BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G49990.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495055 jgi|Araly1|495055|fgenesh2_kg.8__871__AT5G49990.1 3005 0.0
Ahg496474 jgi|Araly1|496474|fgenesh2_kg.8__2290__AT5G62890.1 1051 0.0
> Ahg495055 jgi|Araly1|495055|fgenesh2_kg.8__871__AT5G49990.1
Length=1917
Score = 3005 bits (1627), Expect = 0.0
Identities = 1838/1937 (95%), Gaps = 25/1937 (1%)
Strand=Plus/Plus
Query 1 ATAGCGAAACGTAGACAACTGTCCCCTCTGCTCCTTCCTCATCAAGCctcttctcttcac 60
||| |||||||||||||||||||||||||||||||||||| || | | | | |
Sbjct 1 ATAACGAAACGTAGACAACTGTCCCCTCTGCTCCTTCCTCTTC-A----C-T-GC-T--- 49
Query 61 tgcttcttcttctagtttactctcca-attttcttctgctgctgcttcttcACAAGAGGT 119
| |||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 50 T-CTTCTTCTTCAAGTTTACTCT-CATATTTTCTTCTGCTGCTTCTTCTTCACAAGAGGT 107
Query 120 TGAAGAATGTCAGCTCCGAAATCGGGTGGTGATCCACTACCACATCCGCCGAAAGAACAG 179
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 108 TGAAG-ATGTCAGCTCCTAAATCGGGTGGTGATCCACTGCCACATCCGCCGAAAGAACAG 166
Query 180 CTTCCAGATATCTCTTACTGCATTACAAGTCCTCCTCCATGGCCTGAGGCTGTTCTGCTT 239
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 167 CTTCCCGATATCTCTTACTGCATTACAAGCCCTCCTCCATGGCCTGAGGCTGTTCTACTT 226
Query 240 GGGTTTCAACACTACCTTGTGATGCTTGGAACAACAGTTCTGATTCCATCGGCTCTTGTT 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 227 GGGTTTCAACACTACCTTGTGATGCTTGGAACAACAGTTCTGATTCCTTCGGCTCTTGTT 286
Query 300 CCACAAATGGGAGGTAGAAATGAAGAGAAGGCAAAGCTGATCCAGACAATATTGTTTGTA 359
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 287 CCACAAATGGGAGGTGGAAATGAAGAGAAGGCGAAGCTGATCCAGACAATACTGTTTGTA 346
Query 360 GCTGGATTGAACACACTGCTCCAAACTGTGTTTGGAACTAGATTACCTGCTGTTATTGGA 419
|||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 347 GCTGGATTGAACACGTTGCTCCAGACAGTGTTTGGAACTAGATTACCTGCTGTCATTGGA 406
Query 420 GCATCTTATACATTTGTCCCGGTTACTATCTCAATCATGCTTTCTGGGAGATTCAATGAC 479
||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 407 GCATCTTATACATATGTCCCAGTTACAATCTCAATCATGCTTTCTGGAAGATTCAATGAC 466
Query 480 GTTGCAGATCCAGTTGAGCGATTTAAGAGGATAATTCGGGCAACCCAAGGTGCTCTT-AT 538
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 467 GTTGCAGATCCAGTTGAACGATTTAAGAGGATAATTCGGGCAACCCAAGGTGCT-TTAAT 525
Query 539 TGTTGCTTCAACTCTTCAAATTATCCTTGGCTTCAGTGGCCTTTGGCGTAATGTTGTAAG 598
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 526 TGTTGCTTCAACTCTTCAAATGATCCTTGGCTTCAGTGGCCTCTGGCGCAATGTTGTAAG 585
Query 599 GTTCTTAAGTCCACTATCTGCTGCTCCTTTGGTTGGATTAGTTGGTTATGGCCTGTACGA 658
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 586 GTTCTTAAGTCCTCTATCTGCTGCTCCTCTGGTTGGATTAGTTGGTTATGGCCTGTACGA 645
