAGAGGACGACGCCGTCTGTGGTGGC 355
Query 407 TTATACTAAGAGTAAAGATAGACTTGTTGGTCAGATTGCTAA-ACGTCAAGCTGTTGTTA 465
||| || |||||| ||||| |||||||| |||||||| || | | |||||||||||||
Sbjct 356 TTACACGAAGAGTGGTGATAGGCTTGTTGGGCAGATTGCGAAGA-GGCAAGCTGTTGTTA 414
Query 466 ATCCGGAGAATACTTTCTTCTCTGTTAAGAGGTTTATTGGTA-GAAGAATGAATGAAGTT 524
|||| ||||||||||||||||| || |||||||||||||||| |||| |||||||| |||
Sbjct 415 ATCCCGAGAATACTTTCTTCTCCGTGAAGAGGTTTATTGGTAGGAAG-ATGAATGAGGTT 473
Query 525 GCTGAAGAGTCTAAGCAGGTTTCTTATAGAGTTATTAAAGATGAGAATGGTAATGTTAAG 584
||||| ||||||||||||||||||||||||||| ||| ||||||||| || |||||||||
Sbjct 474 GCTGAGGAGTCTAAGCAGGTTTCTTATAGAGTTGTTAGAGATGAGAACGGGAATGTTAAG 533
Query 585 CTTGATTGTCCTGCTATTGGTAAACAATTTGCTGCTGAGGAGATTTCTGCTCAGGTTTTG 644
|||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 534 TTTGAGTGTCCTGCCATTAACAAACAATTTGCTGCTGAGGAGATTTCAGCTCAGGTTTTG 593
Query 645 AGGAAGCTTGTGGATGATGCTTCGAGATTTTTGAATGATAAAGTAACGAAAGCTGTCATC 704
||||| |||||||||||||| || ||||| ||||| || |||||||| || ||||||||
Sbjct 594 AGGAAACTTGTGGATGATGCCTCAAGATTCTTGAACGACAAAGTAACCAAGGCTGTCATT 653
Query 705 ACTGTGCCTGCTTACTTCAATGATTCACAAAGGACGGCTACTAAAGATGCTGGTCGTATT 764
|||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||| |||
Sbjct 654 ACTGTGCCTGCTTACTTCAACGACTCACAGAGGACAGCTACAAAAGATGCTGGTCGAATT 713
Query 765 GCTGGATTGGAAGTTCTTAGGATTATTAATGAGCCTACTGCTGCTTCTTTGGCTTATGGG 824
||||| |||||||||||| | |||||||||||||| || |||||||| ||||||||||||
Sbjct 714 GCTGGGTTGGAAGTTCTTCGTATTATTAATGAGCCCACAGCTGCTTCGTTGGCTTATGGG 773
Query 825 TTTGAGAGGAAAAGCAATGAAACTATTCTTGTTTTTGATCTTGGTGGTGGTACTTTTGAT 884
||||| || |||||||||||||| || || || |||||||||||||| ||||| ||||||
Sbjct 774 TTTGACAGAAAAAGCAATGAAACAATCCTAGTCTTTGATCTTGGTGGCGGTACCTTTGAT 833
Query 885 GTCTCAGTCCTTGAGGTTGGTGACGGTGTTTTTGAAGTGCTTTCGACTTCTGGTGATACA 944
|||||||| |||||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct 834 GTCTCAGTGCTTGAGGTTGGTGATGGTGTGTTTGAAGTGCTTTCCACTTCTGGGGACACA 893
Query 945 CATTTGGGAGGTGATGACTTTGACAAGAGAGTCGTTGATTGGCTTGCTTCA-ACCTTCAA 1003
|||||||| ||||||||||| ||||||||||| ||||||||||||||| || | |||||
Sbjct 894 CATTTGGGTGGTGATGACTTCGACAAGAGAGTGGTTGATTGGCTTGCTGCAGA-ATTCAA 952
Query 1004 GAAGGATGAAGGTATAGATCTTCTCAAAGACAAGCAAGCGCTTCAGAGGTTGACGGAGGC 1063
||| |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 953 GAAAGATGAAGGGATAGATCTTCTGAAAGACAAGCAAGCACTTCAGAGGTTAACAGAGGC 1012
Query 1064 AGCTGAAAAAGCTAAAATTGAGCTTTCCTCACTGACTCAGACAAACATGAGTTTGCCTTT 1123
||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct 1013 AGCAGAAAAAGCTAAAATTGAGCTTTCCTCGCTGACTCAGACAAATATGAGCTTGCCATT 1072
Query 1124 TATCACTGCAACGGCTGATGGGCCTAAGCACATTGAAACCACTCTCACCA-GGGGCAAGT 1182
|||||| || || || ||||| ||||| ||||| |||||||| |||| || | | |||||
