BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50360.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949566 jgi|Araly1|949566|scaffold_801453.1 1236 0.0
Ahg887585 jgi|Araly1|887585|Al_scaffold_0058_1 987 0.0
Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1 110 3e-23
> Ahg949566 jgi|Araly1|949566|scaffold_801453.1
Length=910
Score = 1236 bits (669), Expect = 0.0
Identities = 851/932 (91%), Gaps = 39/932 (4%)
Strand=Plus/Plus
Query 11 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTAC---- 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTGTTTGTTAGACAAAACATGAATTTCCGGGGAGGTTGTTGTATTGCGAGGTACGGTG 60
Query 67 -----GGTGGTAGTGGTGGT-G-G-AAATGATATGTCGAAGGTTGATCGGATTATGCTCC 118
|||||| |||||||| | | |||||||||||| |||||||||||| |||||||||
Sbjct 61 GTGGTGGTGGTGGTGGTGGTGGTGCAAATGATATGTCAAAGGTTGATCGGCTTATGCTCC 120
Query 119 GGTACCGTCCGATTGCACCGAGACCTGATTCTGGTGGATCTCCTGCTTCACCGACGGAGA 178
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 GGTACCGTCCGATTGCACCGAGACCTGATTCCGGTGGATCTTCTGCTTCACCGACGGAGA 180
Query 179 AGAATGGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATT 238
| |||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AAAATGGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATT 240
Query 239 CAAAGGAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGAC 298
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 241 CAAAGGAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGAC 300
Query 299 AGAGAAACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCT 357
|||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 301 AGAGAAACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCT 359
Query 358 CTTCTTCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAG 417
||||| || |||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 360 CTTCTCCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAG 419
Query 418 TTAGGTGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTAT 477
||||||||||| ||||||||| | | | | | | |||||||||||||
Sbjct 420 CTAGGTGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTAT 461
Query 478 CAGACAGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACG 537
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 462 CAGACGGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACG 521
Query 538 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAAT 597
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 522 GAGAGATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT 581
Query 598 CTT-GAGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 656
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 582 -TTAGAGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGAC 640
Query 657 GAA-CGGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGA 715
||| ||| || ||| | || |||||||||||||||||||||||||||||| |||||||||
Sbjct 641 GAACCGG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGA 699
Query 716 GTGTGTGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 774
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 700 GTGTGTGG-TTAGTGATGAAGGAGAGGCCTTTGGTAACGTACCGGACTTTTACGTGTAGA 758
Query 775 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ATGAGATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGAT 818
Query 835 GTTTGGAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGC 894
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 819 GTTTGGAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGT 878
Query 895 CTTGGACGGTGAGGATT-GGGCCGTTGGATTA 925
|| ||||||||||| || |||||| |||||||
Sbjct 879 CTCGGACGGTGAGGTTTTGGGCCGGTGGATTA 910
> Ahg887585 jgi|Araly1|887585|Al_scaffold_0058_1
Length=705
Score = 987 bits (534), Expect = 0.0
Identities = 667/727 (92%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 184 GGATCGGTGATAACTAACGTTTCGTCGAGATCACGGAGAGGTAAGAGAAAATATTCAAAG 243
||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GGATCGGCGTTAACGAACGTTTCGTCGAAATCACGGAGAGGTAAGAGAAAATATTCAAAG 60
Query 244 GAGAATAATAGTAGCAGTACCGGATCCGTTAATAGTAACGGTAACAGCAAACGACAGAGA 303
|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GAGAATAACAGTAGCAGTAGCGGATCCGTTAATAGTAACGGTAACAGCAGACGACAGAGA 120
Query 304 AACGATGAGACGAAGAACGGATCTGGTGGT-GGTAGAGAGATCGTGACGTTGCCTCTTCT 362
||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 121 AACGAAGAGACGAAGAACGGATCTGGT-GTCGGTGGAGAGATCGTGACGTTGCCTCTTCT 179
Query 363 TCCAGAGACTCCTGAGAAGAAAGACTCGCCGTTGAAGGCTAAGGCGGCGCCGGAGTTAGG 422
|| |||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||
Sbjct 180 CCCGGAGACTCCTGAGAAGAAAGAGTCGCCGTTGAAGGCTGTGGCGGTGCCGGAGCTAGG 239
Query 423 TGCGGCGGCGTTGTGGCTGAGTTTTAATGACGGAGCTAGTTATAACAGACGTTATCAGAC 482
||||||| ||||||||| | | | | | | ||||||||||||||||||
Sbjct 240 TGCGGCGTCGTTGTGGC-------T--T-A---A-C----TCTAACAGACGTTATCAGAC 281
Query 483 AGAGTTAATGACGGAAACGGTTGTGTCGTCGTTGTTGACGGTGGAGTGTGTAACGGAGAG 542
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 282 GGAGTTAATGACGGAAACGGTTGTGTCGTCGGTGTTGACGGTGGAGTGTGTAACGGAGAG 341
Query 543 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGAGGAGAGGAAGATGAATCTT-G 601
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |
Sbjct 342 ATTGATGGAGGGAGAGTATGAGTTAGGGTGTACGGACGATGAGATTAAGATGAAT-TTAG 400
Query 602 AGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAA-C 660
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 401 AGAGAGACACGTGTCCCGGTTTTATATCGGACGGTTTAGGGAGAGTCATTTGGACGAACC 460
Query 661 GGTTCTTACAGAGAGTTGGTGGTTGGGAAAGATCATGAGCAGTGTAGTAAGATGAGTGTG 720
|| || ||| | || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 461 GG-TCGTACCGGGAATTGGTGGTTGGGAAAGATCATGAGCAGTGTGGTAAGATGAGTGTG 519
Query 721 TGGCTT-GTGATGAAGGAGAAGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 779
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 520 TGG-TTAGTGATGAAGGAGATGCCTTTGGTAACGTACCGGACTTTTACGTGTAGAATGAG 578
Query 780 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 ATTGCAGTACACGTGTCGTGATAAGGAGGTGAGTTCGATTACTTCGTTCTGTGATGTTTG 638
Query 840 GAGGATGAGTGACGGTGGCTTTGCGTGGCGGCTTGATGTTGATGCTGCACTTTGCCTTGG 899
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 639 GAGGATGAGTGACGGTGGCTTTGCTTGGCGGCTTGATGTTGATGCTGCTCTTTGTCTCGG 698
Query 900 ACGGTGA 906
|||||||
Sbjct 699 ACGGTGA 705
> Ahg496519 jgi|Araly1|496519|fgenesh2_kg.8__2335__AT5G63350.1
Length=1061
Score = 110 bits (59), Expect = 3e-23
Identities = 71/77 (92%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 580 GAGGAGAGGAAGATGAATCTTGAGAGAGACACGTGTCCTGGTTTTATATCGGACGGTTTA 639
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
Sbjct 594 GAGGAGAGGAAGATGAATCTTGTGAAAGACACGTGTCCTGGTTTTATATCGGACGGTGCA 653
Query 640 GGGAGAGTCATTTGGAC 656
|||||||||| |||||
Sbjct 654 GGGAGAGTCACGTGGAC 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5