Query 659 GTTAGGTTTTCCCGGTGTTGCTAAGTGTATTGAGATTGGACTGCCTGGGCTTATTATTCT 718
||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 646 GTTGGGTTTTCCTGGTGTTGCTAAGTGTATCGAGATTGGACTGCCGGGGCTTATAATTCT 705
Query 719 CATACTAATATCACAGTACATGCCCCATGTTATAAAAGGAGGAAAACATGTGTTTGCTCG 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TATACTAATATCACAGTACATGCCCCATGTTATAAAAGGAGGAAAACATGTGTTTGCTCG 765
Query 779 CTTTGCTGTCATATTTTCTGTGGCGATAGTATGGCTTTATGCTTTCTTTCTTACACTTGG 838
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 766 CTTTGCTGTCATATTTTCTGTGGCGATAGTATGGCTTTTTGCTTTCTTTCTTACACTTGG 825
Query 839 TGGTGCCTATAATGGTGTTGGGACAGATACTCAAAGAAGCTGTCGGACTGATCGCGCTGG 898
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 826 TGGTGCCTATAATGGTGTTGGGACAAATACTCAAAGAAGCTGTCGGACTGATCGTGCTGG 885
Query 899 GCTTATAAGTGCTGCTCCATGGATAAGAGTTCCGTGGCCTTTCCAATGGGGAGCACCATT 958
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 886 GCTTATAAGTGCTGCTCCATGGATAAGAGTTCCATGGCCATTCCAATGGGGCGCACCATT 945
Query 959 GTTTGATGCTGGTGAAGCATTTGCCATGATGATGGCTTCTTTTGTTGCTCTTGTTGAGTC 1018
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GTTTGATGCTGGTGAAGCCTTTGCCATGATGATGGCTTCTTTTGTTGCTCTTGTTGAGTC 1005
Query 1019 CACAGGTGCTTTTATTGCCGTCTCAAGATATGCTAGTGCCACAATGCCGCCACCTTCTGT 1078
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1006 CACAGGTGCTTTTATTGCTGTCTCAAGATATGCTAGTGCTACAATGCCGCCACCTTCTGT 1065
Query 1079 TATCAGCCGCGGGGTTGGTTGGCAGGGAGTTGCAATTTTAATCTCAGGGTTGTTCGGAAC 1138
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TATCAGCCGTGGGGTTGGTTGGCAGGGAGTTGCAATTTTAATCTCAGGGTTGTTCGGAAC 1125
Query 1139 TGGTATAGGGTCTTCAGTTTCTGTCGAGAATGCGGGTCTGCTGGCACTAACAAAAATTGG 1198
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1126 TGGTATAGGGTCTTCAGTTTCTGTCGAGAATGCGGGTCTACTGGCACTAACAAAAATTGG 1185
Query 1199 TAGCAGGAGAGTTGTTCAAATATCTGCAGGCTTTATGATATTCTTCTCAATTCTTGGGAA 1258
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TAGCAGGAGAGTTGTCCAAATATCTGCAGGCTTTATGATATTCTTCTCAATTCTTGGGAA 1245
Query 1259 GTTCGGGGCAGTATTTGCATCCATACCTTCTCCTATCATAGCTGCCTTGTACTGTCTCTT 1318
||| |||||||| |||||||| |||||| |||||||||| || |||||||||||||||||
Sbjct 1246 GTTTGGGGCAGTGTTTGCATCAATACCTGCTCCTATCATTGCCGCCTTGTACTGTCTCTT 1305
Query 1319 CTTTGCGTATGTAGGTGCTGGAGGACTGAGTTTGCTGCAATTCTGCAACCTGAATAGCTT 1378
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1306 CTTTGCGTATGTTGGTGCTGGAGGACTGAGTTTGCTGCAATTTTGCAATCTGAATAGCTT 1365
Query 1379 CAGGACATTATTCATACTGGGCTTCTCAATCTTCCTAGGCCTATCAATTCCACAATATTT 1438
