BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49945.1 Length=1854 Score E Sequences producing significant alignments: (Bits) Value Ahg331396 jgi|Araly1|331396|fgenesh1_pm.C_scaffold_8000739 2183 0.0 Ahg929910 jgi|Araly1|929910|scaffold_302367.1 182 1e-44 > Ahg331396 jgi|Araly1|331396|fgenesh1_pm.C_scaffold_8000739 Length=2124 Score = 2183 bits (1182), Expect = 0.0 Identities = 1343/1420 (95%), Gaps = 14/1420 (1%) Strand=Plus/Plus Query 47 CTCTTCCTCCATTATCGTATTATCGTAGCTTCTCCATTCGAAGGATTTGATGCTGAAGAA 106 |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| Sbjct 709 CTCTTCCTCCATTATCGTATCATCGTAGCTTCACAATTCGAAGGATTTGATGCTGAAGAA 768 Query 107 GACGACGTTACCGACGAttcctctcaccttcttcaccactcactccctccgcctcttctc 166 ||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 769 GACGATGTTTCCGACGATTCCTCTCACCTTCCTCACCACTCCCTCCCTCCGCCTCTTCTC 828 Query 167 actcagtctcactcatcactctcCGATC-----CC-GATCCGGAGCCGGAACCTTCTTCC 220 |||||||||||||||||||||||||||| || || ||||| |||||| ||||||| Sbjct 829 ACTCAGTCTCACTCATCACTCTCCGATCTGGAACCGGAACCGGAACCGGAATCTTCTTCT 888 Query 221 GCCGAATGTAAATCCGATCTCATCACTGAATCAGATCTCGAGCATCAATCCGATTCGAAA 280 ||||||| ||| || ||||||||| |||||||||||| ||||||| |||||||||||| | Sbjct 889 GCCGAATCTAACTCTGATCTCATCTCTGAATCAGATCCCGAGCATGAATCCGATTCGAGA 948 Query 281 ACTCCCTCGTCTACACCATTTGAGTACTGGGACGAAGACGAGTTCGAAGGACTACCAG-T 339 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | | Sbjct 949 ACTCCCTCGTCTACGCCATTTGAGTACTGGGACGAAGACGAGTTCGAGGGACTACC-GAT 1007 Query 340 TGAGATAGAGACACTTGAATCTCCATTGATTACAGAAAACGGAACTCATGCTGATCCAAA 399 ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| Sbjct 1008 TGAGATAGAGACACTTGAATCTCCATTGATTGCAGAAAACGCAACTCATACTGATCCAAA 1067 Query 400 GACGCCAGATCTCAAGACTTCATCGGAAGCTCAAGGAG-ACACTAATGATCAAACGAAGA 458 ||||| |||||||||||||||||||||| |||||| || | |||| |||||| | ||||| Sbjct 1068 GACGCTAGATCTCAAGACTTCATCGGAACCTCAAGAAGTA-ACTACTGATCAGATGAAGA 1126 Query 459 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTCTG-TTTCTTAATCGCACTCGCAATC 517 ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 1127 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTC-GTTTTCTTAATCGCTCTCGCAATC 1185 Query 518 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCATTAGCTTGGGCGGCGAAATTT 577 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1186 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCTTTAGCTTGGGCGGCGAAATTC 1245 Query 578 GCTTCTAAGGATACAATATTCCAGAAGAATTTTAGTATGCTTGGAGTTAGTGAATTAGAG 637 ||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1246 GCTTCCAAGGGTACTATATTCCAGAAGAATTTTAGTTTGCTTGGAGTTAGTGAAGGAGAG 1305 Query 638 GATTCGCCATTGTTGTTAAAAGAAGCCTTAAATGTGTTCAAATTCTACGCGAGTGGTCGT 697 ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1306 GATTCGCCATTGTTGTTGAAAGAAGCGTTAAATGTGTTTAAATTCTACGCGAGTGGTCGT 1365 Query 698 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1366 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 1425 Query 758 AGGGTGTTTAATTTGGTTGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 817 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1426 AGGATGTTTAATTTGGTGGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 1485 Query 818 GAAGAAACTATGGATCATGTTGTGTTTGCTATGACGAAGAAGAAGGCTGCAAAAACTATG 877 ||||| ||||||||||||||||||||||| ||| ||| ||| |||||||| ||||||||| Sbjct 1486 GAAGATACTATGGATCATGTTGTGTTTGCGATGGCGAGGAAAAAGGCTGCGAAAACTATG 1545 Query 878 CAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATTGTGTCTCCTCCTGCTGGAAGG 937 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| Sbjct 1546 CAAAAGGAGATGAGGGATTTGCAGAGATTCACTGGGATTGTGTCTCCTCCTGCTGGGAGG 1605 Query 938 AAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATCCAAGGAAGTTGCTGCGGATTT 996 |||||||||||||||||||| | || |||||||||||||||||||||||||||||||| | Sbjct 1606 AAATGGGTGTCGGAGGAGTTAG-CTGTGATCTCTGAATCCAAGGAAGTTGCTGCGGATAT 1664 Query 997 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1665 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1724 Query 1057 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1725 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1784 Query 1117 TTTCAAGTTTTCTTTACCTGATGCTAAACATATGGATGATATTGTCCGGTTGGTGGCGCT 1176 |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1785 TTTCAAGTTTTCCTTACCCGATGCTAAACATATGGATGATATTGTCCGCTTGGTGGCGCT 1844 Query 1177 AATTCCATATTACATCGACTTAGTAGGACGATACAGACTCAGCTCGCAGGCGCGGAACAA 1236 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1845 AATTCCATATTACATCGACTTAGTAGGTCGATACAGACTCAGCTCCCAGGCGCGGAACAA 1904 Query 1237 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCATAACGCGAG 1296 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1905 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCAGAACGCGAG 1964 Query 1297 GCAAGAGGCATTgcagaagaagaaagcagaaaagaagaaaatgatggaggaagcggaagc 1356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1965 GCAAGAGGCATTGCAGAAGAAGAAAGCAGAAAAGAAGAAAATGATGGAGGAAGCGGAAGC 2024 Query 1357 aaagatgagcgcagaagTGATAAGGAAGAAAGAGGCAAAAGAGAGAGCAAGGCAGGTGAA 1416 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2025 AAAGCTGAGCGCAGAAGTGATAAGGAAGAAAGAGGCAAAAGAAAGAGCAAGGCAGGTGAA 2084 Query 1417 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 1456 |||||||||||||||||||||||||||||||||||||||| Sbjct 2085 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 2124 > Ahg929910 jgi|Araly1|929910|scaffold_302367.1 Length=1031 Score = 182 bits (98), Expect = 1e-44 Identities = 144/166 (87%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 858 AGAAGGCT-GCAAAAACTATGCAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATT 916 |||||| | ||||||| |||| ||||||| | ||||||||||| ||||| |||| ||| Sbjct 4 AGAAGG-TAGCAAAAAAGATGCTAAAGGAGCTAAGGGATTTGCAGAGATTCGCTGAGATA 62 Query 917 GTGTCTCCTCCTGCTGGAAGGAAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATC 975 ||||||||||| || || ||||| |||||||| |||||||| | || ||||||||||||| Sbjct 63 GTGTCTCCTCCCGCCGGGAGGAAGTGGGTGTCCGAGGAGTTAG-CTGTGATCTCTGAATC 121 Query 976 CAAGGAAGTTGCTGCGGATTTGATCACTGACACTGTTCTTGATCAG 1021 ||||||||||||||||||| ||||||| |||||||| ||||||||| Sbjct 122 CAAGGAAGTTGCTGCGGATATGATCACAGACACTGTGCTTGATCAG 167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69628967860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5