BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50650.1
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484065 jgi|Araly1|484065|fgenesh2_kg.5__57__AT2G01470.1 1127 0.0
Ahg916681 jgi|Araly1|916681|Al_scaffold_0008_1432 913 0.0
Ahg357318 jgi|Araly1|357318|fgenesh1_pg.C_scaffold_8001105 255 4e-67
> Ahg484065 jgi|Araly1|484065|fgenesh2_kg.5__57__AT2G01470.1
Length=1426
Score = 1127 bits (610), Expect = 0.0
Identities = 1001/1180 (85%), Gaps = 65/1180 (6%)
Strand=Plus/Plus
Query 21 ACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCCGTCGACTGGATTCTAGAGGA 80
|||||||||| | ||||| ||||||||||| |||||||||||||| ||||||| ||||
Sbjct 62 ACCGTCGAATATGCAGACTTACGGTGTACCGATTTACGCCGTCGATTGGATTCCGGAGGT 121
Query 81 AGCTGTCAGATCCAAAATCACTAA-GGATCAGg----at--gatgatgatgatga----t 129
|||||||||||| ||||||| ||| ||||| || || || ||||||||||| |
Sbjct 122 AGCTGTCAGATCGAAAATCA-TAATGGATCCGGATAAATCCGAAGATGATGATGAGTCTT 180
Query 130 -g--G--ATCGTCGTCGTCG------T--C---G-TACATCGTTTTATCCGGCGGAGGAG 172
| | |||||||||||| | | | | ||||||||| ||||||||||| |
Sbjct 181 CGTCGTCTTCGTCGTCGTCGTCTTCTTCCCGGAGCTGCATCGTTTTGTCCGGCGGAGGCG 240
Query 173 GAGAAGGACGAAGTGGAATACCTAATGTCATCTTAATCTGTCGTGTTGATCTCCACACCA 232
|||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 241 GAGAGGGAAGAAGCGGAATCCCTAATGTTATCTTAATCTGTCGTGTTGATCTAAACACCA 300
Query 233 ATTCTCTCTCTGAACAACCTATT-GGTAGGCGTGTGATTGGCACTGATCTACCTTATCGT 291
|||||||||| ||||||||| || ||||||| |||| |||||||||||||||||||||||
Sbjct 301 ATTCTCTCTCGGAACAACCT-TTGGGTAGGCTTGTGGTTGGCACTGATCTACCTTATCGT 359
Query 292 ATGGCTATTCATCCTCGTCAAGGTGGTCTTATTTGTGCATTGCCTAACAGTTGCAGACTG 351
|||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 ATGGCTGTTCATCCTCGGGAAGGTGGTCTTATTTGCGCATTGCCTAACAGTTGCAGACTG 419
Query 352 TTTGATTGGGAAAACATTAT-AG-AG-GATGATAAT---G--AG-GAAGAGTCAGAGAAA 402
||| |||||||| ||||||| || | || |||||| | | |||||||||||||||
Sbjct 420 TTTCATTGGGAAGACATTATGAGCCGAGAGGATAATCAGGCTGGTGAAGAGTCAGAGAAA 479
Query 403 GTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTGTCTCTCTCGTTT-AATCAGGATG 460
| || |||||||||||||||||||||||||||| ||| |||| | ||| ||||||| |
Sbjct 480 G-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTGGCTCTGGC-TTTCGATCAGGAGG 537
Query 461 GGACTGTTCTAGCTACTGGTGCAGAGGATGGGACTTTGAGGGTTTTTGAATGGCCAAGCA 520
|| ||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 538 GGTCTGTTCTCGCCGCTGGTGCGGAGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCA 597
Query 521 TGAAGACTTTACTTAATGAGTCTAAGACACATGCATCAGTTAAAAGCCTAACTTTCAGCG 580
|||| || ||||||||||||||| || | ||| |||||||||||||||| ||||||||||
Sbjct 598 TGAAAACGTTACTTAATGAGTCTCAGGCTCATTCATCAGTTAAAAGCCTGACTTTCAGCG 657
Query 581 AAAGTGGTAAGTTTCTTGTATCTCTTGGA-GCTCCACTTTGTCGGGTTTGGGATGTGAAT 639
|||||||||| ||||||||||||||| || | |||| |||||||||||||||||||||||
Sbjct 658 AAAGTGGTAAATTTCTTGTATCTCTT-GACGGTCCAGTTTGTCGGGTTTGGGATGTGAAT 716