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CAGGACATTGTTCATATTGGGCTTCTCAATCTTCCTAGGCCTATCAATTCCACAATATTT 1425
Query 1439 CAACGAGCACACAGCCATCAAAGGCTATGGTCCAGTTCATACCGGGGCAAGATGGTTCAA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 CAACGAGCACACAGCCATCAAAGGCTATGGTCCAGTTCATACCGGGGCAAGATGGTTCAA 1485
Query 1499 CGACATGGTCAATGTGCCCTTCTCGTCCAAGGCCTTTGTGGGAGGATGTGTGGCTTACTT 1558
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1486 CGACATGGTCAATGTGCCCTTCTCGTCCAAGGCGTTTGTGGGAGGATGTGTGGCTTACTT 1545
Query 1559 GTTGGACACGACGCTTCACAAGAAAGATGGTTCGATCAGGAAAGACCGAGGTAAACACTG 1618
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 GTTGGACACGACGCTCCACAAGAAAGATGGTTCGATCAGGAAAGACCGAGGTAAACACTG 1605
Query 1619 GTGGGACAGATTCTGGACTTTCAAGAACGACCCGAGAACAGAAGAGTTCTATGCTCTTCC 1678
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1606 GTGGGACAGATTCTGGACTTTCAAGAACGACCCGAGAACCGAAGAGTTCTATGCTCTTCC 1665
Query 1679 GTTCAACCTCAACAAATATTTCCCTTCTGTCTGaaaaaaaaTCCTTCCAAACTTT-ATGG 1737
||||| ||||||||||| ||||||||||||||||||| ||||| |||||||| |||
Sbjct 1666 TTTCAATCTCAACAAATACTTCCCTTCTGTCTGAAAAA---TCCTTACAAACTTTTATGT 1722
Query 1738 AATGCTGTTTTGCTAGTTTTGTGTCCCTTAGGAGGACACACCTTATCTAGCTAGGTTTTA 1797
|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1723 AATGCTATTTTGCTAGTGTTGTGTCCCTTAGGAGGACACAGCTTATCTAGCTAGGTTT-A 1781
Query 1798 TGTGCATATTCGGTGAGGAGACTATAAAACGCAACTAGATATTATAACCCAAAGTGTTAA 1857
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1782 TGTGCATATTCGGTGAGGAGACTCTAAA-CGCAACTAGATATTATAACCCAAAGTGTTTA 1840
Query 1858 GTAACATTTTAGAAATATTAATGTGATGTTTCTT-CT-ATGTTTAGATGTTTTGCATTAA 1915
||||||||||||||| |||| |||||||||| || || ||||||||||||||||||||||
Sbjct 1841 GTAACATTTTAGAAACATTACTGTGATGTTTGTTTCTTATGTTTAGATGTTTTGCATTAA 1900
Query 1916 AGATGATACTCGTTTTG 1932
|||||||||||||||||
Sbjct 1901 AGATGATACTCGTTTTG 1917
> Ahg496474 jgi|Araly1|496474|fgenesh2_kg.8__2290__AT5G62890.1
Length=2156
Score = 1051 bits (569), Expect = 0.0
Identities = 1269/1600 (79%), Gaps = 75/1600 (5%)
Strand=Plus/Plus
Query 153 CCACTACCACATCCGCCGAAAGAACAGCTT-CCAGATATCTCTTACTGCATTACAAGTCC 211
|||| ||||||||| || ||||| || ||| ||| | || ||||| ||||| || |||||
Sbjct 338 CCACAACCACATCCTCCTAAAGATCAACTTCCCA-ACATTTCTTATTGCATCACCAGTCC 396
Query 212 TCCTCCATGGCCTGAGGCTGTTCTGCTTGGGTTTCAACACTACCTTGTGATGCTTGGAAC 271
|||||| ||||| || ||| |||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 397 TCCTCCTTGGCCCGAAGCTATTCTTCTTGGATTTCAACATTACCTTGTGATGCTTGGGAC 456
Query 272 AACAGTTCTGATTCCAT-CGGCTCTTGTTCCACAAATGGGAGGTAGAAATGAAGAGAAGG 330
|||||| || || || | | ||||||||||| || ||||||||| || ||||||||||||
