BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50450.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495112 jgi|Araly1|495112|fgenesh2_kg.8__928__AT5G50450.1 1615 0.0
Ahg497493 jgi|Araly1|497493|fgenesh2_kg.631__1__AT5G50450.1 1282 0.0
> Ahg495112 jgi|Araly1|495112|fgenesh2_kg.8__928__AT5G50450.1
Length=1140
Score = 1615 bits (874), Expect = 0.0
Identities = 1016/1081 (94%), Gaps = 24/1081 (2%)
Strand=Plus/Plus
Query 56 ATGACGCATCTCAACAAAAAACAGAGGTTAGAGAATAACCATAACAATACTGTGAACAAC 115
||||||||||||||||||||||||||||||||||| ||||||||| || | ||
Sbjct 1 ATGACGCATCTCAACAAAAAACAGAGGTTAGAGAAGAACCATAACCAT--TTTG------ 52
Query 116 CATTTCGAAGACTTACATGACGATCTCATCATCTCTATCCTCCGCAAACTCGCTACCTCC 175
| | | |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 53 -A---C--A-ACTTACATGACGATCTCATCATCTCTATCCTCCGTAAACTCGCTTCCTCC 105
Query 176 GCTTCTTCTCCTTCCGATTTCCTCACCGTTCTCTCCACATGCAAGAGATTGAATCGGTTA 235
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 106 GCTTCTTCTCCTTCCGATTTCCTCACCGTACTCTCCACATGCAAGAGATTGAATCGGTTA 165
Query 236 GGATTACATCCTCTGGTTTTATCTAAAGCCGGTACTCAAACCCTAGCCGTCACGGCGGAG 295
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 166 GGTTTACAACCTCTGGTTTTATCAAAAGCCGGTACTCAAACCCTAGCCGTCACGGCGGAG 225
Query 296 AAATGGTCAGATTCTTCTCATAAATTCCTCAAACTCTGTGTTAATGCCGGAAACATCGAC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AAATGGTCAGATTCTTCTCATAAATTCCTCAAACTCTGTGTTAATGCCGGAAACATCGAC 285
Query 356 GCTTCGTACTCTCTCGGAATGATCCGATTTTACTGTCTACAAAATCCAGTGAGCGGCGCG 415
||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 286 GCTTCTTACGCTCTCGGAATGATCCGATTTTACTGTCTTCAAAATCCAGTGAGCGGCGCG 345
Query 416 TCATTAATGGCTAAAGCGGCGATTAAATCACACGCGCCGGCGCTTTATTCGTTATCGGTG 475
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 346 TCTTTAATGGCTAAAGCCGCGATTAAATCTCACGCGCCGGCGCTTTATTCGTTATCGGTG 405
Query 476 ATTCAGTTTAACGGAAGCGGCGGTTCAAAAACCGATAAGAATCTACGCGCCGGCGTTGCT 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 406 ATTCAGTTTAACGGAAGCGGCGGTTCAAAAACCGATAAGAACCTACGCGCCGGCGTTACT 465
Query 536 CTTTGTGCACGCTCTGCTTATTTAGGCCACGTCGATGCGTTACGAGAGCTTGGTCACTGT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CTTTGTGCACGCTCTGCTTATTTAGGCCACGTCGATGCGTTACGAGAGCTTGGTCACTGT 525
Query 596 CTTCAAGACGGTTACGGTGTTCCTCGTGACGTCTCCGAAGGTCGTCGTCTTTTGATTCAA 655
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 526 CTTCAAGACGGTTACGGTGTTCCTCGTGACGTCTCTGAAGGTCGTCGTCTTTTGATTCAA 585
Query 656 GCTAACGCGCGTGAGCTCGCGTGTTCTCTACGCTCTTACCTCTCTCTGAAATCTGGGGAC 715
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 586 GCTAACGCGCGTGAGCTCGCGTGTTCTCTTCGCTCTTACCTCTCTCTGAAATGTGG--A- 642
Query 716 GAGAACGAGACCTTAACTGATTTAAGCGTGGTTCCGGTTCAGGAGATTCATCCGGTTAAC 775
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 643 GA---CGAGATCTTAACTGATTTAAGCGTGGTTCCGGTTCAGGAGATCCATCCGGTTAAC 699
Query 776 CGGTTTTTAAAAGAGTGGTTTAGTTCGGGTCGGGTTGATTTAGCGGAAGGGTTAAGGATG 835