Sbjct 1073 TATCACCGCCACAGCCGATGGACCTAAACACATAGAAACCACCCTCA-CACGTGCCAAGT 1131
Query 1183 TTGAAGAATTGTGCTCTGACTTACTCGACAGGGTCAGGACACCTGTGGAGAATTCCCTGA 1242
| ||||||||||| || || ||||| |||||||||| ||| || || || ||||||||||
Sbjct 1132 TCGAAGAATTGTGTTCAGATTTACTTGACAGGGTCAAGACTCCCGTCGAAAATTCCCTGA 1191
Query 1243 GGGATGCAAAACTCAGCTTCAAAGATATTGATGAGGTGATCCTTGTTGGTGGATCCACAC 1302
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1192 GGGATGCAAAGCTCAGCTTCAAAGATATTGATGAAGTTATCCTTGTTGGTGGATCCACAC 1251
Query 1303 GTATCCCTGCTGTTCAGGATCTTGTAAGGAAGCTGACAGGAAAAGAACCCAATGTCTCAG 1362
|||| ||||||||||| || || || |||||| |||| || |||||||| |||||| |||
Sbjct 1252 GTATTCCTGCTGTTCAAGAACTCGTGAGGAAGGTGACTGGGAAAGAACCGAATGTCACAG 1311
Query 1363 TCAATCCTGATGAAGTTGTAGCTTTAGGTGCTGCAGTTCAGGCCGGTGTTCTAT-CAGGA 1421
| ||||||||||| ||||||||||||||||||||||| ||||| ||||| || | | |||
Sbjct 1312 TAAATCCTGATGAGGTTGTAGCTTTAGGTGCTGCAGTCCAGGCTGGTGTGCT-TGCCGGA 1370
Query 1422 GATGTGAGTGACATTGTTCTTCTTGATGTGACGCCGCTATCGC-TTGGTTTGGAAACTCT 1480
||||||||||||||||| ||||| |||||||| ||||| || | |||||||||| || ||
Sbjct 1371 GATGTGAGTGACATTGTGCTTCTCGATGTGACACCGCTTTC-CATTGGTTTGGAGACCCT 1429
Query 1481 TGGTGGTGTCATGACCAAGATCATTCCAAGAAACACCACACTTCCAACTTCTAAGTCAGA 1540
||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| |||||
Sbjct 1430 TGGTGGTGTTATGACTAAGATTATTCCAAGGAACACCACACTGCCTACTTCTAAATCAGA 1489
Query 1541 AGTCTTCTCAACTGCTGCAGATGGACAGACAAGCGTTGAGATTAATGTGTTACAGGGTGA 1600
|||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1490 AGTCTTTTCAACTGCTGCTGATGGACAGACAAGTGTTGAGATTAATGTGTTGCAGGGTGA 1549
Query 1601 GAGAGAGTTCGTAAGAGATAACAAGTCTATTGGTAGCTTCCGTCTTGATGGTATTCCACC 1660
||| ||||| || || |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1550 GAGGGAGTTTGTTAGGGATAACAAGTCTCTTGGTAGCTTCCGTCTAGATGGTATTCCACC 1609
Query 1661 TGCACCACGTGGAGTTCCACAAATCGAGGTCAAATTCGACATTGATGCCAATGGAATTCT 1720
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 1610 GGCACCACGTGGAGTTCCACAAATCGAAGTCAAATTTGACATTGATGCCAATGGAATTTT 1669
Query 1721 ATCTGTCAGTGCT-TCGGACAAAGGTACAGGAAAGAAGCAGGACATCACCATTACTGGTG 1779
||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||| |
Sbjct 1670 ATCTGTCAGTGCTGT-TGACAAGGGCACAGGAAAGAAGCAAGACATCACCATTACTGGCG 1728
Query 1780 CTAGTACCTTACCAAAGGATGAGGTAGA-CACAATGGTGCAAGAAGCAGAGAGGTTTGCA 1838
| ||||| || || |||||||||||||| || |||||| || |||||||| || ||||||
Sbjct 1729 CGAGTACATTGCCCAAGGATGAGGTAGACCA-AATGGTCCAGGAAGCAGAAAGATTTGCA 1787
Query 1839 AAGGAAGACAAAGAAAAGAGAGATGCGATTGACACAAAGAACCAGGCTGACTCCGTCGTT 1898
||||| ||||| || ||||||||||| || ||||||||||||||||| ||||| || ||
Sbjct 1788 AAGGATGACAAGGAGAAGAGAGATGCAATCGACACAAAGAACCAGGCAGACTCAGTGGTG 1847