Sbjct 457 AACAGTCCTCATACC-TACTGCTCTTGTTCCCCAGATGGGAGGTGGATATGAAGAGAAGG 515
Query 331 CAAAGCTGATCCAGACAATAT-TGTTTGTAGCTGG-ATTGAACACACTGCTCCAAACTGT 388
||||| |||||||||| || | | ||||| ||||| | | |||||| |||||||||| |
Sbjct 516 CAAAGGTGATCCAGACTAT-TCTCTTTGTTGCTGGCA-TCAACACATTGCTCCAAACACT 573
Query 389 GTTT-GGAACTAGATTACCTGCTGTTATTGGAGCATCTTATACATTTGTCCCGGTTACTA 447
||| || |||||||| |||||||||||||||||||| || ||||| || || || |
Sbjct 574 -TTTCGGGACTAGATTGCCTGCTGTTATTGGAGCATCCTACACATTCGTACCAACAACGA 632
Query 448 TCTCAATCATGCTTTCTGGGAGATTCAATG--ACGTTGCAGATCC-AGTTGAGCGATTTA 504
| || || || || ||||| ||||||| || || | || | || | | || || |||
Sbjct 633 TATCCATAATCCTCTCTGGCAGATTCAGTGATAC-CT-CAAACCCTA-TAGATCGCTTTG 689
Query 505 AGAGGATAATTCGGGCAACCCAAGGTGCTCTT-ATTGTTGCTTCAACTCTTCAAATTATC 563
|||||||||| |||||||||||||| || ||| ||||||||||| || || || || ||
Sbjct 690 AGAGGATAATGCGGGCAACCCAAGGCGC-CTTGATTGTTGCTTCTACCCTGCAGATGATT 748
Query 564 CTTGGCTTCAGTGGCCTTTGGCGTAATGTTGTAAGGTTCTTAAGTCC-ACTATCTGCTGC 622
||||| |||||||| || ||||| |||||||| |||||||||||||| | | || ||||
Sbjct 749 CTTGGTTTCAGTGGTCTCTGGCGAAATGTTGTTAGGTTCTTAAGTCCTA-TTTCAGCTGT 807
Query 623 TCCTTTGGTTGGAT-TAGTTGGTTATGGCCTGTACGAGTTAGGTTTTCCC-GGTGTTGCT 680
||| ||| ||| | | ||||||| ||| ||||| ||||| || |||||| || ||||||
Sbjct 808 TCCACTGG-TGGGTCTCGTTGGTTTTGGGCTGTATGAGTTTGG-TTTCCCGGGGGTTGCT 865
Query 681 AAGTGTATTGAGATTGGACTGCCTGGGCTTATTATTCTCA-TACTAATATCACAGTACAT 739
|| || || |||||||||||||||| |||| ||||||| | || | | ||||||||| |
Sbjct 866 AAATGCATAGAGATTGGACTGCCTGAGCTTCTTATTCT-AGTATTCGTTTCACAGTACCT 924
Query 740 GCCCCATGTTATAAAAGGA-GGAAAACATGTGTTTG-CTCGCTTTGCTGTCATATTTTCT 797
||| ||||| || ||| | |||||| ||||||||| | || |||||||| ||||| |
Sbjct 925 GCCTCATGTGATCAAATCAGGGAAAA-ATGTGTTTGAC-CGATTTGCTGTGATATTCGCG 982
Query 798 GTGGCGATAGTATGGCTTTATGCT-TTCTTTCTTACACTTGGTGGTGCCTATAATGGTGT 856
|||| ||| || ||| | |||||| || |||||||| ||||||| ||||| |||||||
Sbjct 983 GTGGTGATTGTGTGGATCTATGCTCATC-TTCTTACAGTTGGTGGGGCCTACAATGGTGC 1041
Query 857 TGGGA-CAGA-TACTCAAAGAAGCTGTCGGACTGATCGCGCTGGGCTTATAAGTGCTGCT 914
| | | || | ||| |||| ||| |||||||| ||||| ||||| | ||| |||||||
Sbjct 1042 T-GCACCA-ACTACACAAACAAGTTGTCGGACAGATCGTGCTGGAATCATAGGTGCTGCC 1099
Query 915 CCATGGATAAGAGTTCCGTGGCCTTTCCAATGGGGAGCACCATTGTTTGATGCTGGTGAA 974
||||||||||||||||||||||||||||| ||||| || |||| |||||||||||| |||
Sbjct 1100 CCATGGATAAGAGTTCCGTGGCCTTTCCAGTGGGGTGCCCCATCGTTTGATGCTGGAGAA 1159
Query 975 GCATTTGCCATGATGATGGCTTCTTTTGTTGCTCTTGTTGAGTCCACAGGTGCTTTTATT 1034
|| ||||| |||||||||||||||||||||||||| |||||||| || ||||||||| |
Sbjct 1160 GCTTTTGCAATGATGATGGCTTCTTTTGTTGCTCTAGTTGAGTCAACCGGTGCTTTTGTC 1219