Query 640 GCTTCTGCTGCTATTGCCAGTCTATCAAAAGAGAAGGACGAGATGTTTGCCTCGTGTAGA 699
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 GCTTCTGCTGCCGTTGCCAGTCTATCAAAAGAGAAGGACGAGATGTTTGCCTCCTGTAGA 776
Query 700 TTCTCTGTAGACAATTCAGGCAGTGAAGTTCTTTATGTTGCTGCAAACACTCAACGTGGT 759
||||||||||||| | |||||| |||||||||||| |||||||||||||| ||||||||
Sbjct 777 TTCTCTGTAGACAGTGCAGGCAATGAAGTTCTTTACATTGCTGCAAACACTGAACGTGGT 836
Query 760 GGGAGTATTATAACATGGGATACAACATCATGGAGAAGAAGAA-GTTCAAAGCTTATTAA 818
|||||||||||||||| ||| ||| |||||||| ||||| || | || |||| ||| ||
Sbjct 837 GGGAGTATTATAACATATGATTCAAAATCATGGAAAAGAA-AATGGTCGAAGCCTAT-AA 894
Query 819 AAGAAACAACTCTATATCTGCCTTTAATGTCTCAGCTGATGGGAAGCTTCTTGCAGTAGG 878
|| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 895 AA-AAG-AACTCTATATCAGCCTTTAATGTCTCAGCTGATGGAAAGCTTCTTGCAATAGG 952
Query 879 AACCCTCGAAGGAGATGTTTTAATAATTGATTCGACAAAGA-TGCAAACTAACCAAATCG 937
||||| |||||||||||||||||| |||| |||| | || ||||||||| |||| |||
Sbjct 953 CACCCTTGAAGGAGATGTTTTAATACTTGAACCGACGA-GAATGCAAACTATCCAAGTCG 1011
Query 938 TCAAGAAAGCTCATCTCGGTTTGGTCACCGCACTGACTTTCTCCCCTGATTCAAGGTGCT 997
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 1012 TCAAGAAAGCGCATCTCGGTTTGGTCACAGCGCTGACTTTCTCCCCTGATTCAAGGGGCT 1071
Query 998 TAGTGTCAGTATCTTTTGACTCAAGGGCAAGGCTAACCGTGATCAAACAAAAGGGTGAAA 1057
||||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||||| |
Sbjct 1072 TAGTGTCGGTATCTTTCGACTCAAGGGCAAGGCTGACCATGATTGAACAAAAGGGTGACA 1131
Query 1058 AACGTCGAGTATATCTG-TGGGTGGCGGCATTGTTGTT--T-GTGTTGGTATACGTGGTT 1113
||| | || || | || ||| | | | ||| || || | ||||| |||||||||||
Sbjct 1132 AACCTGGAATA-AGGTGGTGGCTA-CTG-ATT-TTATTGGTAGTGTTACTATACGTGGTT 1187
Query 1114 TTGTATTATT-TGATGGTGGCAATGGG-GATCATACATTA 1151
||||||| | ||| ||||| ||| | |||||| |||
Sbjct 1188 GCATATTATTAT-ATGAAGGCAAAGGGTG-TCATACCTTA 1225
> Ahg916681 jgi|Araly1|916681|Al_scaffold_0008_1432
Length=642
Score = 913 bits (494), Expect = 0.0
Identities = 551/579 (95%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 485 AGGATGGGACTTTGAGGGTTTTTGAATGGCCAAGCATGAAGACT-TTACTTAATGAGTCT 543
||||||||||||||||||||||||||||||| |||||||| | | |||||||||||||||
Sbjct 8 AGGATGGGACTTTGAGGGTTTTTGAATGGCCCAGCATGAA-AGTATTACTTAATGAGTCT 66
Query 544 AAGACACATGCATCAGTTAAAAGCCTAACTTTCAGCGAAAGTGGTAAGTTTCTTGTATCT 603
|| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 67 CAGGCACATGCATCAGTTAAAAGCTTAACTTTCAGTGAAAGTGGTAAGTTTCTTGTATCT 126
Query 604 CTTGGAGCTCCACTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCTATTGCCAGTCTA 663
||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 127 CTTGGAGGTCCAGTTTGTCGGGTTTGGGATGTGAATGCTTCTGCTGCCATTGCCAGTCTA 186
Query 664 TCAAAAGAGAAGGACGAGATGTTTGCCTCGTGTAGATTCTCTGTAGACAATTCAGGCAGT 723
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| |
Sbjct 187 TCAAAAGAGAAGGATGAGATGTTTGCCTCCTGTAGATTCTCTGTAGACAGTGCAGGCAAT 246
