BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G49950.1 Length=1816 Score E Sequences producing significant alignments: (Bits) Value Ahg495050 jgi|Araly1|495050|fgenesh2_kg.8__866__AT5G49950.1 2724 0.0 Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904 191 2e-47 > Ahg495050 jgi|Araly1|495050|fgenesh2_kg.8__866__AT5G49950.1 Length=1670 Score = 2724 bits (1475), Expect = 0.0 Identities = 1606/1671 (96%), Gaps = 2/1671 (0%) Strand=Plus/Plus Query 36 CAAAAGGTCTTTACTTTGAGATTGTCACTATGAATTGCGCAATCACAGAGGATGATTTGA 95 |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1 CAAAAGATCTTTACTTTGAGATTGTCCCCATGAATTGCGCAATCACAGAGGATGATTTGA 60 Query 96 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCTCCTTACCTCATCATCTTCAAATCGCTCTTACTCATCCCAATCTCTCACTATCTCA 120 Query 156 TCTTCTTCTTCCTCACAATCTTACT-TTTCCTCTACTTCTTCCTAGAGATTCATTTTCCT 214 |||||||||||||||||||| || | ||| |||||||||||||| ||||||||| | ||| Sbjct 121 TCTTCTTCTTCCTCACAATCCTAGTGTTT-CTCTACTTCTTCCTCGAGATTCATATCCCT 179 Query 215 AAAGCAGATCCTATCTCTCTTACCTTCAATCCAAACTCTGACTTCTGCAAGTTTATTGTC 274 |||||||| ||||||||||| || ||||||||||||||||| |||||| ||||||||||| Sbjct 180 AAAGCAGACCCTATCTCTCTCACTTTCAATCCAAACTCTGAGTTCTGCCAGTTTATTGTC 239 Query 275 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTCTGGCTTTCAAGCCCTCAT 334 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 240 TCCAAGTGTCGTCTCCTTCATGGACGATACTTTCCTACGTTTTGGCTTTCAAGCCCTCAT 299 Query 335 CTTCAAACAGCTTTCCTTACCCTTTTTGGAAAGTCTCCTCCTTTCTCCTATAAGCGAATT 394 ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| Sbjct 300 CTTCAAACAGCTTTCCTTAGCCTTTTTGGAAAGTCTCCTCCTTTTTCCTATAAAAGAATT 359 Query 395 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGATTGGTTAATGCATTCTGATGTT 454 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 CTCTATCAGGCAACAGATGGTGGCACAATTGCTTTGGACTGGTTAATGCATTCTGATGTT 419 Query 455 GTGGAAGGTATATCTCAAGTGGTCAATGCCTCAAATCCAGGAACTGATAGGACTCCAATT 514 |||||||| |||||||| |||||||||| ||||| | ||||||||||||||||||||||| Sbjct 420 GTGGAAGGCATATCTCAGGTGGTCAATGACTCAACTTCAGGAACTGATAGGACTCCAATT 479 Query 515 GCTATTATAGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 574 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GCTATTGTGGTTCCAGGGCTCACTAGTGATTCTTCTGCTGCATATATTAAACATATTGCC 539 Query 575 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTCAGGCTGGCAAAGGAAGGATGGAATGTTGTTGTGCAAAACCACCGTGGACTTGGAGGG 599 Query 635 ATATCTTTAACTTCTGACTGCGTCTACACTGCCGGGTGGACAGAAGATCTTCGGAAAGTA 694 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 600 ATATCTTTAACTTCTGACTGCGTCTACACTGCTGGGTGGACAGAAGATCTTCGGAAAGTA 659 Query 695 ATTGCTCACATCCATTCTCAGTTCCCAGAGGCTCCTTTGTTTGCTGTTGGAACAAGCATT 754 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 660 ATTGATCACATCCATTCTCAGTTCCCAGAGGCGCCTTTGTTTGCTGTTGGAACAAGCATT 719 Query 755 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 814 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 GGTGCCAACGTTCTGGTAAAATATCTTGGGGAGGATGGGCCAAATACACCTCTTATTGGA 779 Query 815 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGATCGATTTATCAACCGCAAA 874 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 780 GCTACTGCTGTGTGTTCTCCTTGGGATCTATTGATATGTGACCGATTTATCAACCGCAAA 839 Query 875 CTCGTGCAAAAAGTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 934 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CTCGTGCAAAAATTGTATGACAGAATGCTTACTATTGGTCTACAAGGTTATGCACAATTG 899 Query 935 CACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 994 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAGTCACGTTCAGTT 959 Query 995 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1054 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CGAGAGTTTGACAACTACGCCACCAGGCTTGTTGCCAAATTCGAGACAACTGATACATAC 1019 Query 1055 TATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTGTTCCGCTCCTTTGCATC 1114 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1020 TATAGACGTTCAAGCAGTTCACAATATGTGGGAAATGTCGCTGTTCCGCTCCTTTGCATC 1079 Query 1115 AGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTTGGGATGAATGTAGGGCA 1174 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1080 AGTGCTTTGGATGATCCAGTTTGTACTAGGGAAGCTATTCCTTGGGATGAATGTAGGGCA 1139 Query 1175 AACAAAAACATAGTTCTGGCTACCACAACACATGGTGGTCATCTAGCTTACTATGAAGGG 1234 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 1140 AACAAAAACATAGTTCTCGCAACCACAACACATGGTGGTCATCTTGCTTACTATGAAGGG 1199 Query 1235 TTGACAGCGTCAAGCATGTGGTGGACAAGGGTTGTACACGAATATTTTGAAGTGCTACTC 1294 |||||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||| Sbjct 1200 TTGACAGCAACAAGCATGTGGTGGGCAAGGGCTGTGCAAGAATATTTTGAAGTGCTACTC 1259 Query 1295 TCCAGCCCCTTTGCAGACAGAAGACACAAGATCATCCCCGAACCATTGGGATCTTCGATT 1354 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1260 TCCAGCCCCTTTGCAGACAGAAGACAGAAGATCATCCCCGAACCATTAGGATCTTCGATT 1319 Query 1355 GATCAGGGACCATTCGTGGATGCTGGAGAACACGGGATGGTTGCTGCTGCAAGTGAAGTG 1414 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1320 GATCAGGGACCATTCGTGGATGCTGGAGAAGACGGGATGGTTGCTGCTGCAAATGAAGTG 1379 Query 1415 GACACAACAAGAGCTGATGCAGAACCAGAGGATAATGCTCAAATTTATGTAAAGACAAGT 1474 |||||||||||| |||||| |||||||||||||| |||||||||| ||| |||||||||| Sbjct 1380 GACACAACAAGACCTGATGTAGAACCAGAGGATATTGCTCAAATTGATGAAAAGACAAGT 1439 Query 1475 AATCATCTACACAAGGACAATAATCCTCAAGTTTATAACAATATACTCGGTCCTTTGAAG 1534 ||| ||| |||||||||||||| || |||||||||||||| | ||||||||||||||||| Sbjct 1440 AATTATCCACACAAGGACAATACTCTTCAAGTTTATAACAGTTTACTCGGTCCTTTGAAG 1499 Query 1535 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 AAGAGAGTGGATCAGCTTTCAAGATACAGCCGGAAATCGATTTGGCTATTGGCATACATT 1559 Query 1595 GCTATAGTCACGACGTGGCCACTAGTAGGACCTGCACTTTTGTTTTCAATTAAGAGAAGA 1654 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 1560 GCTATAGTCACGACGTGGCCACTTGTAGGACCTGCACTTTTGTTTTCAATCAAGAGGAGA 1619 Query 1655 TTCAGAAAGCTCGTAGAAAAATAGAGATCATATTCTACTAGTGCAAAGTAA 1705 ||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1620 TTCAGAAAGCTCGTAGAAAAATAGAAATCATATTCTACTAATGCAAAGTAA 1670 > Ahg342141 jgi|Araly1|342141|fgenesh1_pg.C_scaffold_3001904 Length=1374 Score = 191 bits (103), Expect = 2e-47 Identities = 123/133 (92%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1038 AGACAACTGATACATACTATAGACGTTCAAGCAGTTCACAATATGTGGAAAATGTCGCTG 1097 ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||| Sbjct 1118 AGACAACTGATACATACTATAGACGTTCAAGCAGTGCGCAATATGTGGGAAATGTCTCTG 1177 Query 1098 TTCCGCTCCTTTGCATCAGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTT 1157 |||| |||||||| | |||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct 1178 TTCCACTCCTTTGTACCAGTGCTTTGGACGATCCAGTTTGTAATAGGGAAGCTATTCCTT 1237 Query 1158 GGGATGAATGTAG 1170 ||||||||||||| Sbjct 1238 GGGATGAATGTAG 1250 Score = 86.1 bits (46), Expect = 8e-16 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 934 GCACCATTCCATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 982 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1071 GCACCATTCTATCATTTCTCGTATAGCCGATTGGGAAGGCATTAAGAAG 1119 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68181538550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5