Query 1035 GCCGTCTCAAGATATGCTAGTGCCACAATGCCGCCACCTTCTGTTATCAGCCGCGGGGT- 1093
|| ||||| ||||| || ||||| || ||| |||||||||| | ||||||| ||| |
Sbjct 1220 GCTGTCTCGAGATACGCAAGTGCAACGATGTTGCCACCTTCTATCCTCAGCCG-GGG-TA 1277
Query 1094 T-GGTTGGCAGGGAGTTGCAATTTTAATCTCAGGGTTGTTCGGAACTGGTATAGGGT-CT 1151
| || |||||||||||||| ||| | || ||||||||||| || ||||| | ||| |
Sbjct 1278 TAGGCTGGCAGGGAGTTGCGATTCTGATATCAGGGTTGTTTGGTACTGG-AGCTGGTTCC 1336
Query 1152 TCAGTTTCTGTCGAGAATGCGGG-TCTGCTGGCACTA-ACAAAAATTGGTAG-CAGGAGA 1208
|| || ||||| || |||||||| | | |||| || ||| | ||||||| | | ||
Sbjct 1337 TCTGTCTCTGTAGAAAATGCGGGAT-TATTGGC-CTTGACACGAGTTGGTAGTC-GAAGG 1393
Query 1209 GTTGTTCAAATATCTGCAGGCTTTATGATATTCTTCTCAATTCTTGGGAAGTTCGGGGCA 1268
||||| || ||| |||||||||| |||||||||||||| ||||| || || ||||| ||
Sbjct 1394 GTTGTCCAGATAGCTGCAGGCTTCATGATATTCTTCTCCATTCTCGGAAAATTCGGAGCT 1453
Query 1269 GTATTTGCATCCATACCTTCTCCTATCATAGCTGCCTTGTACTGTCTCTTCTTTGCGTAT 1328
|| ||||| || || ||| | || ||||| ||||| || |||||||||||||| |||||
Sbjct 1454 GTGTTTGCTTCAATTCCTGCACCCATCATTGCTGCTTTATACTGTCTCTTCTTCGCGTAC 1513
Query 1329 GTAGGTGCTGGAGGACTGAGTTTGCTGCAATTCTGCAACCTGAATAGCTTCAGGAC-ATT 1387
|| || |||||||| ||||||| || |||||||||||| | || ||||||||||| |
Sbjct 1514 GTGGGAGCTGGAGGTTTGAGTTTCCTTCAATTCTGCAACTTAAACAGCTTCAGGACCAAG 1573
Query 1388 ATTCATACTG-GGCTTCTCAATCTTCCTAGGCCTATCAATTCCACAATATTTCAACGAGC 1446
||||| || || ||||| ||||||| ||| | || || || ||||| ||||| |||
Sbjct 1574 -TTCAT-CTTAGGTTTCTCTGTCTTCCTGGGCTTGTCCATCCCTCAATACTTCAATGAGT 1631
Query 1447 ACACAGCCATCAAAGGCTATGGTCCAGTTCATACCGGGGCAAGATGGTTCAACGACATGG 1506
|||| || |||||||| |||||||| || || || ||||| | |||||||| || ||||
Sbjct 1632 ACACCGCAATCAAAGGATATGGTCCGGTCCACACTGGGGCTCGTTGGTTCAATGATATGG 1691
Query 1507 TCAATGTGCCC-TTCTCGTCCA-AGGCCTTT-GTGGGAGG-ATGTGTGGCTTACTTGTTG 1562
| ||||| ||| ||||| || | || ||||| || | || | | || |||| ||| |||
Sbjct 1692 TGAATGT-CCCGTTCTCCTC-AGAG-CCTTTTGTTGCTGGCA-GCGTCGCTTTCTTCTTG 1747
Query 1563 GACA-CGACGCTT-CACAAGAAAGA-TGGTTCGATCAGGAAAGACCGAGGTAAACACTGG 1619
|||| | || || ||||||||||| | |||||| |||||||||||||| || || |||
Sbjct 1748 GACAAC-ACA-TTGCACAAGAAAGACTC-TTCGATAAGGAAAGACCGAGGGAAGCATTGG 1804
Query 1620 TGGGACA-GATTCTGGA-CTTTCAA-GAACGACCCGAGAACAGAAGAGTTCTA-TGCTCT 1675
||||||| | || | || ||||||| | ||| | |||| ||||| ||||| | ||||
Sbjct 1805 TGGGACAAG-TT-TAGATCTTTCAAAGGT-GACACAAGAAGTGAAGAATTCTACT-CTCT 1860
Query 1676 TCCGTTCAACCTCAACAAATATTTCCCTTCTGTCTGaaaa 1715
||| ||||| |||||||| |||||||| ||||||| ||||
Sbjct 1861 TCCTTTCAATCTCAACAAGTATTTCCCATCTGTCT-AAAA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5