Query 724 GAAGTTCTTTATGTTGCTGCAAACACTCAACGTGGTGGGAGTATTATAACATGGGATACA 783
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 247 GAAGTTCTTTACATTGCTGCAAACACTGAACGTGGTGGGAGTATTATAACATGGGATTCA 306
Query 784 ACATCATGGAGAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 843
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AAATCATGGAAAAGAAGAAGTTCAAAGCTTATTAAAAGAAACAACTCTATATCTGCCTTT 366
Query 844 AATGTCTCAGCTGATGGGAAGCTTCTTGCAGTAGGAACCCTCGAAGGAGATGTTTTAATA 903
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 367 AATGTCTCAGCTGATGGGAAGCTTCTTGCAATAGGAACACTCGAAGGAGATCTTTTAATA 426
Query 904 ATTGATTCGACAAAGATGCAAACTAACCAAATCGTCAAGAAAGCTCATCTCGGTTTGGTC 963
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 427 ATTGATTCGACAAAGATGCAAACTAACCAAGTCGTCAAGAAAGCTCATCTCGGTTTAGTC 486
Query 964 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACCGCACTGACTTTCTCCCCTGATTCAAGGTGCTTAGTGTCAGTATCTTTTGACTCAAGG 546
Query 1024 GCAAGGCTAACCGTGATCAAACAAAAGGGTGAAAAACGT 1062
||||||||||||||||||||||||||||||| |||||||
Sbjct 547 GCAAGGCTAACCGTGATCAAACAAAAGGGTGGAAAACGT 585
> Ahg357318 jgi|Araly1|357318|fgenesh1_pg.C_scaffold_8001105
Length=366
Score = 255 bits (138), Expect = 4e-67
Identities = 164/176 (93%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 264 TGTGATTGGCACTGATCTACCTTATCGTATGGCTATTCATCCTCGTCAAGGTGGTCTTAT 323
|||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 178 TGTGGTT-GCACTGATCTACCTTATCGTATGGCTGTTCATCCTCGTCAAGATGGTCTTAT 236
Query 324 TTGTGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGAAAACATTATAGAGGATGATAA 383
||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 237 TTGCGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGATCACATTACAGAGGTTGATAA 296
Query 384 TGAGGAAGAGTCAGAGAAAGTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTG 438
|||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 297 TGAGGAAGAGTCAGAGAAAG-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTG 351
Score = 195 bits (105), Expect = 1e-48
Identities = 161/186 (87%), Gaps = 12/186 (6%)
Strand=Plus/Plus
Query 1 ATGGCGAGTAATCAACAACCACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCC 60
|||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||
Sbjct 1 ATGGCGAGTAATCAACAACCACCGTCAAATCTGCAGACTTACGGTATACCAATTTACGCC 60
Query 61 GTCGACTGGATTCTAGAGGAAGCTGTCAGATCCAAAATCACTAAGGATCAGgatgatgat 120
|||||||||||||| | | || ||| |||||||||||||||||||||||||||
Sbjct 61 GTCGACTGGATTCT-G-------T--CAAATCTAAAATCACTAAGGATCAGGATGATGAT 110
Query 121 gatgatga-tgGATCGTCGTCGTCGTCGTACATCGTTTTATCCGGCGGAGGAGGAGAAGG 179
|||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 111 GATGATCTCTCC-TCGTCGTCGTCATCGTACATCGTTTTATCCGGCGGAGGCGGGGAAGG 169
Query 180 ACGAAG 185
||||||
Sbjct 170 ACGAAG 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50360373357
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5