Query 1899 TACCAGACAGAGAAGCAGCTTAAAGAACTTGGAGAGAAAATTCCAGGTCCAGTGAAAGAA 1958
|| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 1848 TATCAGACAGAGAAGCAACTGAAAGAACTTGGAGAGAAAATTCCAGGTGAAGTGAAAGAG 1907
Query 1959 AAGGTTGAGGCTAAGCTCCAAGAGCTGAAGGAGAAGATAGCAAGCGGATCAACTCAAGAA 2018
||||| ||||||||||| ||||||||||| || ||||||| ||||| ||||||||| |||
Sbjct 1908 AAGGTGGAGGCTAAGCTACAAGAGCTGAAAGACAAGATAGGAAGCGAATCAACTCAGGAA 1967
Query 2019 ATCAAAGACACCATGGCAGCTCTTAACCAAGAAGTGATGCAGATTGGCCAGTCTCTGTAC 2078
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1968 ATCAAAGACGCCATGGCTGCTCTTAACCAAGAAGTGATGCAGATTGGTCAGTCTCTATAC 2027
Query 2079 AACCA 2083
|||||
Sbjct 2028 AACCA 2032
> Ahg493781 jgi|Araly1|493781|fgenesh2_kg.7__3214__AT5G42020.1
Length=2359
Score = 113 bits (61), Expect = 5e-24
Identities = 213/284 (75%), Gaps = 19/284 (7%)
Strand=Plus/Plus
Query 696 GCTGTCATCACTGTGCCTGCTTACTTCAATGATTCACAAAGGAC-GGCTACTAAAGATGC 754
||||| ||||||| || ||||||||||| ||| |||||||| | ||||| || |||||
Sbjct 684 GCTGTTGTCACTGTTCCAGCTTACTTCAACGATGCACAAAGG-CAAGCTACCAAGGATGC 742
Query 755 TGGTCG-TATTGCTGGATTGGAA-GTT-CTTAGGATTATTAATGAGCCTACTGCTGCTTC 811
||| | ||||||||| | || ||| | || || || || || |||||||||||| |
Sbjct 743 CGGT-GTTATTGCTGGGCT-CAATGTTGC-GAGAATCATCAACGAACCTACTGCTGCTGC 799
Query 812 T-TTGGCTTATGGGT-TTGAGAGGAAAAGCAAT--G-A-AACTATTCTTGTTTTTGATCT 865
| || || || ||| |||| | ||| | | | | ||| || ||||| ||||||||
Sbjct 800 TATT-GCCTA-CGGTCTTGACAAGAAGGGTGGTGAGAAGAAC-ATCCTTGTCTTTGATCT 856
Query 866 TGGTGGTGGTACTTTTGATGTCTCAGTCCTTGAGG-TTGGTGACGGTGTTTTTGAAGTGC 924
|||||||||||||||||||||| ||| |||| ||| | |||| || || || || |
Sbjct 857 TGGTGGTGGTACTTTTGATGTCAGTGTC-TTGACCATTGATAACGGAGTGTTCGAGGTTC 915
Query 925 TTTCGACTTCTGGTGATACACATTTGGGAGGTGATGACTTTGAC 968
| || || |||||| || || ||||||||||| |||||||||
Sbjct 916 TCTCCACAAATGGTGACACTCACTTGGGAGGTGAGGACTTTGAC 959
> Ahg314911 jgi|Araly1|314911|fgenesh1_pm.C_scaffold_1003691
Length=1821
Score = 84.2 bits (45), Expect = 4e-15
Identities = 115/146 (79%), Gaps = 16/146 (11%)
Strand=Plus/Plus
Query 692 GAAAGCTGTCATCACTGTGCCTGCTTACTTCAATGATTCACAAAGGAC-GGCTACTAAA- 749
||| ||||| ||||||| ||||||||||||||||| || | || | | ||||| |||
Sbjct 432 GAACGCTGTGGTCACTGTTCCTGCTTACTTCAATGACTCTC-AACGTCAAGCTAC-AAAG 489
Query 750 GATGCTGGTCGT-ATTGCTGGATTGGAA-GTTCTTAG-G-ATTATTAATGAGCCTACTGC 805
|| |||||| || |||||||| || ||| ||| || | | || || || |||||||||||
Sbjct 490 GACGCTGGT-GTGATTGCTGG-TTTGAATGTT-TT-GCGTATCATCAACGAGCCTACTGC 545
Query 806 TGCTTCT-TTGGCTTATGGGT-TTGA 829
|||| || || |||||| ||| ||||
Sbjct 546 TGCTGCTATT-GCTTAT-GGTCTTGA 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89931068445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5