BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50100.1 Length=977 Score E Sequences producing significant alignments: (Bits) Value Ahg495066 jgi|Araly1|495066|fgenesh2_kg.8__882__AT5G50100.1 1293 0.0 Ahg915254 jgi|Araly1|915254|Al_scaffold_0008_5 409 2e-113 > Ahg495066 jgi|Araly1|495066|fgenesh2_kg.8__882__AT5G50100.1 Length=858 Score = 1293 bits (700), Expect = 0.0 Identities = 784/824 (95%), Gaps = 7/824 (1%) Strand=Plus/Plus Query 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAACGAGAGGAGC---TGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 57 Query 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 58 CCTTCTCTTCGATCATTATCAAACCATTTCAATCCCAATTTCAATCACAGAATCATCCCA 117 Query 184 ACAGGGTTTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACA 243 || |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 118 ACCGGGTTTAAATATCAAGTTAGAGCGATACAAGGAACAAGTACTGATCCTGTTATTACA 177 Query 244 CCATTAAAGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGAT 303 ||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 178 CCATTGAAGAACAGAGATGAACCAAAACCACAAAATTGGAAAATCAAAATGCTTTATGAT 237 Query 304 GGAGATTGTCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 363 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 GGAGATTGCCCTCTCTGTATGCGTGAGGTTAATATGCTTATGGAAAGGAATGAAAAACAT 297 Query 364 GGAACTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGG 423 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 298 GGAACTATAAAGTTCGTCGACATAAGTTCAAATGATTATTCTCCGGAAGATAATCAAGGG 357 Query 424 CTTGATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTT 483 ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | | Sbjct 358 CTTGATTACAAAACAGTAATGGGGCAGATTCATGCTATTCAATCTGATGGTAACGTCG-T 416 Query 484 AA-GGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACAC 542 || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 417 AACAGGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGACTTGGTTGGGTTTACAC 476 Query 543 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 TATCACCAAATTTGAACCAATAGGGAAGTTAGCAGATGTTGTGTATGATGTATGGGCTAA 536 Query 603 ATACCGACTTCAAGTCACAGGGAGGCCATCTATAGAAGCTATTCTTGAAGCAAGAAAGAA 662 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 537 ATATCGACTTCAAGTCACAGGGAGGCCATCTTTAGAAGCTATTCTTGAAGCAAGAAAGAA 596 Query 663 AGATAAGGTAGAGACATGTGGTGAAAGCAAGAACTGCAAGATATGAATTTTCTTTATACT 722 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| Sbjct 597 AGATAAGGTAGAGACATGTGGTGAAAGCAAGGACTGCAAGATATGATTTTTCTTCATACT 656 Query 723 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGAGTTACAAATTTTCTTTATGTGAGT 782 |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | Sbjct 657 CTTTGAATTGTTACAAAATACCAAAACCAGTTTGGACTTAGAAATTATCTTTATGTGACT 716 Query 783 GTGAGAATTTGTATATATATGATACACA-GCCCCATTACATTAGCCAAATCATCCTGATG 841 ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| Sbjct 717 GTGAGAATTTGTATAAATATGATACATAAGCCCCATTACATTAGCCAAATCATCCTGATG 776 Query 842 ATACATT-ATACACATGAATAATTTCAGCAAATTTTGAAACTGT 884 ||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 777 ATACATTTATACACATGAATATTTTCAGCAAATTTTGAAACTGT 820 > Ahg915254 jgi|Araly1|915254|Al_scaffold_0008_5 Length=747 Score = 409 bits (221), Expect = 2e-113 Identities = 327/375 (87%), Gaps = 20/375 (5%) Strand=Plus/Plus Query 191 TTAAATATCAAGTTAGGGCGATACAAGGAACAAGTACTGATCCTGTCATTACACCATTAA 250 ||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| | Sbjct 218 TTAAATATCAAGTTAGGGCAATACAAGGAGCAAGTGTTGATCCTGTTGTTACACCATTGA 277 Query 251 AGAACAGAGAGGAACCAAAGCCACAAAACTGGAAAATCAAAATGCTTTATGATGGAGATT 310 |||| |||||||||||||| || ||||| |||||||||||| |||||||||||||||||| Sbjct 278 AGAATAGAGAGGAACCAAAACCTCAAAATTGGAAAATCAAATTGCTTTATGATGGAGATT 337 Query 311 GTCCTCTCTGTATGCGTGAGGTTAATA-T--GCTTATGGAAAGGAATGAAAAACATGGAA 367 ||||||||||||||||||||||||||| | ||||| |||||||||||| || |||||| Sbjct 338 GTCCTCTCTGTATGCGTGAGGTTAATAATATGCTTAAGGAAAGGAATGAGAAGTATGGAA 397 Query 368 CTATAAAGTTTGTCGACATAAGTTCAAATGATTATTCCCCGGAAGATAATCAAGGGCTTG 427 |||| |||||||||||||| ||| ||| |||||||||||||||||| | Sbjct 398 CTATTAAGTTTGTCGACAT---TTC-----------CCC-GGAAGATAATCAAGGGCTAG 442 Query 428 ATTACAAAACAGTGATGGGGCAGATTCATGCCATTCAGTCTGATGGTAACGTTGTTA-AG 486 |||||||||| || |||||||| || ||||| ||| | |||||||||||||| || | || Sbjct 443 ATTACAAAACCGTAATGGGGCAAATCCATGCTATTGAATCTGATGGTAACGTGGTAATAG 502 Query 487 GGTGTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 546 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 GC-GTGGAGGCATTTAGGAGATTGTATGAAGAAGTTGGGCTTGGATGGGTTTACACTATC 561 Query 547 ACCAAATTTGAACCA 561 ||||||||||||||| Sbjct 562 ACCAAATTTGAACCA 576 Score = 158 bits (85), Expect = 9e-38 Identities = 112/124 (90%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 64 ATGGCAACGAGAGGAGCTGTTGCTGCTGCTGCATCCACAATATGGAAGCACCGAAGAAAC 123 ||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAACGAGAGGAGC---TG-T--TGCTGCATCCACAATATGGAAGCACCGAAGAAAC 54 Query 124 CCTTCTCTTCGATCATTATCTCGCCATTTCAATCCCAATTTCAATCATAGAATCATCCCA 183 | |||||||||||||||||||| |||||||||| ||||||||| || | ||||||||||| Sbjct 55 CTTTCTCTTCGATCATTATCTCACCATTTCAATTCCAATTTCACTCCTCGAATCATCCCA 114 Query 184 ACAG 187 |||| Sbjct 115 ACAG 118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36293016984 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5