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 700 CGGTTTTTGAAGGAGTGGTTTAGTTCGGGTCGGGTTGATTTAGCGGATGGGTTAAGGATG 759
Query 836 TGTTCGCATGGTGGTTGTGGAAGGCCGGAGACTCGGGCTCATGAGTTTCGGCGATGTTCT 895
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 760 TGTTCGCATGGTGGTTGTGGGAGACCGGAGACTCGGGCTCATGAGTTCCGGCGATGTTCT 819
Query 896 GTTTGTGGGAAGGTTAATTATTGCTCGCGTGGTTGTCAGGCGTTGGATTGGAGAGCGAAG 955
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 820 GTTTGTGGGAAGGTGAATTATTGCTCACGTGGTTGTCAGGCGTTGGATTGGAGAGCCAAG 879
Query 956 CATAAGGTTGAATGTACGCCGTTGGATTTGTGGGTTGCGGCAGCGGCGGAGATTGGCGAC 1015
|||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||| |
Sbjct 880 CATAAGATTGAATGTACGCCGTTGGATTTGTGGATTGCGGTACCGGCGGAGATTGGCGTC 939
Query 1016 GACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATGGTGAGCGGTAACGGCTCTAA 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 940 GACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATGGTGAGCGGTAACGGCTCTGA 999
Query 1076 CGCtttttttCAAGGAAATGACTGAAATGCCAACAGTTTCTTTGACTGTTGAGttttttt 1135
|||||||| ||| |||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 1000 CGCTTTTT---AAGTAAATGACTAAAATGCCAAAAGTTTCTTTGACTGTTTAGTTTTTTT 1056
Query 1136 t 1136
|
Sbjct 1057 T 1057
Score = 82.4 bits (44), Expect = 8e-15
Identities = 74/86 (86%), Gaps = 11/86 (13%)
Strand=Plus/Plus
Query 1186 tcttaattaattagttttGGCTAATGGCGTTTCTGAA-TCTTCTGATACT-AAACTGGCA 1243
|||||||||||||| ||| | |||||||||||| || ||||||||| ||| || ||
Sbjct 1064 TCTTAATTAATTAG-TTT-G-----GGCGTTTCTGAATTC-TCTGATACTGAAA-TGACA 1114
Query 1244 TGTTATTTTAAATAATATAGTTTTTT 1269
||||||||||||||||||||||||||
Sbjct 1115 TGTTATTTTAAATAATATAGTTTTTT 1140
> Ahg497493 jgi|Araly1|497493|fgenesh2_kg.631__1__AT5G50450.1
Length=1067
Score = 1282 bits (694), Expect = 0.0
Identities = 819/875 (94%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 30 ACAAAACCAACAATTATCAA---TCTT-CAATGACGCATCTCAACAAAAAACAGAGGTTA 85
|||||||||||||| | ||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1 ACAAAACCAACAATAACCAATCTTCTTCCGATGACGCATCTCAACAAAAAACAGAGGTTA 60
Query 86 GAGAATAACCATAACAATACTGTGAACAACCATTTCGAAGACTTACATGACGATCTCATC 145
||||| || | | | | ||||||||||| |||||||||||||||||||||
Sbjct 61 GAGAAGAA-C----C---A---T----AACCATTTCGACGACTTACATGACGATCTCATC 105
Query 146 ATCTCTATCCTCCGCAAACTCGCTACCTCCGCTTCTTCTCCTTCCGATTTCCTCACCGTT 205
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 106 ATCTCTATCCTCCGTAAACTCGCTTCCTCCGCTTCTTCTCCTTCCGATTTCCTCACCGTA 165
Query 206 CTCTCCACATGCAAGAGATTGAATCGGTTAGGATTACATCCTCTGGTTTTATCTAAAGCC 265
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 166 CTCTCCACATGCAAGAGATTGAATCGGTTAGGTTTACAACCTCTGGTTTTATCAAAAGCC 225
Query 266 GGTACTCAAACCCTAGCCGTCACGGCGGAGAAATGGTCAGATTCTTCTCATAAATTCCTC 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GGTACTCAAACCCTAGCCGTCACGGCGGAGAAATGGTCAGATTCTTCTCATAAATTCCTC 285
Query 326 AAACTCTGTGTTAATGCCGGAAACATCGACGCTTCGTACTCTCTCGGAATGATCCGATTT 385
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 286 AAACTCTGTGTTAATGCCGGAAACATCGACGCTTCTTACGCTCTCGGAATGATCCGATTT 345
Query 386 TACTGTCTACAAAATCCAGTGAGCGGCGCGTCATTAATGGCTAAAGCGGCGATTAAATCA 445
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 346 TACTGTCTTCAAAATCCAGTGAGCGGCGCGTCTTTAATGGCTAAAGCCGCGATTAAATCT 405
Query 446 CACGCGCCGGCGCTTTATTCGTTATCGGTGATTCAGTTTAACGGAAGCGGCGGTTCAAAA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CACGCGCCGGCGCTTTATTCGTTATCGGTGATTCAGTTTAACGGAAGCGGCGGTTCAAAA 465
Query 506 ACCGATAAGAATCTACGCGCCGGCGTTGCTCTTTGTGCACGCTCTGCTTATTTAGGCCAC 565
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 466 ACCGATAAGAACCTACGCGCCGGCGTTACTCTTTGTGCACGCTCTGCTTATTTAGGCCAC 525
Query 566 GTCGATGCGTTACGAGAGCTTGGTCACTGTCTTCAAGACGGTTACGGTGTTCCTCGTGAC 625
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 GTCGATGCGTTACGAGAGCTTGGTCACCGTCTTCAAGACGGTTACGGTGTTCCTCGTGAC 585
Query 626 GTCTCCGAAGGTCGTCGTCTTTTGATTCAAGCTAACGCGCGTGAGCTCGCGTGTTCTCTA 685
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 586 GTCTCTGAAGGTCGTCGTCTTTTGATTCAAGCTTACGCGCGTGAGCTCGCGTGTTCTCTA 645
Query 686 CGCTCTTACCTCTCTCTGAAATCTGGGGACGAGAACGAGACCTTAACTGATTTAAGCGTG 745
|||||||||||||||||||||| ||| | || ||||| |||||||||||||||||||
Sbjct 646 CGCTCTTACCTCTCTCTGAAATATGG--A-GA---CGAGATCTTAACTGATTTAAGCGTG 699
Query 746 GTTCCGGTTCAGGAGATTCATCCGGTTAACCGGTTTTTAAAAGAGTGGTTTAGTTCGGGT 805
||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 700 GTTCCGGTTCAGGAGATTCATCCGGTTTACCGGTTTTTGAAGGAGTGGTTTAGTTCGGGT 759
Query 806 CGGGTTGATTTAGCGGAAGGGTTAAGGATGTGTTCGCATGGTGGTTGTGGAAGGCCGGAG 865
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 760 CGGGTTGATTTATCGGAAGGGTTAAGGATGTGTTCGCACGGTGGTTGTGGAAGGCCGGAG 819
Query 866 ACTCGGGCTCATGAGTTTCGGCGATGTTCTGTTTG 900
||||||||||||||||| || ||||||||||||||
Sbjct 820 ACTCGGGCTCATGAGTTCCGCCGATGTTCTGTTTG 854
Score = 87.9 bits (47), Expect = 2e-16
Identities = 74/85 (87%), Gaps = 9/85 (11%)
Strand=Plus/Plus
Query 1186 tcttaattaattagttttGGCTAATGGCGTTTCTGAA-TCTTCTGATACTAAACTGGCAT 1244
|||||||||||||| ||| | |||||||||||| || |||||||||||| || |||
Sbjct 991 TCTTAATTAATTAG-TTT-G-----GGCGTTTCTGAATTC-TCTGATACTAAAATGACAT 1042
Query 1245 GTTATTTTAAATAATATAGTTTTTT 1269
|||||||||||||||||||||||||
Sbjct 1043 GTTATTTTAAATAATATAGTTTTTT 1067
Score = 86.1 bits (46), Expect = 6e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1007 ATTGGCGACGACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATG 1055
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATTGGCGTCGACGGTGAAGCGGTGGCGGTGGAGATTGATGATAATCATG 937
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1091 AAATGACTGAAATGCCAACAGTTTCTTTGACTGTTGAGtttttttt 1136
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 939 AAATGACTAAAATGCCAACAGTTTCTTTGACTGTTGAGTTTTTTTT 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5